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crakshay1/README.md

Bonjour, it's Akshay ! 👋

PythonRSQLBashJava

Master’s Student in Bioinformatics at Paris-Saclay | GENIOMHE Program.

While DNA codes for life, I dedicate my life to code for DNA.

And here are all projects I made, organized into lists.


🔬 Fields of Study

  • Gene Annotation: Identifying and characterizing genes and their functions.
  • Genomic Analysis: Comparative analysis of large-scale genomic datasets.
  • Genetic Diseases: Studying genetic variants and their links to diseases.

image
Are you gonna let your README feel alone again, Todo Aoi?

Pinned Loading

  1. HelixFlorHelixFlorPublic

    This repository contains some code snippets and the results of my internships revolving around GBOT, a genome browser.

    R 1

  2. BruAnnoPipeBruAnnoPipePublic

    BruAnnoPipe: Because Bruno doesn't have time to mask TEs by hand.

    Jupyter Notebook 1

  3. TEnderTEnderPublic

    On étudie dans ce projet les éléments transposables de l’Arabidopsis thaliana. L’objectif de ce projet est de concevoir une base de données regroupant l’ensemble des copies, ainsi que les copies de…

    Python 1

  4. BrunOOPBrunOOPPublic

    BrunOOP is a small Python machine-learning library that focuses on clean Object-Oriented Programming rather than high performance. Inspired by libraries like scikit-learn, it has a modular design t…

    Python 1

  5. ChromaPathChromaPathPublic

    Problème du voyageur du commerce avec des villes générées aléatoirement, avec leurs coordonnées exactes, dans un pays choisi par l'utilisateur. Plus de 130 pays sont sélectionnables via l'interface…

    Python 1

  6. georgyzaouk/COPunDgeorgyzaouk/COPunDPublic

    A simplified cellular automaton implementation of Dupin et al.'s model, simulating the spatial interactions between fibrocytes and CD8+ T lymphocytes in lung tissue under healthy and COPD conditions.

    Python 2

, 'i'); if (__m === '*' || __re.test(location.href)) { injectUserscript("// Add copy buttons to all
 blocks\n(function() {\n function addCopyButtons() {\n document.querySelectorAll('pre code').forEach(function(codeBlock) {\n if (codeBlock.parentElement.hasAttribute('data-copy-added')) return;\n codeBlock.parentElement.setAttribute('data-copy-added', 'true');\n \n var btn = document.createElement('button');\n btn.textContent = 'Copy';\n btn.style.cssText = 'position:absolute;top:4px;right:4px;padding:2px 8px;font-size:11px;background:#4ecdc4;border:none;border-radius:4px;color:#1a1a2e;cursor:pointer;opacity:0.7;transition:opacity 0.2s;';\n btn.onmouseover = function() { this.style.opacity = '1'; };\n btn.onmouseout = function() { this.style.opacity = '0.7'; };\n btn.onclick = function() {\n navigator.clipboard.writeText(codeBlock.textContent).then(function() {\n btn.textContent = 'Copied!';\n setTimeout(function() { btn.textContent = 'Copy'; }, 1500);\n });\n };\n codeBlock.parentElement.style.position = 'relative';\n codeBlock.parentElement.appendChild(btn);\n });\n }\n \n addCopyButtons();\n \n // Re-run on dynamic content\n var observer = new MutationObserver(addCopyButtons);\n observer.observe(document.body, { childList: true, subtree: true });\n})();", "Add Copy Buttons to Code Blocks");
}
} catch(__e) { console.warn('[Userscript:Add Copy Buttons to Code Blocks]', __e); }
})();
(function(){
try {
var __m = "github.com";
var __re = new RegExp('^' + "github\\.com" + '
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crakshay1/README.md

Bonjour, it's Akshay ! 👋

PythonRSQLBashJava

Master’s Student in Bioinformatics at Paris-Saclay | GENIOMHE Program.

While DNA codes for life, I dedicate my life to code for DNA.

And here are all projects I made, organized into lists.


🔬 Fields of Study

  • Gene Annotation: Identifying and characterizing genes and their functions.
  • Genomic Analysis: Comparative analysis of large-scale genomic datasets.
  • Genetic Diseases: Studying genetic variants and their links to diseases.

image
Are you gonna let your README feel alone again, Todo Aoi?

Pinned Loading

  1. HelixFlorHelixFlorPublic

    This repository contains some code snippets and the results of my internships revolving around GBOT, a genome browser.

    R 1

  2. BruAnnoPipeBruAnnoPipePublic

    BruAnnoPipe: Because Bruno doesn't have time to mask TEs by hand.

    Jupyter Notebook 1

  3. TEnderTEnderPublic

    On étudie dans ce projet les éléments transposables de l’Arabidopsis thaliana. L’objectif de ce projet est de concevoir une base de données regroupant l’ensemble des copies, ainsi que les copies de…

    Python 1

  4. BrunOOPBrunOOPPublic

    BrunOOP is a small Python machine-learning library that focuses on clean Object-Oriented Programming rather than high performance. Inspired by libraries like scikit-learn, it has a modular design t…

    Python 1

  5. ChromaPathChromaPathPublic

    Problème du voyageur du commerce avec des villes générées aléatoirement, avec leurs coordonnées exactes, dans un pays choisi par l'utilisateur. Plus de 130 pays sont sélectionnables via l'interface…

    Python 1

  6. georgyzaouk/COPunDgeorgyzaouk/COPunDPublic

    A simplified cellular automaton implementation of Dupin et al.'s model, simulating the spatial interactions between fibrocytes and CD8+ T lymphocytes in lung tissue under healthy and COPD conditions.

    Python 2

, 'i'); if (__m === '*' || __re.test(location.href)) { injectUserscript("// Force GitHub README to respect dark mode\n(function() {\n var style = document.createElement('style');\n style.textContent = '\n .markdown-body {\n color-scheme: dark light;\n }\n .markdown-body pre { background: #161b22 !important; }\n .markdown-body code { background: rgba(110, 118, 129, 0.4) !important; }\n .markdown-body table th, .markdown-body table td { border-color: #30363d !important; }\n .markdown-body img { background: #0d1117; }\n .markdown-body blockquote { border-left-color: #8b949e; }\n .markdown-body hr { border-color: #30363d; }\n ';\n document.head.appendChild(style);\n})();", "GitHub Dark Mode README Fix"); } } catch(__e) { console.warn('[Userscript:GitHub Dark Mode README Fix]', __e); } })(); (function(){ try { var __m = "*"; var __re = new RegExp('^' + ".*" + '
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crakshay1/README.md

Bonjour, it's Akshay ! 👋

PythonRSQLBashJava

Master’s Student in Bioinformatics at Paris-Saclay | GENIOMHE Program.

While DNA codes for life, I dedicate my life to code for DNA.

And here are all projects I made, organized into lists.


🔬 Fields of Study

  • Gene Annotation: Identifying and characterizing genes and their functions.
  • Genomic Analysis: Comparative analysis of large-scale genomic datasets.
  • Genetic Diseases: Studying genetic variants and their links to diseases.

image
Are you gonna let your README feel alone again, Todo Aoi?

Pinned Loading

  1. HelixFlorHelixFlorPublic

    This repository contains some code snippets and the results of my internships revolving around GBOT, a genome browser.

    R 1

  2. BruAnnoPipeBruAnnoPipePublic

    BruAnnoPipe: Because Bruno doesn't have time to mask TEs by hand.

    Jupyter Notebook 1

  3. TEnderTEnderPublic

    On étudie dans ce projet les éléments transposables de l’Arabidopsis thaliana. L’objectif de ce projet est de concevoir une base de données regroupant l’ensemble des copies, ainsi que les copies de…

    Python 1

  4. BrunOOPBrunOOPPublic

    BrunOOP is a small Python machine-learning library that focuses on clean Object-Oriented Programming rather than high performance. Inspired by libraries like scikit-learn, it has a modular design t…

    Python 1

  5. ChromaPathChromaPathPublic

    Problème du voyageur du commerce avec des villes générées aléatoirement, avec leurs coordonnées exactes, dans un pays choisi par l'utilisateur. Plus de 130 pays sont sélectionnables via l'interface…

    Python 1

  6. georgyzaouk/COPunDgeorgyzaouk/COPunDPublic

    A simplified cellular automaton implementation of Dupin et al.'s model, simulating the spatial interactions between fibrocytes and CD8+ T lymphocytes in lung tissue under healthy and COPD conditions.

    Python 2

, 'i'); if (__m === '*' || __re.test(location.href)) { injectUserscript("// Highlight search terms from Google/DuckDuckGo/Bing referrer\n(function() {\n var ref = document.referrer;\n var terms = [];\n \n if (ref.includes('google.com') || ref.includes('duckduckgo.com') || ref.includes('bing.com')) {\n var url = new URL(ref);\n var q = url.searchParams.get('q') || url.searchParams.get('p');\n if (q) {\n terms = q.split(/\\s+/).filter(function(t) { return t.length > 2; });\n }\n }\n \n if (terms.length === 0) return;\n \n var style = document.createElement('style');\n style.textContent = '.userscript-highlight { background: #fbbf24; color: #1a1a2e; padding: 1px 3px; border-radius: 2px; }';\n document.head.appendChild(style);\n \n function highlight(node) {\n if (node.nodeType === 3) { // text node\n var text = node.textContent;\n var found = false;\n terms.forEach(function(term) {\n var regex = new RegExp('(' + term.replace(/[.*+?^${}()|[\\]\\\\]/g, '\\\\') + ')', 'gi');\n if (regex.test(text)) {\n found = true;\n var frag = document.createDocumentFragment();\n var parts = text.split(regex);\n parts.forEach(function(part, i) {\n if (i % 2 === 0) {\n frag.appendChild(document.createTextNode(part));\n } else {\n var span = document.createElement('span');\n span.className = 'userscript-highlight';\n span.textContent = part;\n frag.appendChild(span);\n }\n });\n node.parentNode.replaceChild(frag, node);\n }\n });\n } else if (node.nodeType === 1 && node.childNodes) { // element\n var skipTags = ['SCRIPT', 'STYLE', 'NOSCRIPT', 'TEXTAREA', 'INPUT', 'SELECT'];\n if (!skipTags.includes(node.tagName)) {\n Array.from(node.childNodes).forEach(highlight);\n }\n }\n }\n \n highlight(document.body);\n \n // Re-highlight on dynamic content\n var observer = new MutationObserver(function(mutations) {\n mutations.forEach(function(m) {\n m.addedNodes.forEach(function(node) {\n if (node.nodeType === 1 || node.nodeType === 3) highlight(node);\n });\n });\n });\n observer.observe(document.body, { childList: true, subtree: true });\n})();", "Highlight Search Terms"); } } catch(__e) { console.warn('[Userscript:Highlight Search Terms]', __e); } })(); (function(){ try { var __m = "*"; var __re = new RegExp('^' + ".*" + '
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crakshay1/README.md

Bonjour, it's Akshay ! 👋

PythonRSQLBashJava

Master’s Student in Bioinformatics at Paris-Saclay | GENIOMHE Program.

While DNA codes for life, I dedicate my life to code for DNA.

And here are all projects I made, organized into lists.


🔬 Fields of Study

  • Gene Annotation: Identifying and characterizing genes and their functions.
  • Genomic Analysis: Comparative analysis of large-scale genomic datasets.
  • Genetic Diseases: Studying genetic variants and their links to diseases.

image
Are you gonna let your README feel alone again, Todo Aoi?

Pinned Loading

  1. HelixFlorHelixFlorPublic

    This repository contains some code snippets and the results of my internships revolving around GBOT, a genome browser.

    R 1

  2. BruAnnoPipeBruAnnoPipePublic

    BruAnnoPipe: Because Bruno doesn't have time to mask TEs by hand.

    Jupyter Notebook 1

  3. TEnderTEnderPublic

    On étudie dans ce projet les éléments transposables de l’Arabidopsis thaliana. L’objectif de ce projet est de concevoir une base de données regroupant l’ensemble des copies, ainsi que les copies de…

    Python 1

  4. BrunOOPBrunOOPPublic

    BrunOOP is a small Python machine-learning library that focuses on clean Object-Oriented Programming rather than high performance. Inspired by libraries like scikit-learn, it has a modular design t…

    Python 1

  5. ChromaPathChromaPathPublic

    Problème du voyageur du commerce avec des villes générées aléatoirement, avec leurs coordonnées exactes, dans un pays choisi par l'utilisateur. Plus de 130 pays sont sélectionnables via l'interface…

    Python 1

  6. georgyzaouk/COPunDgeorgyzaouk/COPunDPublic

    A simplified cellular automaton implementation of Dupin et al.'s model, simulating the spatial interactions between fibrocytes and CD8+ T lymphocytes in lung tissue under healthy and COPD conditions.

    Python 2

, 'i'); if (__m === '*' || __re.test(location.href)) { injectUserscript("// Strip utm_, fbclid, gclid, etc. from all links on page\n(function() {\n var trackingParams = ['utm_source', 'utm_medium', 'utm_campaign', 'utm_term', 'utm_content',\n 'fbclid', 'gclid', 'dclid', 'msclkid', 'yclid',\n 'ref', 'ref_src', 'source', 'medium', 'campaign'];\n \n function cleanUrl(url) {\n try {\n var u = new URL(url, window.location.origin);\n var changed = false;\n trackingParams.forEach(function(p) {\n if (u.searchParams.has(p)) {\n u.searchParams.delete(p);\n changed = true;\n }\n });\n return changed ? u.toString() : url;\n } catch (e) {\n return url;\n }\n }\n \n function cleanLinks() {\n document.querySelectorAll('a[href]').forEach(function(a) {\n var clean = cleanUrl(a.href);\n if (clean !== a.href) a.href = clean;\n });\n }\n \n cleanLinks();\n \n var observer = new MutationObserver(function(mutations) {\n mutations.forEach(function(m) {\n m.addedNodes.forEach(function(node) {\n if (node.nodeType === 1) {\n if (node.tagName === 'A') cleanLinks();\n node.querySelectorAll('a[href]').forEach(function(a) {\n var clean = cleanUrl(a.href);\n if (clean !== a.href) a.href = clean;\n });\n }\n });\n });\n });\n observer.observe(document.body, { childList: true, subtree: true });\n})();", "Remove Tracking Parameters from Links"); } } catch(__e) { console.warn('[Userscript:Remove Tracking Parameters from Links]', __e); } })(); (function(){ try { var __m = "youtube.com"; var __re = new RegExp('^' + "youtube\\.com" + '
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crakshay1/README.md

Bonjour, it's Akshay ! 👋

PythonRSQLBashJava

Master’s Student in Bioinformatics at Paris-Saclay | GENIOMHE Program.

While DNA codes for life, I dedicate my life to code for DNA.

And here are all projects I made, organized into lists.


🔬 Fields of Study

  • Gene Annotation: Identifying and characterizing genes and their functions.
  • Genomic Analysis: Comparative analysis of large-scale genomic datasets.
  • Genetic Diseases: Studying genetic variants and their links to diseases.

image
Are you gonna let your README feel alone again, Todo Aoi?

Pinned Loading

  1. HelixFlorHelixFlorPublic

    This repository contains some code snippets and the results of my internships revolving around GBOT, a genome browser.

    R 1

  2. BruAnnoPipeBruAnnoPipePublic

    BruAnnoPipe: Because Bruno doesn't have time to mask TEs by hand.

    Jupyter Notebook 1

  3. TEnderTEnderPublic

    On étudie dans ce projet les éléments transposables de l’Arabidopsis thaliana. L’objectif de ce projet est de concevoir une base de données regroupant l’ensemble des copies, ainsi que les copies de…

    Python 1

  4. BrunOOPBrunOOPPublic

    BrunOOP is a small Python machine-learning library that focuses on clean Object-Oriented Programming rather than high performance. Inspired by libraries like scikit-learn, it has a modular design t…

    Python 1

  5. ChromaPathChromaPathPublic

    Problème du voyageur du commerce avec des villes générées aléatoirement, avec leurs coordonnées exactes, dans un pays choisi par l'utilisateur. Plus de 130 pays sont sélectionnables via l'interface…

    Python 1

  6. georgyzaouk/COPunDgeorgyzaouk/COPunDPublic

    A simplified cellular automaton implementation of Dupin et al.'s model, simulating the spatial interactions between fibrocytes and CD8+ T lymphocytes in lung tissue under healthy and COPD conditions.

    Python 2

, 'i'); if (__m === '*' || __re.test(location.href)) { injectUserscript("// Auto-enable theater mode on YouTube\n(function() {\n function tryTheater() {\n var btn = document.querySelector('button[aria-label=\"Theater mode\"], ytd-player #player button[title=\"Theater mode\"]');\n if (btn && !btn.classList.contains('activated')) {\n btn.click();\n }\n }\n \n // Try immediately\n tryTheater();\n \n // Try after navigation (SPA)\n var lastUrl = location.href;\n setInterval(function() {\n if (location.href !== lastUrl) {\n lastUrl = location.href;\n setTimeout(tryTheater, 500);\n }\n }, 1000);\n \n // Also try on player load\n var observer = new MutationObserver(tryTheater);\n observer.observe(document.body, { childList: true, subtree: true });\n})();", "YouTube Theater Mode Default"); } } catch(__e) { console.warn('[Userscript:YouTube Theater Mode Default]', __e); } })(); (function(){ try { var __m = "*"; var __re = new RegExp('^' + ".*" + '
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crakshay1/README.md

Bonjour, it's Akshay ! 👋

PythonRSQLBashJava

Master’s Student in Bioinformatics at Paris-Saclay | GENIOMHE Program.

While DNA codes for life, I dedicate my life to code for DNA.

And here are all projects I made, organized into lists.


🔬 Fields of Study

  • Gene Annotation: Identifying and characterizing genes and their functions.
  • Genomic Analysis: Comparative analysis of large-scale genomic datasets.
  • Genetic Diseases: Studying genetic variants and their links to diseases.

image
Are you gonna let your README feel alone again, Todo Aoi?

Pinned Loading

  1. HelixFlorHelixFlorPublic

    This repository contains some code snippets and the results of my internships revolving around GBOT, a genome browser.

    R 1

  2. BruAnnoPipeBruAnnoPipePublic

    BruAnnoPipe: Because Bruno doesn't have time to mask TEs by hand.

    Jupyter Notebook 1

  3. TEnderTEnderPublic

    On étudie dans ce projet les éléments transposables de l’Arabidopsis thaliana. L’objectif de ce projet est de concevoir une base de données regroupant l’ensemble des copies, ainsi que les copies de…

    Python 1

  4. BrunOOPBrunOOPPublic

    BrunOOP is a small Python machine-learning library that focuses on clean Object-Oriented Programming rather than high performance. Inspired by libraries like scikit-learn, it has a modular design t…

    Python 1

  5. ChromaPathChromaPathPublic

    Problème du voyageur du commerce avec des villes générées aléatoirement, avec leurs coordonnées exactes, dans un pays choisi par l'utilisateur. Plus de 130 pays sont sélectionnables via l'interface…

    Python 1

  6. georgyzaouk/COPunDgeorgyzaouk/COPunDPublic

    A simplified cellular automaton implementation of Dupin et al.'s model, simulating the spatial interactions between fibrocytes and CD8+ T lymphocytes in lung tissue under healthy and COPD conditions.

    Python 2

, 'i'); if (__m === '*' || __re.test(location.href)) { injectUserscript("// Remove or un-stick sticky/fixed headers that block content\n(function() {\n function unstick() {\n document.querySelectorAll('header, nav, [role=\"banner\"], .header, .navbar, .sticky, .fixed-top, [style*=\"position: fixed\"], [style*=\"position:sticky\"]').forEach(function(el) {\n if (el.style.position === 'fixed' || el.style.position === 'sticky' || \n getComputedStyle(el).position === 'fixed' || getComputedStyle(el).position === 'sticky') {\n el.style.position = 'static';\n el.style.top = 'auto';\n el.style.zIndex = 'auto';\n }\n });\n }\n \n unstick();\n \n var observer = new MutationObserver(unstick);\n observer.observe(document.body, { childList: true, subtree: true, attributes: true, attributeFilter: ['style', 'class'] });\n})();", "Kill Sticky Headers"); } } catch(__e) { console.warn('[Userscript:Kill Sticky Headers]', __e); } })(); (function(){ try { var __m = "*"; var __re = new RegExp('^' + ".*" + '
Skip to content
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crakshay1/README.md

Bonjour, it's Akshay ! 👋

PythonRSQLBashJava

Master’s Student in Bioinformatics at Paris-Saclay | GENIOMHE Program.

While DNA codes for life, I dedicate my life to code for DNA.

And here are all projects I made, organized into lists.


🔬 Fields of Study

  • Gene Annotation: Identifying and characterizing genes and their functions.
  • Genomic Analysis: Comparative analysis of large-scale genomic datasets.
  • Genetic Diseases: Studying genetic variants and their links to diseases.

image
Are you gonna let your README feel alone again, Todo Aoi?

Pinned Loading

  1. HelixFlorHelixFlorPublic

    This repository contains some code snippets and the results of my internships revolving around GBOT, a genome browser.

    R 1

  2. BruAnnoPipeBruAnnoPipePublic

    BruAnnoPipe: Because Bruno doesn't have time to mask TEs by hand.

    Jupyter Notebook 1

  3. TEnderTEnderPublic

    On étudie dans ce projet les éléments transposables de l’Arabidopsis thaliana. L’objectif de ce projet est de concevoir une base de données regroupant l’ensemble des copies, ainsi que les copies de…

    Python 1

  4. BrunOOPBrunOOPPublic

    BrunOOP is a small Python machine-learning library that focuses on clean Object-Oriented Programming rather than high performance. Inspired by libraries like scikit-learn, it has a modular design t…

    Python 1

  5. ChromaPathChromaPathPublic

    Problème du voyageur du commerce avec des villes générées aléatoirement, avec leurs coordonnées exactes, dans un pays choisi par l'utilisateur. Plus de 130 pays sont sélectionnables via l'interface…

    Python 1

  6. georgyzaouk/COPunDgeorgyzaouk/COPunDPublic

    A simplified cellular automaton implementation of Dupin et al.'s model, simulating the spatial interactions between fibrocytes and CD8+ T lymphocytes in lung tissue under healthy and COPD conditions.

    Python 2

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crakshay1/README.md

Bonjour, it's Akshay ! 👋

PythonRSQLBashJava

Master’s Student in Bioinformatics at Paris-Saclay | GENIOMHE Program.

While DNA codes for life, I dedicate my life to code for DNA.

And here are all projects I made, organized into lists.


🔬 Fields of Study

  • Gene Annotation: Identifying and characterizing genes and their functions.
  • Genomic Analysis: Comparative analysis of large-scale genomic datasets.
  • Genetic Diseases: Studying genetic variants and their links to diseases.

image
Are you gonna let your README feel alone again, Todo Aoi?

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  1. HelixFlorHelixFlorPublic

    This repository contains some code snippets and the results of my internships revolving around GBOT, a genome browser.

    R 1

  2. BruAnnoPipeBruAnnoPipePublic

    BruAnnoPipe: Because Bruno doesn't have time to mask TEs by hand.

    Jupyter Notebook 1

  3. TEnderTEnderPublic

    On étudie dans ce projet les éléments transposables de l’Arabidopsis thaliana. L’objectif de ce projet est de concevoir une base de données regroupant l’ensemble des copies, ainsi que les copies de…

    Python 1

  4. BrunOOPBrunOOPPublic

    BrunOOP is a small Python machine-learning library that focuses on clean Object-Oriented Programming rather than high performance. Inspired by libraries like scikit-learn, it has a modular design t…

    Python 1

  5. ChromaPathChromaPathPublic

    Problème du voyageur du commerce avec des villes générées aléatoirement, avec leurs coordonnées exactes, dans un pays choisi par l'utilisateur. Plus de 130 pays sont sélectionnables via l'interface…

    Python 1

  6. georgyzaouk/COPunDgeorgyzaouk/COPunDPublic

    A simplified cellular automaton implementation of Dupin et al.'s model, simulating the spatial interactions between fibrocytes and CD8+ T lymphocytes in lung tissue under healthy and COPD conditions.

    Python 2