Dekker Lab

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1. cworld-dekker cworld-dekkerPublic

   perl cworld module and collection of utility/analysis scripts for C data (3C, 4C, 5C, Hi-C)

   Perl 68 20

2. crane-nature-2015 crane-nature-2015Public

   code associated with crane-nature-2015, 10.1038/nature14450

   Perl 38 8

3. matrix_paper matrix_paperPublic

   Scripts and notebooks used in Akgol Oksuz et al. paper

   Jupyter Notebook 11 1

4. cooltools cooltoolsPublic

   Forked from open2c/cooltools

   The tools for your .cool's

   Python 4 2

5. Zagelbaum_etal_NSMB_2022 Zagelbaum_etal_NSMB_2022Public

   Notebooks for Hi-C analyses related to "Multiscale reorganization of the genome following DNA damage facilitates chromosome translocations via nuclear actin polymerization".

   Jupyter Notebook 4

6. unionloops-nf unionloops-nfPublic

   A HiCCUPS-based pipeline for simultaneous chromatin loop calling and cross-sample comparison, where both steps reinforce each other.

   Python 4 2