Code for manuscripts published by Thompson and colleagues.
| Year | Code | Publication |
|---|---|---|
| 2019 | red-sea-single-cell-genomes | Thompson, L. R., Haroon, M. F., Shibl, A. A., Cahill, M. J., Ngugi, D. K., Williams, G. J., et al. (2019). Red Sea SAR11 and Prochlorococcus single-cell genomes reflect globally distributed pangenomes. Applied and Environmental Microbiology, 85(13). http://doi.org/10.1128/AEM.00369-19 |
| 2017 | biocore/emp | Thompson, L. R., Sanders, J. G., McDonald, D., Amir, A., Ladau, J., Locey, K. J., et al. (2017). A communal catalogue reveals Earth’s multiscale microbial diversity. Nature, 551, 457–463. http://doi.org/doi:10.1038/nature24621 |
| 2017 | vibrio-fischeri-transcriptomics | Thompson, L. R., Nikolakakis, K., Pan, S., Reed, J., Knight, R., & Ruby, E. G. (2017). Transcriptional characterization of Vibrio fischeri during colonization of juvenile Euprymna scolopes. Environmental Microbiology, 19(5), 1845–1856. http://doi.org/10.1111/1462-2920.13684 |
| 2016 | red-sea-spatial-series | Thompson, L. R., Williams, G. J., Haroon, M. F., Shibl, A., Larsen, P., Shorenstein, J., et al. (2016). Metagenomic covariation along densely sampled environmental gradients in the Red Sea. The ISME Journal, 11, 138–151. http://doi.org/doi:10.1038/ismej.2016.99 |
| 2016 | cyanophage-light-dark-transcriptomics | Thompson, L. R., Zeng, Q., & Chisholm, S. W. (2016). Gene expression patterns during light and dark infection of Prochlorococcus by cyanophage. PLOS ONE, 11(10), e0165375. http://doi.org/10.1371/journal.pone.0165375 |