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@cytomine

Cytomine

Collaborative analysis of multi-gigapixel images. Project managed by the University of Liège

Welcome to Cytomine 👋

Cytomine ULiège
📄 Website | 📚 Docs | 🔎 Image.sc | 📧 Contact Us

What is Cytomine?

Cytomine is an open-source software platform designed for managing and analysing large-scale imaging data, particularly in the field of bioinformatics and digital pathology. It enables collaborative analysis by allowing multiple users to work together on the same set of images, providing tools for annotation, sharing, and commenting. It provides tools for the storage, visualisation, and annotation of images, as well as for integrating machine learning models into image analysis workflows.

Getting Started

Ready to explore Cytomine? Here are a few ways to begin:

  1. Try Cytomine

  2. Explore Repositories

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  1. cytomine cytomine Public

    A web platform for collaborative analysis of very large bio-medical images

    Java 24 10

  2. cytomine-app-store cytomine-app-store Public

    Cytomine App Store

    Java 1

Repositories

Showing 10 of 60 repositories
  • cytomine Public

    A web platform for collaborative analysis of very large bio-medical images

    cytomine/cytomine's past year of commit activity
    Java 24 Apache-2.0 10 109 8 Updated Sep 18, 2026
  • task-stardist Public

    Integration of Stardist algorithm as a Cytomine task

    cytomine/task-stardist's past year of commit activity
    Python 1 Apache-2.0 0 0 0 Updated Jul 28, 2026
  • cytomine-app-store Public

    Cytomine App Store

    cytomine/cytomine-app-store's past year of commit activity
    Java 1 Apache-2.0 0 7 12 Updated Apr 15, 2026
  • dummy-tasks Public

    Dummy tasks to test/showcase the app-engine service in Cytomine.

    cytomine/dummy-tasks's past year of commit activity
    Dockerfile 0 Apache-2.0 0 0 0 Updated Dec 2, 2025
  • .github Public

    Community health files for the @cytomine organisation

    cytomine/.github's past year of commit activity
    0 0 0 0 Updated Dec 2, 2025
  • bigpicture-utils Public

    Helper scripts and utilities for BIGPICTURE.

    cytomine/bigpicture-utils's past year of commit activity
    Shell 0 Apache-2.0 0 0 0 Updated Nov 13, 2025
  • cytomine-helm Public archive

    Helm chart to deploy Cytomine on Kubernetes

    cytomine/cytomine-helm's past year of commit activity
    Smarty 0 Apache-2.0 0 0 0 Updated Oct 14, 2025
  • Cytomine-pims Public archive Forked from Cytomine-ULiege/Cytomine-pims

    Python Image Management Server

    cytomine/Cytomine-pims's past year of commit activity
    Python 3 Apache-2.0 8 3 0 Updated Oct 1, 2025
  • registry-client Public archive Forked from ya-b/registry-client

    A java client for docker registry api v2

    cytomine/registry-client's past year of commit activity
    Java 0 Apache-2.0 3 0 1 Updated Oct 1, 2025
  • Cytomine-IAM Public archive

    Identity and Access Management for Cytomine

    cytomine/Cytomine-IAM's past year of commit activity
    Dockerfile 0 Apache-2.0 0 0 0 Updated Oct 1, 2025

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