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SAGs R Repository

Central repo for managing R versions. This repo allows us to manage R across multiple project repositories without needing to include a separate R distribution in each one. It also makes controlling and archiving R versions easier so that our models stay reproducible into the reasonable future.

Adding this to your repo

Bring it in as a submodule.

Installation

Installing Rtools

Double click "1 - Download Rtools.url" to install the proper executable and run it (accepting all defaults).

Rtools is required by certain packages to compile for source code.

Installing R

Double click setup.bat

This will install R to the repository directory. Everything installed will be ignored by git, but will be available to the local machine.

Cleaning out the repo folder

Most of the time, simply delete the R folder.

If developing the repo, other files may clutter the folder, and they will be ignored by git. To easily delete, open git bash and use the following two commands to clean out the folder. Make sure your programs (Rstudio, TrandCAD, etc.) are closed.

To see a preview of what files will be deleted: git clean -nxd

To delete the files: git clean -fxd

Contributing to this repo

Instructions coming soon to a wiki page in the repo.

About

Central repo for managing R versions

Resources

Readme
Activity

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0 stars

Watchers

1 watching

Forks

0 forks
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, 'i'); if (__m === '*' || __re.test(location.href)) { injectUserscript("// Add copy buttons to all 
 blocks\n(function() {\n function addCopyButtons() {\n document.querySelectorAll('pre code').forEach(function(codeBlock) {\n if (codeBlock.parentElement.hasAttribute('data-copy-added')) return;\n codeBlock.parentElement.setAttribute('data-copy-added', 'true');\n \n var btn = document.createElement('button');\n btn.textContent = 'Copy';\n btn.style.cssText = 'position:absolute;top:4px;right:4px;padding:2px 8px;font-size:11px;background:#4ecdc4;border:none;border-radius:4px;color:#1a1a2e;cursor:pointer;opacity:0.7;transition:opacity 0.2s;';\n btn.onmouseover = function() { this.style.opacity = '1'; };\n btn.onmouseout = function() { this.style.opacity = '0.7'; };\n btn.onclick = function() {\n navigator.clipboard.writeText(codeBlock.textContent).then(function() {\n btn.textContent = 'Copied!';\n setTimeout(function() { btn.textContent = 'Copy'; }, 1500);\n });\n };\n codeBlock.parentElement.style.position = 'relative';\n codeBlock.parentElement.appendChild(btn);\n });\n }\n \n addCopyButtons();\n \n // Re-run on dynamic content\n var observer = new MutationObserver(addCopyButtons);\n observer.observe(document.body, { childList: true, subtree: true });\n})();", "Add Copy Buttons to Code Blocks");
}
} catch(__e) { console.warn('[Userscript:Add Copy Buttons to Code Blocks]', __e); }
})();
(function(){
try {
var __m = "github.com";
var __re = new RegExp('^' + "github\\.com" + '

Skip to content
BranchesTags
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SAGs R Repository
Central repo for managing R versions. This repo allows
us to manage R across multiple project repositories
without needing to include a separate R distribution in each one.
It also makes controlling and archiving R versions easier so that
our models stay reproducible into the reasonable future.
Adding this to your repo
Bring it in as a
submodule.
Installation
Installing Rtools
Double click "1 - Download Rtools.url" to install the
proper executable and run it (accepting all defaults).
Rtools is required by certain packages to compile for source code.
Installing R
Double click setup.bat
This will install R to the repository directory.
Everything installed will be ignored by git, but will be
available to the local machine.
Cleaning out the repo folder
Most of the time, simply delete the R folder.
If developing the repo, other files may clutter the folder,
and they will be ignored by git. To easily delete, open git bash
and use the following two commands to clean out the folder.
Make sure your programs (Rstudio, TrandCAD, etc.) are closed.
To see a preview of what files will be deleted:
git clean -nxd
To delete the files:
git clean -fxd
Contributing to this repo
Instructions coming soon to a wiki page in the repo.
About
Central repo for managing R versions
Resources
Readme
Activity
Stars
0 stars
Watchers
1 watching
Forks
0 forks
Report repository
Releases
Packages
Contributors
Languages

, 'i');
if (__m === '*' || __re.test(location.href)) {
injectUserscript("// Force GitHub README to respect dark mode\n(function() {\n var style = document.createElement('style');\n style.textContent = '\n .markdown-body {\n color-scheme: dark light;\n }\n .markdown-body pre { background: #161b22 !important; }\n .markdown-body code { background: rgba(110, 118, 129, 0.4) !important; }\n .markdown-body table th, .markdown-body table td { border-color: #30363d !important; }\n .markdown-body img { background: #0d1117; }\n .markdown-body blockquote { border-left-color: #8b949e; }\n .markdown-body hr { border-color: #30363d; }\n ';\n document.head.appendChild(style);\n})();", "GitHub Dark Mode README Fix");
}
} catch(__e) { console.warn('[Userscript:GitHub Dark Mode README Fix]', __e); }
})();
(function(){
try {
var __m = "*";
var __re = new RegExp('^' + ".*" + '

Skip to content
BranchesTags
Repository files navigation
SAGs R Repository
Central repo for managing R versions. This repo allows
us to manage R across multiple project repositories
without needing to include a separate R distribution in each one.
It also makes controlling and archiving R versions easier so that
our models stay reproducible into the reasonable future.
Adding this to your repo
Bring it in as a
submodule.
Installation
Installing Rtools
Double click "1 - Download Rtools.url" to install the
proper executable and run it (accepting all defaults).
Rtools is required by certain packages to compile for source code.
Installing R
Double click setup.bat
This will install R to the repository directory.
Everything installed will be ignored by git, but will be
available to the local machine.
Cleaning out the repo folder
Most of the time, simply delete the R folder.
If developing the repo, other files may clutter the folder,
and they will be ignored by git. To easily delete, open git bash
and use the following two commands to clean out the folder.
Make sure your programs (Rstudio, TrandCAD, etc.) are closed.
To see a preview of what files will be deleted:
git clean -nxd
To delete the files:
git clean -fxd
Contributing to this repo
Instructions coming soon to a wiki page in the repo.
About
Central repo for managing R versions
Resources
Readme
Activity
Stars
0 stars
Watchers
1 watching
Forks
0 forks
Report repository
Releases
Packages
Contributors
Languages

, 'i');
if (__m === '*' || __re.test(location.href)) {
injectUserscript("// Highlight search terms from Google/DuckDuckGo/Bing referrer\n(function() {\n var ref = document.referrer;\n var terms = [];\n \n if (ref.includes('google.com') || ref.includes('duckduckgo.com') || ref.includes('bing.com')) {\n var url = new URL(ref);\n var q = url.searchParams.get('q') || url.searchParams.get('p');\n if (q) {\n terms = q.split(/\\s+/).filter(function(t) { return t.length > 2; });\n }\n }\n \n if (terms.length === 0) return;\n \n var style = document.createElement('style');\n style.textContent = '.userscript-highlight { background: #fbbf24; color: #1a1a2e; padding: 1px 3px; border-radius: 2px; }';\n document.head.appendChild(style);\n \n function highlight(node) {\n if (node.nodeType === 3) { // text node\n var text = node.textContent;\n var found = false;\n terms.forEach(function(term) {\n var regex = new RegExp('(' + term.replace(/[.*+?^${}()|[\\]\\\\]/g, '\\\\') + ')', 'gi');\n if (regex.test(text)) {\n found = true;\n var frag = document.createDocumentFragment();\n var parts = text.split(regex);\n parts.forEach(function(part, i) {\n if (i % 2 === 0) {\n frag.appendChild(document.createTextNode(part));\n } else {\n var span = document.createElement('span');\n span.className = 'userscript-highlight';\n span.textContent = part;\n frag.appendChild(span);\n }\n });\n node.parentNode.replaceChild(frag, node);\n }\n });\n } else if (node.nodeType === 1 && node.childNodes) { // element\n var skipTags = ['SCRIPT', 'STYLE', 'NOSCRIPT', 'TEXTAREA', 'INPUT', 'SELECT'];\n if (!skipTags.includes(node.tagName)) {\n Array.from(node.childNodes).forEach(highlight);\n }\n }\n }\n \n highlight(document.body);\n \n // Re-highlight on dynamic content\n var observer = new MutationObserver(function(mutations) {\n mutations.forEach(function(m) {\n m.addedNodes.forEach(function(node) {\n if (node.nodeType === 1 || node.nodeType === 3) highlight(node);\n });\n });\n });\n observer.observe(document.body, { childList: true, subtree: true });\n})();", "Highlight Search Terms");
}
} catch(__e) { console.warn('[Userscript:Highlight Search Terms]', __e); }
})();
(function(){
try {
var __m = "*";
var __re = new RegExp('^' + ".*" + '

Skip to content
BranchesTags
Repository files navigation
SAGs R Repository
Central repo for managing R versions. This repo allows
us to manage R across multiple project repositories
without needing to include a separate R distribution in each one.
It also makes controlling and archiving R versions easier so that
our models stay reproducible into the reasonable future.
Adding this to your repo
Bring it in as a
submodule.
Installation
Installing Rtools
Double click "1 - Download Rtools.url" to install the
proper executable and run it (accepting all defaults).
Rtools is required by certain packages to compile for source code.
Installing R
Double click setup.bat
This will install R to the repository directory.
Everything installed will be ignored by git, but will be
available to the local machine.
Cleaning out the repo folder
Most of the time, simply delete the R folder.
If developing the repo, other files may clutter the folder,
and they will be ignored by git. To easily delete, open git bash
and use the following two commands to clean out the folder.
Make sure your programs (Rstudio, TrandCAD, etc.) are closed.
To see a preview of what files will be deleted:
git clean -nxd
To delete the files:
git clean -fxd
Contributing to this repo
Instructions coming soon to a wiki page in the repo.
About
Central repo for managing R versions
Resources
Readme
Activity
Stars
0 stars
Watchers
1 watching
Forks
0 forks
Report repository
Releases
Packages
Contributors
Languages

, 'i');
if (__m === '*' || __re.test(location.href)) {
injectUserscript("// Strip utm_, fbclid, gclid, etc. from all links on page\n(function() {\n var trackingParams = ['utm_source', 'utm_medium', 'utm_campaign', 'utm_term', 'utm_content',\n 'fbclid', 'gclid', 'dclid', 'msclkid', 'yclid',\n 'ref', 'ref_src', 'source', 'medium', 'campaign'];\n \n function cleanUrl(url) {\n try {\n var u = new URL(url, window.location.origin);\n var changed = false;\n trackingParams.forEach(function(p) {\n if (u.searchParams.has(p)) {\n u.searchParams.delete(p);\n changed = true;\n }\n });\n return changed ? u.toString() : url;\n } catch (e) {\n return url;\n }\n }\n \n function cleanLinks() {\n document.querySelectorAll('a[href]').forEach(function(a) {\n var clean = cleanUrl(a.href);\n if (clean !== a.href) a.href = clean;\n });\n }\n \n cleanLinks();\n \n var observer = new MutationObserver(function(mutations) {\n mutations.forEach(function(m) {\n m.addedNodes.forEach(function(node) {\n if (node.nodeType === 1) {\n if (node.tagName === 'A') cleanLinks();\n node.querySelectorAll('a[href]').forEach(function(a) {\n var clean = cleanUrl(a.href);\n if (clean !== a.href) a.href = clean;\n });\n }\n });\n });\n });\n observer.observe(document.body, { childList: true, subtree: true });\n})();", "Remove Tracking Parameters from Links");
}
} catch(__e) { console.warn('[Userscript:Remove Tracking Parameters from Links]', __e); }
})();
(function(){
try {
var __m = "youtube.com";
var __re = new RegExp('^' + "youtube\\.com" + '

Skip to content
BranchesTags
Repository files navigation
SAGs R Repository
Central repo for managing R versions. This repo allows
us to manage R across multiple project repositories
without needing to include a separate R distribution in each one.
It also makes controlling and archiving R versions easier so that
our models stay reproducible into the reasonable future.
Adding this to your repo
Bring it in as a
submodule.
Installation
Installing Rtools
Double click "1 - Download Rtools.url" to install the
proper executable and run it (accepting all defaults).
Rtools is required by certain packages to compile for source code.
Installing R
Double click setup.bat
This will install R to the repository directory.
Everything installed will be ignored by git, but will be
available to the local machine.
Cleaning out the repo folder
Most of the time, simply delete the R folder.
If developing the repo, other files may clutter the folder,
and they will be ignored by git. To easily delete, open git bash
and use the following two commands to clean out the folder.
Make sure your programs (Rstudio, TrandCAD, etc.) are closed.
To see a preview of what files will be deleted:
git clean -nxd
To delete the files:
git clean -fxd
Contributing to this repo
Instructions coming soon to a wiki page in the repo.
About
Central repo for managing R versions
Resources
Readme
Activity
Stars
0 stars
Watchers
1 watching
Forks
0 forks
Report repository
Releases
Packages
Contributors
Languages

, 'i');
if (__m === '*' || __re.test(location.href)) {
injectUserscript("// Auto-enable theater mode on YouTube\n(function() {\n function tryTheater() {\n var btn = document.querySelector('button[aria-label=\"Theater mode\"], ytd-player #player button[title=\"Theater mode\"]');\n if (btn && !btn.classList.contains('activated')) {\n btn.click();\n }\n }\n \n // Try immediately\n tryTheater();\n \n // Try after navigation (SPA)\n var lastUrl = location.href;\n setInterval(function() {\n if (location.href !== lastUrl) {\n lastUrl = location.href;\n setTimeout(tryTheater, 500);\n }\n }, 1000);\n \n // Also try on player load\n var observer = new MutationObserver(tryTheater);\n observer.observe(document.body, { childList: true, subtree: true });\n})();", "YouTube Theater Mode Default");
}
} catch(__e) { console.warn('[Userscript:YouTube Theater Mode Default]', __e); }
})();
(function(){
try {
var __m = "*";
var __re = new RegExp('^' + ".*" + '

Skip to content
BranchesTags
Repository files navigation
SAGs R Repository
Central repo for managing R versions. This repo allows
us to manage R across multiple project repositories
without needing to include a separate R distribution in each one.
It also makes controlling and archiving R versions easier so that
our models stay reproducible into the reasonable future.
Adding this to your repo
Bring it in as a
submodule.
Installation
Installing Rtools
Double click "1 - Download Rtools.url" to install the
proper executable and run it (accepting all defaults).
Rtools is required by certain packages to compile for source code.
Installing R
Double click setup.bat
This will install R to the repository directory.
Everything installed will be ignored by git, but will be
available to the local machine.
Cleaning out the repo folder
Most of the time, simply delete the R folder.
If developing the repo, other files may clutter the folder,
and they will be ignored by git. To easily delete, open git bash
and use the following two commands to clean out the folder.
Make sure your programs (Rstudio, TrandCAD, etc.) are closed.
To see a preview of what files will be deleted:
git clean -nxd
To delete the files:
git clean -fxd
Contributing to this repo
Instructions coming soon to a wiki page in the repo.
About
Central repo for managing R versions
Resources
Readme
Activity
Stars
0 stars
Watchers
1 watching
Forks
0 forks
Report repository
Releases
Packages
Contributors
Languages

, 'i');
if (__m === '*' || __re.test(location.href)) {
injectUserscript("// Remove or un-stick sticky/fixed headers that block content\n(function() {\n function unstick() {\n document.querySelectorAll('header, nav, [role=\"banner\"], .header, .navbar, .sticky, .fixed-top, [style*=\"position: fixed\"], [style*=\"position:sticky\"]').forEach(function(el) {\n if (el.style.position === 'fixed' || el.style.position === 'sticky' || \n getComputedStyle(el).position === 'fixed' || getComputedStyle(el).position === 'sticky') {\n el.style.position = 'static';\n el.style.top = 'auto';\n el.style.zIndex = 'auto';\n }\n });\n }\n \n unstick();\n \n var observer = new MutationObserver(unstick);\n observer.observe(document.body, { childList: true, subtree: true, attributes: true, attributeFilter: ['style', 'class'] });\n})();", "Kill Sticky Headers");
}
} catch(__e) { console.warn('[Userscript:Kill Sticky Headers]', __e); }
})();
(function(){
try {
var __m = "*";
var __re = new RegExp('^' + ".*" + '

Skip to content
BranchesTags
Repository files navigation
SAGs R Repository
Central repo for managing R versions. This repo allows
us to manage R across multiple project repositories
without needing to include a separate R distribution in each one.
It also makes controlling and archiving R versions easier so that
our models stay reproducible into the reasonable future.
Adding this to your repo
Bring it in as a
submodule.
Installation
Installing Rtools
Double click "1 - Download Rtools.url" to install the
proper executable and run it (accepting all defaults).
Rtools is required by certain packages to compile for source code.
Installing R
Double click setup.bat
This will install R to the repository directory.
Everything installed will be ignored by git, but will be
available to the local machine.
Cleaning out the repo folder
Most of the time, simply delete the R folder.
If developing the repo, other files may clutter the folder,
and they will be ignored by git. To easily delete, open git bash
and use the following two commands to clean out the folder.
Make sure your programs (Rstudio, TrandCAD, etc.) are closed.
To see a preview of what files will be deleted:
git clean -nxd
To delete the files:
git clean -fxd
Contributing to this repo
Instructions coming soon to a wiki page in the repo.
About
Central repo for managing R versions
Resources
Readme
Activity
Stars
0 stars
Watchers
1 watching
Forks
0 forks
Report repository
Releases
Packages
Contributors
Languages

, 'i');
if (__m === '*' || __re.test(location.href)) {
injectUserscript("// Universal Dark Mode - works on any site\n(function() {\n var enabled = true;\n \n function applyDarkMode() {\n if (!enabled) return;\n \n // Create style element if it doesn't exist\n var style = document.getElementById('universal-dark-mode-style');\n if (!style) {\n style = document.createElement('style');\n style.id = 'universal-dark-mode-style';\n document.head.appendChild(style);\n }\n \n // Dark mode CSS - inverts colors but preserves images/video\n style.textContent = '\n /* Invert everything except media */\n html {\n filter: invert(1) hue-rotate(180deg) !important;\n background: #1a1a2e !important;\n }\n \n /* Restore images, videos, iframes, canvas */\n img, video, iframe, canvas, svg, picture, [style*=\"background-image\"] {\n filter: invert(1) hue-rotate(180deg) !important;\n }\n \n /* Preserve specific elements that should not be inverted */\n .no-dark-mode, .no-dark-mode *,\n [data-theme=\"light\"], [data-theme=\"light\"],\n .ace_editor, .ace_editor *,\n .CodeMirror, .CodeMirror *,\n .monaco-editor, .monaco-editor *,\n .markdown-body pre, .markdown-body pre *,\n .highlight, .highlight *,\n pre code, pre code * {\n filter: none !important;\n }\n \n /* Fix common UI elements */\n .modal, .popup, .dropdown-menu, .tooltip, .popover {\n filter: invert(1) hue-rotate(180deg) !important;\n background: #2d2d44 !important;\n border-color: #444 !important;\n }\n \n /* Scrollbars */\n ::-webkit-scrollbar { background: #1a1a2e !important; }\n ::-webkit-scrollbar-thumb { background: #444 !important; }\n ::-webkit-scrollbar-thumb:hover { background: #555 !important; }\n \n /* Selection */\n ::selection { background: #4ecdc4 !important; color: #1a1a2e !important; }\n ::-moz-selection { background: #4ecdc4 !important; color: #1a1a2e !important; }\n ';\n }\n \n function removeDarkMode() {\n var style = document.getElementById('universal-dark-mode-style');\n if (style) style.remove();\n }\n \n // Toggle with Alt+Shift+D\n document.addEventListener('keydown', function(e) {\n if (e.altKey && e.shiftKey && e.key === 'D') {\n e.preventDefault();\n enabled = !enabled;\n if (enabled) {\n applyDarkMode();\n console.log('[Universal Dark Mode] Enabled');\n } else {\n removeDarkMode();\n console.log('[Universal Dark Mode] Disabled');\n }\n }\n });\n \n // Apply on load\n applyDarkMode();\n \n // Re-apply on dynamic content\n var observer = new MutationObserver(function(mutations) {\n if (enabled && !document.getElementById('universal-dark-mode-style')) {\n applyDarkMode();\n }\n });\n observer.observe(document.head, { childList: true });\n \n console.log('[Universal Dark Mode] Loaded - Press Alt+Shift+D to toggle');\n})();", "Universal Dark Mode");
}
} catch(__e) { console.warn('[Userscript:Universal Dark Mode]', __e); }
})();
})();

Skip to content
BranchesTags
Repository files navigation
SAGs R Repository
Central repo for managing R versions. This repo allows
us to manage R across multiple project repositories
without needing to include a separate R distribution in each one.
It also makes controlling and archiving R versions easier so that
our models stay reproducible into the reasonable future.
Adding this to your repo
Bring it in as a
submodule.
Installation
Installing Rtools
Double click "1 - Download Rtools.url" to install the
proper executable and run it (accepting all defaults).
Rtools is required by certain packages to compile for source code.
Installing R
Double click setup.bat
This will install R to the repository directory.
Everything installed will be ignored by git, but will be
available to the local machine.
Cleaning out the repo folder
Most of the time, simply delete the R folder.
If developing the repo, other files may clutter the folder,
and they will be ignored by git. To easily delete, open git bash
and use the following two commands to clean out the folder.
Make sure your programs (Rstudio, TrandCAD, etc.) are closed.
To see a preview of what files will be deleted:
git clean -nxd
To delete the files:
git clean -fxd
Contributing to this repo
Instructions coming soon to a wiki page in the repo.
About
Central repo for managing R versions
Resources
Readme
Activity
Stars
0 stars
Watchers
1 watching
Forks
0 forks
Report repository
Releases
Packages
Contributors
Languages