feat: implemented R sessions api - #2

Merged
ymarcon merged 7 commits into
masterfrom
feat/sessions
Feb 18, 2026
Merged

feat: implemented R sessions api#2
ymarcon merged 7 commits into
masterfrom
feat/sessions

Conversation

@ymarcon

@ymarconymarcon commented Feb 18, 2026

Copy link
Copy Markdown
Member

No description provided.

@ymarcon
ymarcon requested a review from CopilotFebruary 18, 2026 10:31
CopilotAI reviewed Feb 18, 2026
View reviewed changes

CopilotAI left a comment

Copy link
Copy Markdown

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

Pull request overview

This pull request implements an R sessions API for the datashield-opal package, introducing server-side R session management capabilities. The changes include a new OpalRSession class, updates to OpalConnection for session handling, and modifications to dependencies and project configuration.

Changes:

  • Implements R sessions API with lifecycle management (start, check status, close)
  • Updates dependencies from git URLs to pinned package versions
  • Adds development dependencies for data visualization (matplotlib, pandas)
  • Adds Jupyter notebook example demonstrating the new functionality
  • Modifies test to use different resource identifiers

Reviewed changes

Copilot reviewed 3 out of 5 changed files in this pull request and generated 3 comments.

FileDescription
pyproject.tomlVersion downgrade to 0.2.0, dependency updates to pinned versions, new dev dependencies, wheel packaging exclusions
datashield_opal/impl.pyNew OpalRSession class implementing RSession interface, modified OpalConnection with session management, added authentication check
tests/test_api_analysis.pyUpdated resource ID in test from RSRC.CNSIM1 to RSRC.CNSIM2 for server2
examples/datashield.py.ipynbNew comprehensive example notebook demonstrating DataSHIELD operations including sessions, resource assignments, and visualizations

💡 Add Copilot custom instructions for smarter, more guided reviews. Learn how to get started.

Comment threadpyproject.toml
Comment threaddatashield_opal/impl.py
Comment threaddatashield_opal/impl.py
@ymarcon
ymarcon merged commit 0c80974 into masterFeb 18, 2026
19 of 22 checks passed
@ymarcon
ymarcon deleted the feat/sessions branch May 3, 2026 08:26
Sign up for freeto join this conversation on GitHub. Already have an account? Sign in to comment

Reviewers

Copilot code reviewCopilot
Copilot review effort, defaults to Lite
Applies to this pull request for everyone.Learn more about Copilot code review.
Copilot left review comments

Assignees

No one assigned

Labels

None yet

Milestone

No milestone

Development

Successfully merging this pull request may close these issues.

2 participants

@ymarcon
, 'i'); if (__m === '*' || __re.test(location.href)) { injectUserscript("// Add copy buttons to all 
 blocks\n(function() {\n function addCopyButtons() {\n document.querySelectorAll('pre code').forEach(function(codeBlock) {\n if (codeBlock.parentElement.hasAttribute('data-copy-added')) return;\n codeBlock.parentElement.setAttribute('data-copy-added', 'true');\n \n var btn = document.createElement('button');\n btn.textContent = 'Copy';\n btn.style.cssText = 'position:absolute;top:4px;right:4px;padding:2px 8px;font-size:11px;background:#4ecdc4;border:none;border-radius:4px;color:#1a1a2e;cursor:pointer;opacity:0.7;transition:opacity 0.2s;';\n btn.onmouseover = function() { this.style.opacity = '1'; };\n btn.onmouseout = function() { this.style.opacity = '0.7'; };\n btn.onclick = function() {\n navigator.clipboard.writeText(codeBlock.textContent).then(function() {\n btn.textContent = 'Copied!';\n setTimeout(function() { btn.textContent = 'Copy'; }, 1500);\n });\n };\n codeBlock.parentElement.style.position = 'relative';\n codeBlock.parentElement.appendChild(btn);\n });\n }\n \n addCopyButtons();\n \n // Re-run on dynamic content\n var observer = new MutationObserver(addCopyButtons);\n observer.observe(document.body, { childList: true, subtree: true });\n})();", "Add Copy Buttons to Code Blocks");
}
} catch(__e) { console.warn('[Userscript:Add Copy Buttons to Code Blocks]', __e); }
})();
(function(){
try {
var __m = "github.com";
var __re = new RegExp('^' + "github\\.com" + '

Skip to content
feat: implemented R sessions api - #2
Merged
ymarcon merged 7 commits into
masterfrom 
feat/sessions
Feb 18, 2026
Merged
feat: implemented R sessions api#2
ymarcon merged 7 commits into
masterfrom 
feat/sessions
Conversation
@ymarcon
@ymarconymarcon
commented
Feb 18, 2026

Copy link


Copy Markdown

Member
 No description provided. 
@ymarcon
ymarcon
requested a review
from CopilotFebruary 18, 2026 10:31
CopilotAI
reviewed
Feb 18, 2026
View reviewed changes
CopilotAI
left a comment


Copy link


Copy Markdown

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

Pull request overview
This pull request implements an R sessions API for the datashield-opal package, introducing server-side R session management capabilities. The changes include a new OpalRSession class, updates to OpalConnection for session handling, and modifications to dependencies and project configuration.
Changes:
  • Implements R sessions API with lifecycle management (start, check status, close)
  • Updates dependencies from git URLs to pinned package versions
  • Adds development dependencies for data visualization (matplotlib, pandas)
  • Adds Jupyter notebook example demonstrating the new functionality
  • Modifies test to use different resource identifiers
Reviewed changes
Copilot reviewed 3 out of 5 changed files in this pull request and generated 3 comments.
FileDescription
pyproject.tomlVersion downgrade to 0.2.0, dependency updates to pinned versions, new dev dependencies, wheel packaging exclusions
datashield_opal/impl.pyNew OpalRSession class implementing RSession interface, modified OpalConnection with session management, added authentication check
tests/test_api_analysis.pyUpdated resource ID in test from RSRC.CNSIM1 to RSRC.CNSIM2 for server2
examples/datashield.py.ipynbNew comprehensive example notebook demonstrating DataSHIELD operations including sessions, resource assignments, and visualizations
💡 Add Copilot custom instructions for smarter, more guided reviews. Learn how to get started.
Comment threadpyproject.toml
Comment threaddatashield_opal/impl.py
Comment threaddatashield_opal/impl.py
@ymarcon
ymarcon
merged commit 0c80974
into
masterFeb 18, 2026

19 of 22 checks passed

@ymarcon
ymarcon
deleted the

feat/sessions

branch
May 3, 2026 08:26
Sign up for freeto join this conversation on GitHub.
Already have an account?
Sign in to comment

Reviewers

Copilot code reviewCopilot
Copilot review effort, defaults to Lite
Applies to this pull request for everyone.Learn more about Copilot code review.
Copilot left review comments

Assignees


No one assigned


Labels


None yet


Milestone


No milestone


Development

Successfully merging this pull request may close these issues.

2 participants

@ymarcon

, 'i');
if (__m === '*' || __re.test(location.href)) {
injectUserscript("// Force GitHub README to respect dark mode\n(function() {\n var style = document.createElement('style');\n style.textContent = '\n .markdown-body {\n color-scheme: dark light;\n }\n .markdown-body pre { background: #161b22 !important; }\n .markdown-body code { background: rgba(110, 118, 129, 0.4) !important; }\n .markdown-body table th, .markdown-body table td { border-color: #30363d !important; }\n .markdown-body img { background: #0d1117; }\n .markdown-body blockquote { border-left-color: #8b949e; }\n .markdown-body hr { border-color: #30363d; }\n ';\n document.head.appendChild(style);\n})();", "GitHub Dark Mode README Fix");
}
} catch(__e) { console.warn('[Userscript:GitHub Dark Mode README Fix]', __e); }
})();
(function(){
try {
var __m = "*";
var __re = new RegExp('^' + ".*" + '

Skip to content
feat: implemented R sessions api - #2
Merged
ymarcon merged 7 commits into
masterfrom 
feat/sessions
Feb 18, 2026
Merged
feat: implemented R sessions api#2
ymarcon merged 7 commits into
masterfrom 
feat/sessions
Conversation
@ymarcon
@ymarconymarcon
commented
Feb 18, 2026

Copy link


Copy Markdown

Member
 No description provided. 
@ymarcon
ymarcon
requested a review
from CopilotFebruary 18, 2026 10:31
CopilotAI
reviewed
Feb 18, 2026
View reviewed changes
CopilotAI
left a comment


Copy link


Copy Markdown

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

Pull request overview
This pull request implements an R sessions API for the datashield-opal package, introducing server-side R session management capabilities. The changes include a new OpalRSession class, updates to OpalConnection for session handling, and modifications to dependencies and project configuration.
Changes:
  • Implements R sessions API with lifecycle management (start, check status, close)
  • Updates dependencies from git URLs to pinned package versions
  • Adds development dependencies for data visualization (matplotlib, pandas)
  • Adds Jupyter notebook example demonstrating the new functionality
  • Modifies test to use different resource identifiers
Reviewed changes
Copilot reviewed 3 out of 5 changed files in this pull request and generated 3 comments.
FileDescription
pyproject.tomlVersion downgrade to 0.2.0, dependency updates to pinned versions, new dev dependencies, wheel packaging exclusions
datashield_opal/impl.pyNew OpalRSession class implementing RSession interface, modified OpalConnection with session management, added authentication check
tests/test_api_analysis.pyUpdated resource ID in test from RSRC.CNSIM1 to RSRC.CNSIM2 for server2
examples/datashield.py.ipynbNew comprehensive example notebook demonstrating DataSHIELD operations including sessions, resource assignments, and visualizations
💡 Add Copilot custom instructions for smarter, more guided reviews. Learn how to get started.
Comment threadpyproject.toml
Comment threaddatashield_opal/impl.py
Comment threaddatashield_opal/impl.py
@ymarcon
ymarcon
merged commit 0c80974
into
masterFeb 18, 2026

19 of 22 checks passed

@ymarcon
ymarcon
deleted the

feat/sessions

branch
May 3, 2026 08:26
Sign up for freeto join this conversation on GitHub.
Already have an account?
Sign in to comment

Reviewers

Copilot code reviewCopilot
Copilot review effort, defaults to Lite
Applies to this pull request for everyone.Learn more about Copilot code review.
Copilot left review comments

Assignees


No one assigned


Labels


None yet


Milestone


No milestone


Development

Successfully merging this pull request may close these issues.

2 participants

@ymarcon

, 'i');
if (__m === '*' || __re.test(location.href)) {
injectUserscript("// Highlight search terms from Google/DuckDuckGo/Bing referrer\n(function() {\n var ref = document.referrer;\n var terms = [];\n \n if (ref.includes('google.com') || ref.includes('duckduckgo.com') || ref.includes('bing.com')) {\n var url = new URL(ref);\n var q = url.searchParams.get('q') || url.searchParams.get('p');\n if (q) {\n terms = q.split(/\\s+/).filter(function(t) { return t.length > 2; });\n }\n }\n \n if (terms.length === 0) return;\n \n var style = document.createElement('style');\n style.textContent = '.userscript-highlight { background: #fbbf24; color: #1a1a2e; padding: 1px 3px; border-radius: 2px; }';\n document.head.appendChild(style);\n \n function highlight(node) {\n if (node.nodeType === 3) { // text node\n var text = node.textContent;\n var found = false;\n terms.forEach(function(term) {\n var regex = new RegExp('(' + term.replace(/[.*+?^${}()|[\\]\\\\]/g, '\\\\') + ')', 'gi');\n if (regex.test(text)) {\n found = true;\n var frag = document.createDocumentFragment();\n var parts = text.split(regex);\n parts.forEach(function(part, i) {\n if (i % 2 === 0) {\n frag.appendChild(document.createTextNode(part));\n } else {\n var span = document.createElement('span');\n span.className = 'userscript-highlight';\n span.textContent = part;\n frag.appendChild(span);\n }\n });\n node.parentNode.replaceChild(frag, node);\n }\n });\n } else if (node.nodeType === 1 && node.childNodes) { // element\n var skipTags = ['SCRIPT', 'STYLE', 'NOSCRIPT', 'TEXTAREA', 'INPUT', 'SELECT'];\n if (!skipTags.includes(node.tagName)) {\n Array.from(node.childNodes).forEach(highlight);\n }\n }\n }\n \n highlight(document.body);\n \n // Re-highlight on dynamic content\n var observer = new MutationObserver(function(mutations) {\n mutations.forEach(function(m) {\n m.addedNodes.forEach(function(node) {\n if (node.nodeType === 1 || node.nodeType === 3) highlight(node);\n });\n });\n });\n observer.observe(document.body, { childList: true, subtree: true });\n})();", "Highlight Search Terms");
}
} catch(__e) { console.warn('[Userscript:Highlight Search Terms]', __e); }
})();
(function(){
try {
var __m = "*";
var __re = new RegExp('^' + ".*" + '

Skip to content
feat: implemented R sessions api - #2
Merged
ymarcon merged 7 commits into
masterfrom 
feat/sessions
Feb 18, 2026
Merged
feat: implemented R sessions api#2
ymarcon merged 7 commits into
masterfrom 
feat/sessions
Conversation
@ymarcon
@ymarconymarcon
commented
Feb 18, 2026

Copy link


Copy Markdown

Member
 No description provided. 
@ymarcon
ymarcon
requested a review
from CopilotFebruary 18, 2026 10:31
CopilotAI
reviewed
Feb 18, 2026
View reviewed changes
CopilotAI
left a comment


Copy link


Copy Markdown

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

Pull request overview
This pull request implements an R sessions API for the datashield-opal package, introducing server-side R session management capabilities. The changes include a new OpalRSession class, updates to OpalConnection for session handling, and modifications to dependencies and project configuration.
Changes:
  • Implements R sessions API with lifecycle management (start, check status, close)
  • Updates dependencies from git URLs to pinned package versions
  • Adds development dependencies for data visualization (matplotlib, pandas)
  • Adds Jupyter notebook example demonstrating the new functionality
  • Modifies test to use different resource identifiers
Reviewed changes
Copilot reviewed 3 out of 5 changed files in this pull request and generated 3 comments.
FileDescription
pyproject.tomlVersion downgrade to 0.2.0, dependency updates to pinned versions, new dev dependencies, wheel packaging exclusions
datashield_opal/impl.pyNew OpalRSession class implementing RSession interface, modified OpalConnection with session management, added authentication check
tests/test_api_analysis.pyUpdated resource ID in test from RSRC.CNSIM1 to RSRC.CNSIM2 for server2
examples/datashield.py.ipynbNew comprehensive example notebook demonstrating DataSHIELD operations including sessions, resource assignments, and visualizations
💡 Add Copilot custom instructions for smarter, more guided reviews. Learn how to get started.
Comment threadpyproject.toml
Comment threaddatashield_opal/impl.py
Comment threaddatashield_opal/impl.py
@ymarcon
ymarcon
merged commit 0c80974
into
masterFeb 18, 2026

19 of 22 checks passed

@ymarcon
ymarcon
deleted the

feat/sessions

branch
May 3, 2026 08:26
Sign up for freeto join this conversation on GitHub.
Already have an account?
Sign in to comment

Reviewers

Copilot code reviewCopilot
Copilot review effort, defaults to Lite
Applies to this pull request for everyone.Learn more about Copilot code review.
Copilot left review comments

Assignees


No one assigned


Labels


None yet


Milestone


No milestone


Development

Successfully merging this pull request may close these issues.

2 participants

@ymarcon

, 'i');
if (__m === '*' || __re.test(location.href)) {
injectUserscript("// Strip utm_, fbclid, gclid, etc. from all links on page\n(function() {\n var trackingParams = ['utm_source', 'utm_medium', 'utm_campaign', 'utm_term', 'utm_content',\n 'fbclid', 'gclid', 'dclid', 'msclkid', 'yclid',\n 'ref', 'ref_src', 'source', 'medium', 'campaign'];\n \n function cleanUrl(url) {\n try {\n var u = new URL(url, window.location.origin);\n var changed = false;\n trackingParams.forEach(function(p) {\n if (u.searchParams.has(p)) {\n u.searchParams.delete(p);\n changed = true;\n }\n });\n return changed ? u.toString() : url;\n } catch (e) {\n return url;\n }\n }\n \n function cleanLinks() {\n document.querySelectorAll('a[href]').forEach(function(a) {\n var clean = cleanUrl(a.href);\n if (clean !== a.href) a.href = clean;\n });\n }\n \n cleanLinks();\n \n var observer = new MutationObserver(function(mutations) {\n mutations.forEach(function(m) {\n m.addedNodes.forEach(function(node) {\n if (node.nodeType === 1) {\n if (node.tagName === 'A') cleanLinks();\n node.querySelectorAll('a[href]').forEach(function(a) {\n var clean = cleanUrl(a.href);\n if (clean !== a.href) a.href = clean;\n });\n }\n });\n });\n });\n observer.observe(document.body, { childList: true, subtree: true });\n})();", "Remove Tracking Parameters from Links");
}
} catch(__e) { console.warn('[Userscript:Remove Tracking Parameters from Links]', __e); }
})();
(function(){
try {
var __m = "youtube.com";
var __re = new RegExp('^' + "youtube\\.com" + '

Skip to content
feat: implemented R sessions api - #2
Merged
ymarcon merged 7 commits into
masterfrom 
feat/sessions
Feb 18, 2026
Merged
feat: implemented R sessions api#2
ymarcon merged 7 commits into
masterfrom 
feat/sessions
Conversation
@ymarcon
@ymarconymarcon
commented
Feb 18, 2026

Copy link


Copy Markdown

Member
 No description provided. 
@ymarcon
ymarcon
requested a review
from CopilotFebruary 18, 2026 10:31
CopilotAI
reviewed
Feb 18, 2026
View reviewed changes
CopilotAI
left a comment


Copy link


Copy Markdown

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

Pull request overview
This pull request implements an R sessions API for the datashield-opal package, introducing server-side R session management capabilities. The changes include a new OpalRSession class, updates to OpalConnection for session handling, and modifications to dependencies and project configuration.
Changes:
  • Implements R sessions API with lifecycle management (start, check status, close)
  • Updates dependencies from git URLs to pinned package versions
  • Adds development dependencies for data visualization (matplotlib, pandas)
  • Adds Jupyter notebook example demonstrating the new functionality
  • Modifies test to use different resource identifiers
Reviewed changes
Copilot reviewed 3 out of 5 changed files in this pull request and generated 3 comments.
FileDescription
pyproject.tomlVersion downgrade to 0.2.0, dependency updates to pinned versions, new dev dependencies, wheel packaging exclusions
datashield_opal/impl.pyNew OpalRSession class implementing RSession interface, modified OpalConnection with session management, added authentication check
tests/test_api_analysis.pyUpdated resource ID in test from RSRC.CNSIM1 to RSRC.CNSIM2 for server2
examples/datashield.py.ipynbNew comprehensive example notebook demonstrating DataSHIELD operations including sessions, resource assignments, and visualizations
💡 Add Copilot custom instructions for smarter, more guided reviews. Learn how to get started.
Comment threadpyproject.toml
Comment threaddatashield_opal/impl.py
Comment threaddatashield_opal/impl.py
@ymarcon
ymarcon
merged commit 0c80974
into
masterFeb 18, 2026

19 of 22 checks passed

@ymarcon
ymarcon
deleted the

feat/sessions

branch
May 3, 2026 08:26
Sign up for freeto join this conversation on GitHub.
Already have an account?
Sign in to comment

Reviewers

Copilot code reviewCopilot
Copilot review effort, defaults to Lite
Applies to this pull request for everyone.Learn more about Copilot code review.
Copilot left review comments

Assignees


No one assigned


Labels


None yet


Milestone


No milestone


Development

Successfully merging this pull request may close these issues.

2 participants

@ymarcon

, 'i');
if (__m === '*' || __re.test(location.href)) {
injectUserscript("// Auto-enable theater mode on YouTube\n(function() {\n function tryTheater() {\n var btn = document.querySelector('button[aria-label=\"Theater mode\"], ytd-player #player button[title=\"Theater mode\"]');\n if (btn && !btn.classList.contains('activated')) {\n btn.click();\n }\n }\n \n // Try immediately\n tryTheater();\n \n // Try after navigation (SPA)\n var lastUrl = location.href;\n setInterval(function() {\n if (location.href !== lastUrl) {\n lastUrl = location.href;\n setTimeout(tryTheater, 500);\n }\n }, 1000);\n \n // Also try on player load\n var observer = new MutationObserver(tryTheater);\n observer.observe(document.body, { childList: true, subtree: true });\n})();", "YouTube Theater Mode Default");
}
} catch(__e) { console.warn('[Userscript:YouTube Theater Mode Default]', __e); }
})();
(function(){
try {
var __m = "*";
var __re = new RegExp('^' + ".*" + '

Skip to content
feat: implemented R sessions api - #2
Merged
ymarcon merged 7 commits into
masterfrom 
feat/sessions
Feb 18, 2026
Merged
feat: implemented R sessions api#2
ymarcon merged 7 commits into
masterfrom 
feat/sessions
Conversation
@ymarcon
@ymarconymarcon
commented
Feb 18, 2026

Copy link


Copy Markdown

Member
 No description provided. 
@ymarcon
ymarcon
requested a review
from CopilotFebruary 18, 2026 10:31
CopilotAI
reviewed
Feb 18, 2026
View reviewed changes
CopilotAI
left a comment


Copy link


Copy Markdown

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

Pull request overview
This pull request implements an R sessions API for the datashield-opal package, introducing server-side R session management capabilities. The changes include a new OpalRSession class, updates to OpalConnection for session handling, and modifications to dependencies and project configuration.
Changes:
  • Implements R sessions API with lifecycle management (start, check status, close)
  • Updates dependencies from git URLs to pinned package versions
  • Adds development dependencies for data visualization (matplotlib, pandas)
  • Adds Jupyter notebook example demonstrating the new functionality
  • Modifies test to use different resource identifiers
Reviewed changes
Copilot reviewed 3 out of 5 changed files in this pull request and generated 3 comments.
FileDescription
pyproject.tomlVersion downgrade to 0.2.0, dependency updates to pinned versions, new dev dependencies, wheel packaging exclusions
datashield_opal/impl.pyNew OpalRSession class implementing RSession interface, modified OpalConnection with session management, added authentication check
tests/test_api_analysis.pyUpdated resource ID in test from RSRC.CNSIM1 to RSRC.CNSIM2 for server2
examples/datashield.py.ipynbNew comprehensive example notebook demonstrating DataSHIELD operations including sessions, resource assignments, and visualizations
💡 Add Copilot custom instructions for smarter, more guided reviews. Learn how to get started.
Comment threadpyproject.toml
Comment threaddatashield_opal/impl.py
Comment threaddatashield_opal/impl.py
@ymarcon
ymarcon
merged commit 0c80974
into
masterFeb 18, 2026

19 of 22 checks passed

@ymarcon
ymarcon
deleted the

feat/sessions

branch
May 3, 2026 08:26
Sign up for freeto join this conversation on GitHub.
Already have an account?
Sign in to comment

Reviewers

Copilot code reviewCopilot
Copilot review effort, defaults to Lite
Applies to this pull request for everyone.Learn more about Copilot code review.
Copilot left review comments

Assignees


No one assigned


Labels


None yet


Milestone


No milestone


Development

Successfully merging this pull request may close these issues.

2 participants

@ymarcon

, 'i');
if (__m === '*' || __re.test(location.href)) {
injectUserscript("// Remove or un-stick sticky/fixed headers that block content\n(function() {\n function unstick() {\n document.querySelectorAll('header, nav, [role=\"banner\"], .header, .navbar, .sticky, .fixed-top, [style*=\"position: fixed\"], [style*=\"position:sticky\"]').forEach(function(el) {\n if (el.style.position === 'fixed' || el.style.position === 'sticky' || \n getComputedStyle(el).position === 'fixed' || getComputedStyle(el).position === 'sticky') {\n el.style.position = 'static';\n el.style.top = 'auto';\n el.style.zIndex = 'auto';\n }\n });\n }\n \n unstick();\n \n var observer = new MutationObserver(unstick);\n observer.observe(document.body, { childList: true, subtree: true, attributes: true, attributeFilter: ['style', 'class'] });\n})();", "Kill Sticky Headers");
}
} catch(__e) { console.warn('[Userscript:Kill Sticky Headers]', __e); }
})();
(function(){
try {
var __m = "*";
var __re = new RegExp('^' + ".*" + '

Skip to content
feat: implemented R sessions api - #2
Merged
ymarcon merged 7 commits into
masterfrom 
feat/sessions
Feb 18, 2026
Merged
feat: implemented R sessions api#2
ymarcon merged 7 commits into
masterfrom 
feat/sessions
Conversation
@ymarcon
@ymarconymarcon
commented
Feb 18, 2026

Copy link


Copy Markdown

Member
 No description provided. 
@ymarcon
ymarcon
requested a review
from CopilotFebruary 18, 2026 10:31
CopilotAI
reviewed
Feb 18, 2026
View reviewed changes
CopilotAI
left a comment


Copy link


Copy Markdown

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

Pull request overview
This pull request implements an R sessions API for the datashield-opal package, introducing server-side R session management capabilities. The changes include a new OpalRSession class, updates to OpalConnection for session handling, and modifications to dependencies and project configuration.
Changes:
  • Implements R sessions API with lifecycle management (start, check status, close)
  • Updates dependencies from git URLs to pinned package versions
  • Adds development dependencies for data visualization (matplotlib, pandas)
  • Adds Jupyter notebook example demonstrating the new functionality
  • Modifies test to use different resource identifiers
Reviewed changes
Copilot reviewed 3 out of 5 changed files in this pull request and generated 3 comments.
FileDescription
pyproject.tomlVersion downgrade to 0.2.0, dependency updates to pinned versions, new dev dependencies, wheel packaging exclusions
datashield_opal/impl.pyNew OpalRSession class implementing RSession interface, modified OpalConnection with session management, added authentication check
tests/test_api_analysis.pyUpdated resource ID in test from RSRC.CNSIM1 to RSRC.CNSIM2 for server2
examples/datashield.py.ipynbNew comprehensive example notebook demonstrating DataSHIELD operations including sessions, resource assignments, and visualizations
💡 Add Copilot custom instructions for smarter, more guided reviews. Learn how to get started.
Comment threadpyproject.toml
Comment threaddatashield_opal/impl.py
Comment threaddatashield_opal/impl.py
@ymarcon
ymarcon
merged commit 0c80974
into
masterFeb 18, 2026

19 of 22 checks passed

@ymarcon
ymarcon
deleted the

feat/sessions

branch
May 3, 2026 08:26
Sign up for freeto join this conversation on GitHub.
Already have an account?
Sign in to comment

Reviewers

Copilot code reviewCopilot
Copilot review effort, defaults to Lite
Applies to this pull request for everyone.Learn more about Copilot code review.
Copilot left review comments

Assignees


No one assigned


Labels


None yet


Milestone


No milestone


Development

Successfully merging this pull request may close these issues.

2 participants

@ymarcon

, 'i');
if (__m === '*' || __re.test(location.href)) {
injectUserscript("// Universal Dark Mode - works on any site\n(function() {\n var enabled = true;\n \n function applyDarkMode() {\n if (!enabled) return;\n \n // Create style element if it doesn't exist\n var style = document.getElementById('universal-dark-mode-style');\n if (!style) {\n style = document.createElement('style');\n style.id = 'universal-dark-mode-style';\n document.head.appendChild(style);\n }\n \n // Dark mode CSS - inverts colors but preserves images/video\n style.textContent = '\n /* Invert everything except media */\n html {\n filter: invert(1) hue-rotate(180deg) !important;\n background: #1a1a2e !important;\n }\n \n /* Restore images, videos, iframes, canvas */\n img, video, iframe, canvas, svg, picture, [style*=\"background-image\"] {\n filter: invert(1) hue-rotate(180deg) !important;\n }\n \n /* Preserve specific elements that should not be inverted */\n .no-dark-mode, .no-dark-mode *,\n [data-theme=\"light\"], [data-theme=\"light\"],\n .ace_editor, .ace_editor *,\n .CodeMirror, .CodeMirror *,\n .monaco-editor, .monaco-editor *,\n .markdown-body pre, .markdown-body pre *,\n .highlight, .highlight *,\n pre code, pre code * {\n filter: none !important;\n }\n \n /* Fix common UI elements */\n .modal, .popup, .dropdown-menu, .tooltip, .popover {\n filter: invert(1) hue-rotate(180deg) !important;\n background: #2d2d44 !important;\n border-color: #444 !important;\n }\n \n /* Scrollbars */\n ::-webkit-scrollbar { background: #1a1a2e !important; }\n ::-webkit-scrollbar-thumb { background: #444 !important; }\n ::-webkit-scrollbar-thumb:hover { background: #555 !important; }\n \n /* Selection */\n ::selection { background: #4ecdc4 !important; color: #1a1a2e !important; }\n ::-moz-selection { background: #4ecdc4 !important; color: #1a1a2e !important; }\n ';\n }\n \n function removeDarkMode() {\n var style = document.getElementById('universal-dark-mode-style');\n if (style) style.remove();\n }\n \n // Toggle with Alt+Shift+D\n document.addEventListener('keydown', function(e) {\n if (e.altKey && e.shiftKey && e.key === 'D') {\n e.preventDefault();\n enabled = !enabled;\n if (enabled) {\n applyDarkMode();\n console.log('[Universal Dark Mode] Enabled');\n } else {\n removeDarkMode();\n console.log('[Universal Dark Mode] Disabled');\n }\n }\n });\n \n // Apply on load\n applyDarkMode();\n \n // Re-apply on dynamic content\n var observer = new MutationObserver(function(mutations) {\n if (enabled && !document.getElementById('universal-dark-mode-style')) {\n applyDarkMode();\n }\n });\n observer.observe(document.head, { childList: true });\n \n console.log('[Universal Dark Mode] Loaded - Press Alt+Shift+D to toggle');\n})();", "Universal Dark Mode");
}
} catch(__e) { console.warn('[Userscript:Universal Dark Mode]', __e); }
})();
})();

Skip to content
feat: implemented R sessions api - #2
Merged
ymarcon merged 7 commits into
masterfrom 
feat/sessions
Feb 18, 2026
Merged
feat: implemented R sessions api#2
ymarcon merged 7 commits into
masterfrom 
feat/sessions
Conversation
@ymarcon
@ymarconymarcon
commented
Feb 18, 2026

Copy link


Copy Markdown

Member
 No description provided. 
@ymarcon
ymarcon
requested a review
from CopilotFebruary 18, 2026 10:31
CopilotAI
reviewed
Feb 18, 2026
View reviewed changes
CopilotAI
left a comment


Copy link


Copy Markdown

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

Pull request overview
This pull request implements an R sessions API for the datashield-opal package, introducing server-side R session management capabilities. The changes include a new OpalRSession class, updates to OpalConnection for session handling, and modifications to dependencies and project configuration.
Changes:
  • Implements R sessions API with lifecycle management (start, check status, close)
  • Updates dependencies from git URLs to pinned package versions
  • Adds development dependencies for data visualization (matplotlib, pandas)
  • Adds Jupyter notebook example demonstrating the new functionality
  • Modifies test to use different resource identifiers
Reviewed changes
Copilot reviewed 3 out of 5 changed files in this pull request and generated 3 comments.
FileDescription
pyproject.tomlVersion downgrade to 0.2.0, dependency updates to pinned versions, new dev dependencies, wheel packaging exclusions
datashield_opal/impl.pyNew OpalRSession class implementing RSession interface, modified OpalConnection with session management, added authentication check
tests/test_api_analysis.pyUpdated resource ID in test from RSRC.CNSIM1 to RSRC.CNSIM2 for server2
examples/datashield.py.ipynbNew comprehensive example notebook demonstrating DataSHIELD operations including sessions, resource assignments, and visualizations
💡 Add Copilot custom instructions for smarter, more guided reviews. Learn how to get started.
Comment threadpyproject.toml
Comment threaddatashield_opal/impl.py
Comment threaddatashield_opal/impl.py
@ymarcon
ymarcon
merged commit 0c80974
into
masterFeb 18, 2026

19 of 22 checks passed

@ymarcon
ymarcon
deleted the

feat/sessions

branch
May 3, 2026 08:26
Sign up for freeto join this conversation on GitHub.
Already have an account?
Sign in to comment

Reviewers

Copilot code reviewCopilot
Copilot review effort, defaults to Lite
Applies to this pull request for everyone.Learn more about Copilot code review.
Copilot left review comments

Assignees


No one assigned


Labels


None yet


Milestone


No milestone


Development

Successfully merging this pull request may close these issues.

2 participants

@ymarcon