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dhanyashri-g/README.md

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🧰 Technical & Soft Skills

🧪 Bioinformatics Skills

🧠 Health Informatics & Technical Skills

💼 Soft Skills


🧰 Software & Tools

🖥️ Bioinformatics Software & Tools

ADMETlab AlphaFold AutoDock BCFtools BLAST BindingDB BioAssay BioCyc BioPerl Biopython CASTp CTD CTDbase CellDesigner ChEMBL ChimeraX Clustal Omega Cytoscape DAVID DDBJ DESeq2 DGIdb DepMap DiGePred Discovery Studio Drug Gene Interaction Database DrugBank EMBL-EBI EMBOSS Enrichr Ensembl Ensembl Compara European Galaxy FDA FuncSimMat GATK GDC Data Portal GEMINI GENCODE GENIE3 GEO GEO2R GEOexplore GPCRdb GROMACS Galaxy GenBank GenePattern GtoPdb HADDOCK Human Protein Atlas ICGC IEDB Analysis Resource IFNepitope InterPro Jmol KASS KEGG KEGG Mapper KMplot MATLAB MODELLER Metascape MyCancerGenome NCBI Needle OCHEM ORCS OncoKB OrthoFinder PBIT PDB PPA-Pred PRISM PatchDock PathVisio Pfam PharmGKB PockDrug ProTox-II PrognoScan PubChem PubMed PyMol PyRx REDCap Rasmol Reactome SEA SMACC STRING Samtools SeqBuilder Pro Swiss-Model SwissADME SwissDock SwissProt SwissTargetPrediction ToppGene ToxCast Toxtree TrEMBL UCSC Genome Browser UniProt VMD VaxiJen Virulent ZDOCK ZINC15

🖥️ Other Software & Tools

Tableau Power BI Microsoft Office Excel PowerPoint Microsoft Teams Google Workspace Airtable Canva Adobe BioRender SPSS Statistics Pivot Tables AI Tools


💻 Programming Languages

Beginner Python C++ SQL HTML Perl Java


📄 Publications

🧪 Comprehensive Insights into Monkeypox (mpox): Recent Advances in Epidemiology, Diagnostic Approaches and Therapeutic Strategies

Summary: A comprehensive review of Monkeypox (mpox) covering recent breakthroughs in epidemiology, diagnostic strategies, and emerging therapeutics. This work contributes to better preparedness and global surveillance.

MDPI Q1 Year📎 DOI: 10.3390/pathogens14010001 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━

🧬 Long COVID: G Protein-Coupled Receptors (GPCRs) Associated Genes and Pathways as a Promising Therapeutic Potential Through Computational Analysis

Summary: Explores the involvement of GPCRs in Long COVID pathophysiology using in silico transcriptomic and pathway enrichment analyses. Highlights new therapeutic angles and drug repositioning opportunities.

Preprint Final Year Project Year 📎 DOI: 10.20944/preprints202408.0558.v1 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━

🤖 Deep Learning in Computational Biology: Advancements, Challenges, and Future Outlook

Summary: A visionary overview of how deep learning is revolutionizing computational biology — from structure prediction and functional annotation to drug discovery. Tackles the real-world challenges and future research horizons.

arXiv Q1 Year 📎 DOI: 10.48550/arXiv.2310.03086


🧬 Academic Research Projects

🔬 Monkeypox Protein Structure 💉 Vaccine Design (Monkeypox) 🧪 Rheumatoid Arthritis Analysis
Tools: UniProt, PubChem, IGEMDOCK
Focus: 🧬 Molecular Docking
Docking
View Repo
Tools: Uniprot, VaxiJen, B/T-cell, Ifnepitope, PatchDock
Focus: 💉 Epitope-Based Vaccine
Vaccine
View Repo
Tools: GEO2R, Functional Enrichment, PPI Network, Cytoscape
Focus: 🔍 Hub Gene Detection
RA
View Repo
🧠 Pathology System Design 🦠 Novel Drug Target – H. pylori 💊 COVID-19 Drug Analysis
⚙️ Informatics system design
Focus: 💾 Data Architecture
System
View Repo
Tools: European Galaxy, KEGG, PSORTb, PBIT, KASS
Focus: Antimicrobial Resistance Bacteria H. pylori
AMR
View Repo
Tools: SMACC, Digep-Pred, CTD, SwissADME, Enrichr, Cytoscape
Focus: 🔬 Systems biology + cheminformatics
COVID
View Repo

🏆 Achievements

Achievement Certificate
🥇 Best Poster Presenter
📍 INCOBIOM 2024
🏅 Best Poster Award
💡 Presented award-winning research in computational biology and precision medicine.
Certificate 1
🎓 Dean’s List Award
🏫 University Academic Excellence
📅 2022, 2023, 2024
🏅 Maintained consistent academic excellence across 3 years.
Certificate 2

🧬 Scientific Participation

🌐 INCOBIOM 2024
International Conference on Computational Biology & Precision Medicine
📅 2024
🧬 Participated in bioinformatics & precision medicine.
🧪 iMPaCHS 2024
Medical, Pharmaceutical, Cosmeceutical & Health Symposium
📅 2024
💊 Focused on pharma, health, cosmeceuticals.
🌱 Biotech & EnviroConf 2023
Biotech, Chemical & Environmental Sciences
📅 2023
🌿 Focused on sustainability & biotech innovation.

🧪 Professional Development

🔬 Whole Genome Sequencing & AMR Profiling
Instructor
Skills AMR Pathogen
Type
🦠 Microbial Pathogen Database & Resources
Instructor
Skills Tools Resources
Type
🧬 NGS Microbial Data Analysis
Event
Skills Data Genomics
Type

🌐 Languages

🏴 English 🇲🇾 Bahasa Melayu 🇮🇳 Tamil
🟢 Fluent
Professional Fluency in Speaking & Writing
🟢 Fluent
Professional Fluency in Speaking & Writing
🟢 Fluent (Native)
Professional Fluency in Speaking

💌 Let's Connect!

Let’s connect, collaborate, or just geek out over some genes!

LinkedIn ORCID Email

💡"Science + Data + a Smile = Endless Possibilities."💡

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  1. long-covid-therapeutics long-covid-therapeutics Public

    A project exploring G-protein-coupled receptors (GPCRs) as therapeutic targets for Long COVID using computational analysis and drug repurposing tools.

    1

  2. variant-analysis-pipeline variant-analysis-pipeline Public

    Variant analysis pipeline using Python - demo

    Python 1

  3. tcga-rnaseq-analysis tcga-rnaseq-analysis Public

    A workflow for NGS analysis on RNA-seq samples

    Python 1

  4. sars-cov2-dashboard sars-cov2-dashboard Public

    A Streamlit dashboard to explore SARS-CoV-2 genomic data

    Python