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1. DeepGSDeepGSPublic

   DeepGS is a R package for predicting phenotypes from genotypes using deep learning techniques.

   R 62 19

2. CAFUCAFUPublic

   CAFU: A Galaxy framework for exploring unmapped RNA-Seq data

   Python 14 7

3. deepTSdeepTSPublic

   deepTS explores transcriptional switch events from pairwise, temporal and population transcriptome data.

   R 6 4

4. iwa-miRNAiwa-miRNAPublic

   iwa-miRNA is a web-based platform for interactive annotation of plant miRNAs

   Perl 1 1

5. deepEAdeepEAPublic

   deepEA: a containerized web server for interactive analysis of epitranscriptome sequencing data

   HTML 5 1

6. easyMFeasyMFPublic

   Matrix factorization-based biological discovery from large-scale transcriptome data using easyMF

   R 3 2