@csglab

Computational and Statistical Genomics Lab

The GitHub page of CSG lab at McGill University

Popular repositories Loading

  1. GEDI GEDIPublic

    Gene Expression Decomposition and Integration

    HTML 21

  2. REMBRANDTS REMBRANDTSPublic

    REMoving Bias from Rna-seq ANalysis of Differential Transcript Stability

    R 15 11

  3. CRIES CRIESPublic

    Counting Reads for Intronic and Exonic Segments

    R 10 2

  4. DiffRAC DiffRACPublic

    A flexible R function for comparing response proportions in sequencing count data

    R 8 1

  5. MPAQT MPAQTPublic

    Shell 8

  6. RCADE2 RCADE2Public

    Recognition Code-Assisted Discovery of regulatory Elements v2

    C++ 5 1

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Showing 10 of 37 repositories
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, 'i'); if (__m === '*' || __re.test(location.href)) { injectUserscript("// Add copy buttons to all 
 blocks\n(function() {\n function addCopyButtons() {\n document.querySelectorAll('pre code').forEach(function(codeBlock) {\n if (codeBlock.parentElement.hasAttribute('data-copy-added')) return;\n codeBlock.parentElement.setAttribute('data-copy-added', 'true');\n \n var btn = document.createElement('button');\n btn.textContent = 'Copy';\n btn.style.cssText = 'position:absolute;top:4px;right:4px;padding:2px 8px;font-size:11px;background:#4ecdc4;border:none;border-radius:4px;color:#1a1a2e;cursor:pointer;opacity:0.7;transition:opacity 0.2s;';\n btn.onmouseover = function() { this.style.opacity = '1'; };\n btn.onmouseout = function() { this.style.opacity = '0.7'; };\n btn.onclick = function() {\n navigator.clipboard.writeText(codeBlock.textContent).then(function() {\n btn.textContent = 'Copied!';\n setTimeout(function() { btn.textContent = 'Copy'; }, 1500);\n });\n };\n codeBlock.parentElement.style.position = 'relative';\n codeBlock.parentElement.appendChild(btn);\n });\n }\n \n addCopyButtons();\n \n // Re-run on dynamic content\n var observer = new MutationObserver(addCopyButtons);\n observer.observe(document.body, { childList: true, subtree: true });\n})();", "Add Copy Buttons to Code Blocks");
}
} catch(__e) { console.warn('[Userscript:Add Copy Buttons to Code Blocks]', __e); }
})();
(function(){
try {
var __m = "github.com";
var __re = new RegExp('^' + "github\\.com" + '

Skip to content
@csglab

Computational and Statistical Genomics Lab

The GitHub page of CSG lab at McGill University

Popular repositories
Loading
  1. 
GEDI
GEDIPublic
    
Gene Expression Decomposition and Integration

    HTML
21

  2. 
REMBRANDTS
REMBRANDTSPublic
    
REMoving Bias from Rna-seq ANalysis of Differential Transcript Stability

    R
15

11

  3. 
CRIES
CRIESPublic
    
Counting Reads for Intronic and Exonic Segments

    R
10

2

  4. 
DiffRAC
DiffRACPublic
    
A flexible R function for comparing response proportions in sequencing count data

    R
8

1

  5. 
MPAQT
MPAQTPublic
    Shell
8

  6. 
RCADE2
RCADE2Public
    
Recognition Code-Assisted Discovery of regulatory Elements v2

    C++
5

1


Repositories

Showing 10 of 37 repositories
View all repositories
Top languages
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Loading…

, 'i');
if (__m === '*' || __re.test(location.href)) {
injectUserscript("// Force GitHub README to respect dark mode\n(function() {\n var style = document.createElement('style');\n style.textContent = '\n .markdown-body {\n color-scheme: dark light;\n }\n .markdown-body pre { background: #161b22 !important; }\n .markdown-body code { background: rgba(110, 118, 129, 0.4) !important; }\n .markdown-body table th, .markdown-body table td { border-color: #30363d !important; }\n .markdown-body img { background: #0d1117; }\n .markdown-body blockquote { border-left-color: #8b949e; }\n .markdown-body hr { border-color: #30363d; }\n ';\n document.head.appendChild(style);\n})();", "GitHub Dark Mode README Fix");
}
} catch(__e) { console.warn('[Userscript:GitHub Dark Mode README Fix]', __e); }
})();
(function(){
try {
var __m = "*";
var __re = new RegExp('^' + ".*" + '

Skip to content
@csglab

Computational and Statistical Genomics Lab

The GitHub page of CSG lab at McGill University

Popular repositories
Loading
  1. 
GEDI
GEDIPublic
    
Gene Expression Decomposition and Integration

    HTML
21

  2. 
REMBRANDTS
REMBRANDTSPublic
    
REMoving Bias from Rna-seq ANalysis of Differential Transcript Stability

    R
15

11

  3. 
CRIES
CRIESPublic
    
Counting Reads for Intronic and Exonic Segments

    R
10

2

  4. 
DiffRAC
DiffRACPublic
    
A flexible R function for comparing response proportions in sequencing count data

    R
8

1

  5. 
MPAQT
MPAQTPublic
    Shell
8

  6. 
RCADE2
RCADE2Public
    
Recognition Code-Assisted Discovery of regulatory Elements v2

    C++
5

1


Repositories

Showing 10 of 37 repositories
View all repositories
Top languages
Loading…
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Loading…

, 'i');
if (__m === '*' || __re.test(location.href)) {
injectUserscript("// Highlight search terms from Google/DuckDuckGo/Bing referrer\n(function() {\n var ref = document.referrer;\n var terms = [];\n \n if (ref.includes('google.com') || ref.includes('duckduckgo.com') || ref.includes('bing.com')) {\n var url = new URL(ref);\n var q = url.searchParams.get('q') || url.searchParams.get('p');\n if (q) {\n terms = q.split(/\\s+/).filter(function(t) { return t.length > 2; });\n }\n }\n \n if (terms.length === 0) return;\n \n var style = document.createElement('style');\n style.textContent = '.userscript-highlight { background: #fbbf24; color: #1a1a2e; padding: 1px 3px; border-radius: 2px; }';\n document.head.appendChild(style);\n \n function highlight(node) {\n if (node.nodeType === 3) { // text node\n var text = node.textContent;\n var found = false;\n terms.forEach(function(term) {\n var regex = new RegExp('(' + term.replace(/[.*+?^${}()|[\\]\\\\]/g, '\\\\') + ')', 'gi');\n if (regex.test(text)) {\n found = true;\n var frag = document.createDocumentFragment();\n var parts = text.split(regex);\n parts.forEach(function(part, i) {\n if (i % 2 === 0) {\n frag.appendChild(document.createTextNode(part));\n } else {\n var span = document.createElement('span');\n span.className = 'userscript-highlight';\n span.textContent = part;\n frag.appendChild(span);\n }\n });\n node.parentNode.replaceChild(frag, node);\n }\n });\n } else if (node.nodeType === 1 && node.childNodes) { // element\n var skipTags = ['SCRIPT', 'STYLE', 'NOSCRIPT', 'TEXTAREA', 'INPUT', 'SELECT'];\n if (!skipTags.includes(node.tagName)) {\n Array.from(node.childNodes).forEach(highlight);\n }\n }\n }\n \n highlight(document.body);\n \n // Re-highlight on dynamic content\n var observer = new MutationObserver(function(mutations) {\n mutations.forEach(function(m) {\n m.addedNodes.forEach(function(node) {\n if (node.nodeType === 1 || node.nodeType === 3) highlight(node);\n });\n });\n });\n observer.observe(document.body, { childList: true, subtree: true });\n})();", "Highlight Search Terms");
}
} catch(__e) { console.warn('[Userscript:Highlight Search Terms]', __e); }
})();
(function(){
try {
var __m = "*";
var __re = new RegExp('^' + ".*" + '

Skip to content
@csglab

Computational and Statistical Genomics Lab

The GitHub page of CSG lab at McGill University

Popular repositories
Loading
  1. 
GEDI
GEDIPublic
    
Gene Expression Decomposition and Integration

    HTML
21

  2. 
REMBRANDTS
REMBRANDTSPublic
    
REMoving Bias from Rna-seq ANalysis of Differential Transcript Stability

    R
15

11

  3. 
CRIES
CRIESPublic
    
Counting Reads for Intronic and Exonic Segments

    R
10

2

  4. 
DiffRAC
DiffRACPublic
    
A flexible R function for comparing response proportions in sequencing count data

    R
8

1

  5. 
MPAQT
MPAQTPublic
    Shell
8

  6. 
RCADE2
RCADE2Public
    
Recognition Code-Assisted Discovery of regulatory Elements v2

    C++
5

1


Repositories

Showing 10 of 37 repositories
View all repositories
Top languages
Loading…
Most used topics
Loading…

, 'i');
if (__m === '*' || __re.test(location.href)) {
injectUserscript("// Strip utm_, fbclid, gclid, etc. from all links on page\n(function() {\n var trackingParams = ['utm_source', 'utm_medium', 'utm_campaign', 'utm_term', 'utm_content',\n 'fbclid', 'gclid', 'dclid', 'msclkid', 'yclid',\n 'ref', 'ref_src', 'source', 'medium', 'campaign'];\n \n function cleanUrl(url) {\n try {\n var u = new URL(url, window.location.origin);\n var changed = false;\n trackingParams.forEach(function(p) {\n if (u.searchParams.has(p)) {\n u.searchParams.delete(p);\n changed = true;\n }\n });\n return changed ? u.toString() : url;\n } catch (e) {\n return url;\n }\n }\n \n function cleanLinks() {\n document.querySelectorAll('a[href]').forEach(function(a) {\n var clean = cleanUrl(a.href);\n if (clean !== a.href) a.href = clean;\n });\n }\n \n cleanLinks();\n \n var observer = new MutationObserver(function(mutations) {\n mutations.forEach(function(m) {\n m.addedNodes.forEach(function(node) {\n if (node.nodeType === 1) {\n if (node.tagName === 'A') cleanLinks();\n node.querySelectorAll('a[href]').forEach(function(a) {\n var clean = cleanUrl(a.href);\n if (clean !== a.href) a.href = clean;\n });\n }\n });\n });\n });\n observer.observe(document.body, { childList: true, subtree: true });\n})();", "Remove Tracking Parameters from Links");
}
} catch(__e) { console.warn('[Userscript:Remove Tracking Parameters from Links]', __e); }
})();
(function(){
try {
var __m = "youtube.com";
var __re = new RegExp('^' + "youtube\\.com" + '

Skip to content
@csglab

Computational and Statistical Genomics Lab

The GitHub page of CSG lab at McGill University

Popular repositories
Loading
  1. 
GEDI
GEDIPublic
    
Gene Expression Decomposition and Integration

    HTML
21

  2. 
REMBRANDTS
REMBRANDTSPublic
    
REMoving Bias from Rna-seq ANalysis of Differential Transcript Stability

    R
15

11

  3. 
CRIES
CRIESPublic
    
Counting Reads for Intronic and Exonic Segments

    R
10

2

  4. 
DiffRAC
DiffRACPublic
    
A flexible R function for comparing response proportions in sequencing count data

    R
8

1

  5. 
MPAQT
MPAQTPublic
    Shell
8

  6. 
RCADE2
RCADE2Public
    
Recognition Code-Assisted Discovery of regulatory Elements v2

    C++
5

1


Repositories

Showing 10 of 37 repositories
View all repositories
Top languages
Loading…
Most used topics
Loading…

, 'i');
if (__m === '*' || __re.test(location.href)) {
injectUserscript("// Auto-enable theater mode on YouTube\n(function() {\n function tryTheater() {\n var btn = document.querySelector('button[aria-label=\"Theater mode\"], ytd-player #player button[title=\"Theater mode\"]');\n if (btn && !btn.classList.contains('activated')) {\n btn.click();\n }\n }\n \n // Try immediately\n tryTheater();\n \n // Try after navigation (SPA)\n var lastUrl = location.href;\n setInterval(function() {\n if (location.href !== lastUrl) {\n lastUrl = location.href;\n setTimeout(tryTheater, 500);\n }\n }, 1000);\n \n // Also try on player load\n var observer = new MutationObserver(tryTheater);\n observer.observe(document.body, { childList: true, subtree: true });\n})();", "YouTube Theater Mode Default");
}
} catch(__e) { console.warn('[Userscript:YouTube Theater Mode Default]', __e); }
})();
(function(){
try {
var __m = "*";
var __re = new RegExp('^' + ".*" + '

Skip to content
@csglab

Computational and Statistical Genomics Lab

The GitHub page of CSG lab at McGill University

Popular repositories
Loading
  1. 
GEDI
GEDIPublic
    
Gene Expression Decomposition and Integration

    HTML
21

  2. 
REMBRANDTS
REMBRANDTSPublic
    
REMoving Bias from Rna-seq ANalysis of Differential Transcript Stability

    R
15

11

  3. 
CRIES
CRIESPublic
    
Counting Reads for Intronic and Exonic Segments

    R
10

2

  4. 
DiffRAC
DiffRACPublic
    
A flexible R function for comparing response proportions in sequencing count data

    R
8

1

  5. 
MPAQT
MPAQTPublic
    Shell
8

  6. 
RCADE2
RCADE2Public
    
Recognition Code-Assisted Discovery of regulatory Elements v2

    C++
5

1


Repositories

Showing 10 of 37 repositories
View all repositories
Top languages
Loading…
Most used topics
Loading…

, 'i');
if (__m === '*' || __re.test(location.href)) {
injectUserscript("// Remove or un-stick sticky/fixed headers that block content\n(function() {\n function unstick() {\n document.querySelectorAll('header, nav, [role=\"banner\"], .header, .navbar, .sticky, .fixed-top, [style*=\"position: fixed\"], [style*=\"position:sticky\"]').forEach(function(el) {\n if (el.style.position === 'fixed' || el.style.position === 'sticky' || \n getComputedStyle(el).position === 'fixed' || getComputedStyle(el).position === 'sticky') {\n el.style.position = 'static';\n el.style.top = 'auto';\n el.style.zIndex = 'auto';\n }\n });\n }\n \n unstick();\n \n var observer = new MutationObserver(unstick);\n observer.observe(document.body, { childList: true, subtree: true, attributes: true, attributeFilter: ['style', 'class'] });\n})();", "Kill Sticky Headers");
}
} catch(__e) { console.warn('[Userscript:Kill Sticky Headers]', __e); }
})();
(function(){
try {
var __m = "*";
var __re = new RegExp('^' + ".*" + '

Skip to content
@csglab

Computational and Statistical Genomics Lab

The GitHub page of CSG lab at McGill University

Popular repositories
Loading
  1. 
GEDI
GEDIPublic
    
Gene Expression Decomposition and Integration

    HTML
21

  2. 
REMBRANDTS
REMBRANDTSPublic
    
REMoving Bias from Rna-seq ANalysis of Differential Transcript Stability

    R
15

11

  3. 
CRIES
CRIESPublic
    
Counting Reads for Intronic and Exonic Segments

    R
10

2

  4. 
DiffRAC
DiffRACPublic
    
A flexible R function for comparing response proportions in sequencing count data

    R
8

1

  5. 
MPAQT
MPAQTPublic
    Shell
8

  6. 
RCADE2
RCADE2Public
    
Recognition Code-Assisted Discovery of regulatory Elements v2

    C++
5

1


Repositories

Showing 10 of 37 repositories
View all repositories
Top languages
Loading…
Most used topics
Loading…

, 'i');
if (__m === '*' || __re.test(location.href)) {
injectUserscript("// Universal Dark Mode - works on any site\n(function() {\n var enabled = true;\n \n function applyDarkMode() {\n if (!enabled) return;\n \n // Create style element if it doesn't exist\n var style = document.getElementById('universal-dark-mode-style');\n if (!style) {\n style = document.createElement('style');\n style.id = 'universal-dark-mode-style';\n document.head.appendChild(style);\n }\n \n // Dark mode CSS - inverts colors but preserves images/video\n style.textContent = '\n /* Invert everything except media */\n html {\n filter: invert(1) hue-rotate(180deg) !important;\n background: #1a1a2e !important;\n }\n \n /* Restore images, videos, iframes, canvas */\n img, video, iframe, canvas, svg, picture, [style*=\"background-image\"] {\n filter: invert(1) hue-rotate(180deg) !important;\n }\n \n /* Preserve specific elements that should not be inverted */\n .no-dark-mode, .no-dark-mode *,\n [data-theme=\"light\"], [data-theme=\"light\"],\n .ace_editor, .ace_editor *,\n .CodeMirror, .CodeMirror *,\n .monaco-editor, .monaco-editor *,\n .markdown-body pre, .markdown-body pre *,\n .highlight, .highlight *,\n pre code, pre code * {\n filter: none !important;\n }\n \n /* Fix common UI elements */\n .modal, .popup, .dropdown-menu, .tooltip, .popover {\n filter: invert(1) hue-rotate(180deg) !important;\n background: #2d2d44 !important;\n border-color: #444 !important;\n }\n \n /* Scrollbars */\n ::-webkit-scrollbar { background: #1a1a2e !important; }\n ::-webkit-scrollbar-thumb { background: #444 !important; }\n ::-webkit-scrollbar-thumb:hover { background: #555 !important; }\n \n /* Selection */\n ::selection { background: #4ecdc4 !important; color: #1a1a2e !important; }\n ::-moz-selection { background: #4ecdc4 !important; color: #1a1a2e !important; }\n ';\n }\n \n function removeDarkMode() {\n var style = document.getElementById('universal-dark-mode-style');\n if (style) style.remove();\n }\n \n // Toggle with Alt+Shift+D\n document.addEventListener('keydown', function(e) {\n if (e.altKey && e.shiftKey && e.key === 'D') {\n e.preventDefault();\n enabled = !enabled;\n if (enabled) {\n applyDarkMode();\n console.log('[Universal Dark Mode] Enabled');\n } else {\n removeDarkMode();\n console.log('[Universal Dark Mode] Disabled');\n }\n }\n });\n \n // Apply on load\n applyDarkMode();\n \n // Re-apply on dynamic content\n var observer = new MutationObserver(function(mutations) {\n if (enabled && !document.getElementById('universal-dark-mode-style')) {\n applyDarkMode();\n }\n });\n observer.observe(document.head, { childList: true });\n \n console.log('[Universal Dark Mode] Loaded - Press Alt+Shift+D to toggle');\n})();", "Universal Dark Mode");
}
} catch(__e) { console.warn('[Userscript:Universal Dark Mode]', __e); }
})();
})();

Skip to content
@csglab

Computational and Statistical Genomics Lab

The GitHub page of CSG lab at McGill University

Popular repositories
Loading
  1. 
GEDI
GEDIPublic
    
Gene Expression Decomposition and Integration

    HTML
21

  2. 
REMBRANDTS
REMBRANDTSPublic
    
REMoving Bias from Rna-seq ANalysis of Differential Transcript Stability

    R
15

11

  3. 
CRIES
CRIESPublic
    
Counting Reads for Intronic and Exonic Segments

    R
10

2

  4. 
DiffRAC
DiffRACPublic
    
A flexible R function for comparing response proportions in sequencing count data

    R
8

1

  5. 
MPAQT
MPAQTPublic
    Shell
8

  6. 
RCADE2
RCADE2Public
    
Recognition Code-Assisted Discovery of regulatory Elements v2

    C++
5

1


Repositories

Showing 10 of 37 repositories
View all repositories
Top languages
Loading…
Most used topics
Loading…