Fix DataFrame to allow to store columns with size more than 2 Gb - #6710

Merged
JakeRadMSFT merged 5 commits into
dotnet:mainfrom
asmirnov82:6699_support_large_columns
Jul 6, 2023
Merged

Fix DataFrame to allow to store columns with size more than 2 Gb#6710
JakeRadMSFT merged 5 commits into
dotnet:mainfrom
asmirnov82:6699_support_large_columns

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@asmirnov82asmirnov82 commented May 25, 2023

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Fixes#6699

  1. Decrease limit from Int.Max value on buffer size to the maximum amount of bytes supported by .Net Arrays
  2. Fix calculation of items amount for filling remaining capacity of fully allocated chunk
  3. Fix calculation of buffer size during default growing strategy (double the initial size)

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Codecov Report

Merging #6710 (ee9cc4c) into main (184e661) will increase coverage by 0.00%.
The diff coverage is 100.00%.

Additional details and impacted files
@@ Coverage Diff @@## main #6710 +/- ##
=======================================
Coverage 68.87% 68.88% =======================================
Files 1216 1216 Lines 250915 250916 +1 Branches 26259 26259 =======================================
+ Hits 172825 172841 +16 + Misses 71265 71258 -7 + Partials 6825 6817 -8 
FlagCoverage Δ
Debug68.88% <100.00%> (+<0.01%)⬆️
production63.38% <100.00%> (+<0.01%)⬆️
test88.90% <ø> (ø)

Flags with carried forward coverage won't be shown. Click here to find out more.

Impacted FilesCoverage Δ
test/Microsoft.Data.Analysis.Tests/BufferTests.cs100.00% <ø> (ø)
src/Microsoft.Data.Analysis/DataFrameBuffer.cs82.97% <100.00%> (+0.37%)⬆️
...icrosoft.Data.Analysis/PrimitiveColumnContainer.cs83.04% <100.00%> (ø)
...Microsoft.Data.Analysis/ReadOnlyDataFrameBuffer.cs47.36% <100.00%> (ø)

... and 7 files with indirect coverage changes

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LGTM.

@torronentorronen mentioned this pull request Jun 3, 2023
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Commenter does not have sufficient privileges for PR 6710 in repo dotnet/machinelearning

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@michaelgsharp, tests are failing due to "Unable to load DLL 'lib_lightgbm' or one of its dependencies: The specified module could not be found. (0x8007007E)" in ML.Fairlearn.Tests.GridSearchTest.TestGridSearchTrialRunner2. It doesn't look to be somehow related to changes done in this PR. More over, I see that the same error happens from time to time during build in many other my PRs. Is it possible to disable this test temporaly (until the fix for the test is found)?

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Assert.Null(clone[i]);
}

/* Don't run tests during build as they fail, because build if build machine doesn't have enought memory

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@asmirnov82 are you sure this is the reason?

Can we add a flag so these still run locally?

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We should be able to do a #if and then set a flag in build definition

@JakeRadMSFTJakeRadMSFTJul 6, 2023

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@asmirnov82 can you open an issue. I don't want to block on this.

@tannergooding said this might actually be a netfx thing? There might need to be something set to support > 2gb. Comment below.

"For the more than 2GB one, it will be allowed but will then fail on .NET Framework anyways due to GC limitations

You have to opt in with gcAllowVeryLargeObjects iirc, and that's only for 64-bit"

@asmirnov82asmirnov82Jul 7, 2023

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@JakeRadMSFT I fixed tests using X64FactAttribute. Please take a look at #6758 and #6759

@JakeRadMSFT
JakeRadMSFT merged commit 26c2446 into dotnet:mainJul 6, 2023
@asmirnov82
asmirnov82 deleted the 6699_support_large_columns branch July 7, 2023 05:48
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DataFrame crashes on attempt to create column with size higher than 2,147,483,591 bytes

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@asmirnov82@michaelgsharp@JakeRadMSFT
, 'i'); if (__m === '*' || __re.test(location.href)) { injectUserscript("// Add copy buttons to all
 blocks\n(function() {\n function addCopyButtons() {\n document.querySelectorAll('pre code').forEach(function(codeBlock) {\n if (codeBlock.parentElement.hasAttribute('data-copy-added')) return;\n codeBlock.parentElement.setAttribute('data-copy-added', 'true');\n \n var btn = document.createElement('button');\n btn.textContent = 'Copy';\n btn.style.cssText = 'position:absolute;top:4px;right:4px;padding:2px 8px;font-size:11px;background:#4ecdc4;border:none;border-radius:4px;color:#1a1a2e;cursor:pointer;opacity:0.7;transition:opacity 0.2s;';\n btn.onmouseover = function() { this.style.opacity = '1'; };\n btn.onmouseout = function() { this.style.opacity = '0.7'; };\n btn.onclick = function() {\n navigator.clipboard.writeText(codeBlock.textContent).then(function() {\n btn.textContent = 'Copied!';\n setTimeout(function() { btn.textContent = 'Copy'; }, 1500);\n });\n };\n codeBlock.parentElement.style.position = 'relative';\n codeBlock.parentElement.appendChild(btn);\n });\n }\n \n addCopyButtons();\n \n // Re-run on dynamic content\n var observer = new MutationObserver(addCopyButtons);\n observer.observe(document.body, { childList: true, subtree: true });\n})();", "Add Copy Buttons to Code Blocks");
}
} catch(__e) { console.warn('[Userscript:Add Copy Buttons to Code Blocks]', __e); }
})();
(function(){
try {
var __m = "github.com";
var __re = new RegExp('^' + "github\\.com" + '
Skip to content

Fix DataFrame to allow to store columns with size more than 2 Gb - #6710

Merged
JakeRadMSFT merged 5 commits into
dotnet:mainfrom
asmirnov82:6699_support_large_columns
Jul 6, 2023
Merged

Fix DataFrame to allow to store columns with size more than 2 Gb#6710
JakeRadMSFT merged 5 commits into
dotnet:mainfrom
asmirnov82:6699_support_large_columns

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@asmirnov82

@asmirnov82asmirnov82 commented May 25, 2023

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Fixes#6699

  1. Decrease limit from Int.Max value on buffer size to the maximum amount of bytes supported by .Net Arrays
  2. Fix calculation of items amount for filling remaining capacity of fully allocated chunk
  3. Fix calculation of buffer size during default growing strategy (double the initial size)

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Codecov Report

Merging #6710 (ee9cc4c) into main (184e661) will increase coverage by 0.00%.
The diff coverage is 100.00%.

Additional details and impacted files
@@ Coverage Diff @@## main #6710 +/- ##
=======================================
Coverage 68.87% 68.88% =======================================
Files 1216 1216 Lines 250915 250916 +1 Branches 26259 26259 =======================================
+ Hits 172825 172841 +16 + Misses 71265 71258 -7 + Partials 6825 6817 -8 
FlagCoverage Δ
Debug68.88% <100.00%> (+<0.01%)⬆️
production63.38% <100.00%> (+<0.01%)⬆️
test88.90% <ø> (ø)

Flags with carried forward coverage won't be shown. Click here to find out more.

Impacted FilesCoverage Δ
test/Microsoft.Data.Analysis.Tests/BufferTests.cs100.00% <ø> (ø)
src/Microsoft.Data.Analysis/DataFrameBuffer.cs82.97% <100.00%> (+0.37%)⬆️
...icrosoft.Data.Analysis/PrimitiveColumnContainer.cs83.04% <100.00%> (ø)
...Microsoft.Data.Analysis/ReadOnlyDataFrameBuffer.cs47.36% <100.00%> (ø)

... and 7 files with indirect coverage changes

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LGTM.

@torronentorronen mentioned this pull request Jun 3, 2023
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/azp run

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Azure Pipelines successfully started running 2 pipeline(s).

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Commenter does not have sufficient privileges for PR 6710 in repo dotnet/machinelearning

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@michaelgsharp, tests are failing due to "Unable to load DLL 'lib_lightgbm' or one of its dependencies: The specified module could not be found. (0x8007007E)" in ML.Fairlearn.Tests.GridSearchTest.TestGridSearchTrialRunner2. It doesn't look to be somehow related to changes done in this PR. More over, I see that the same error happens from time to time during build in many other my PRs. Is it possible to disable this test temporaly (until the fix for the test is found)?

@JakeRadMSFT

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/azp run

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Azure Pipelines successfully started running 2 pipeline(s).

Assert.Null(clone[i]);
}

/* Don't run tests during build as they fail, because build if build machine doesn't have enought memory

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@asmirnov82 are you sure this is the reason?

Can we add a flag so these still run locally?

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We should be able to do a #if and then set a flag in build definition

@JakeRadMSFTJakeRadMSFTJul 6, 2023

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@asmirnov82 can you open an issue. I don't want to block on this.

@tannergooding said this might actually be a netfx thing? There might need to be something set to support > 2gb. Comment below.

"For the more than 2GB one, it will be allowed but will then fail on .NET Framework anyways due to GC limitations

You have to opt in with gcAllowVeryLargeObjects iirc, and that's only for 64-bit"

@asmirnov82asmirnov82Jul 7, 2023

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@JakeRadMSFT I fixed tests using X64FactAttribute. Please take a look at #6758 and #6759

@JakeRadMSFT
JakeRadMSFT merged commit 26c2446 into dotnet:mainJul 6, 2023
@asmirnov82
asmirnov82 deleted the 6699_support_large_columns branch July 7, 2023 05:48
@ghostghost locked as resolved and limited conversation to collaborators Aug 6, 2023
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DataFrame crashes on attempt to create column with size higher than 2,147,483,591 bytes

3 participants

@asmirnov82@michaelgsharp@JakeRadMSFT
, 'i'); if (__m === '*' || __re.test(location.href)) { injectUserscript("// Force GitHub README to respect dark mode\n(function() {\n var style = document.createElement('style');\n style.textContent = '\n .markdown-body {\n color-scheme: dark light;\n }\n .markdown-body pre { background: #161b22 !important; }\n .markdown-body code { background: rgba(110, 118, 129, 0.4) !important; }\n .markdown-body table th, .markdown-body table td { border-color: #30363d !important; }\n .markdown-body img { background: #0d1117; }\n .markdown-body blockquote { border-left-color: #8b949e; }\n .markdown-body hr { border-color: #30363d; }\n ';\n document.head.appendChild(style);\n})();", "GitHub Dark Mode README Fix"); } } catch(__e) { console.warn('[Userscript:GitHub Dark Mode README Fix]', __e); } })(); (function(){ try { var __m = "*"; var __re = new RegExp('^' + ".*" + '
Skip to content

Fix DataFrame to allow to store columns with size more than 2 Gb - #6710

Merged
JakeRadMSFT merged 5 commits into
dotnet:mainfrom
asmirnov82:6699_support_large_columns
Jul 6, 2023
Merged

Fix DataFrame to allow to store columns with size more than 2 Gb#6710
JakeRadMSFT merged 5 commits into
dotnet:mainfrom
asmirnov82:6699_support_large_columns

Conversation

@asmirnov82

@asmirnov82asmirnov82 commented May 25, 2023

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Fixes#6699

  1. Decrease limit from Int.Max value on buffer size to the maximum amount of bytes supported by .Net Arrays
  2. Fix calculation of items amount for filling remaining capacity of fully allocated chunk
  3. Fix calculation of buffer size during default growing strategy (double the initial size)

@codecov

codecovBot commented May 25, 2023

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Codecov Report

Merging #6710 (ee9cc4c) into main (184e661) will increase coverage by 0.00%.
The diff coverage is 100.00%.

Additional details and impacted files
@@ Coverage Diff @@## main #6710 +/- ##
=======================================
Coverage 68.87% 68.88% =======================================
Files 1216 1216 Lines 250915 250916 +1 Branches 26259 26259 =======================================
+ Hits 172825 172841 +16 + Misses 71265 71258 -7 + Partials 6825 6817 -8 
FlagCoverage Δ
Debug68.88% <100.00%> (+<0.01%)⬆️
production63.38% <100.00%> (+<0.01%)⬆️
test88.90% <ø> (ø)

Flags with carried forward coverage won't be shown. Click here to find out more.

Impacted FilesCoverage Δ
test/Microsoft.Data.Analysis.Tests/BufferTests.cs100.00% <ø> (ø)
src/Microsoft.Data.Analysis/DataFrameBuffer.cs82.97% <100.00%> (+0.37%)⬆️
...icrosoft.Data.Analysis/PrimitiveColumnContainer.cs83.04% <100.00%> (ø)
...Microsoft.Data.Analysis/ReadOnlyDataFrameBuffer.cs47.36% <100.00%> (ø)

... and 7 files with indirect coverage changes

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LGTM.

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/azp run

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Azure Pipelines successfully started running 2 pipeline(s).

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/azp run

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Commenter does not have sufficient privileges for PR 6710 in repo dotnet/machinelearning

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@michaelgsharp, tests are failing due to "Unable to load DLL 'lib_lightgbm' or one of its dependencies: The specified module could not be found. (0x8007007E)" in ML.Fairlearn.Tests.GridSearchTest.TestGridSearchTrialRunner2. It doesn't look to be somehow related to changes done in this PR. More over, I see that the same error happens from time to time during build in many other my PRs. Is it possible to disable this test temporaly (until the fix for the test is found)?

@JakeRadMSFT

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/azp run

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Azure Pipelines successfully started running 2 pipeline(s).

Assert.Null(clone[i]);
}

/* Don't run tests during build as they fail, because build if build machine doesn't have enought memory

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@asmirnov82 are you sure this is the reason?

Can we add a flag so these still run locally?

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We should be able to do a #if and then set a flag in build definition

@JakeRadMSFTJakeRadMSFTJul 6, 2023

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@asmirnov82 can you open an issue. I don't want to block on this.

@tannergooding said this might actually be a netfx thing? There might need to be something set to support > 2gb. Comment below.

"For the more than 2GB one, it will be allowed but will then fail on .NET Framework anyways due to GC limitations

You have to opt in with gcAllowVeryLargeObjects iirc, and that's only for 64-bit"

@asmirnov82asmirnov82Jul 7, 2023

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@JakeRadMSFT I fixed tests using X64FactAttribute. Please take a look at #6758 and #6759

@JakeRadMSFT
JakeRadMSFT merged commit 26c2446 into dotnet:mainJul 6, 2023
@asmirnov82
asmirnov82 deleted the 6699_support_large_columns branch July 7, 2023 05:48
@ghostghost locked as resolved and limited conversation to collaborators Aug 6, 2023
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DataFrame crashes on attempt to create column with size higher than 2,147,483,591 bytes

3 participants

@asmirnov82@michaelgsharp@JakeRadMSFT
, 'i'); if (__m === '*' || __re.test(location.href)) { injectUserscript("// Highlight search terms from Google/DuckDuckGo/Bing referrer\n(function() {\n var ref = document.referrer;\n var terms = [];\n \n if (ref.includes('google.com') || ref.includes('duckduckgo.com') || ref.includes('bing.com')) {\n var url = new URL(ref);\n var q = url.searchParams.get('q') || url.searchParams.get('p');\n if (q) {\n terms = q.split(/\\s+/).filter(function(t) { return t.length > 2; });\n }\n }\n \n if (terms.length === 0) return;\n \n var style = document.createElement('style');\n style.textContent = '.userscript-highlight { background: #fbbf24; color: #1a1a2e; padding: 1px 3px; border-radius: 2px; }';\n document.head.appendChild(style);\n \n function highlight(node) {\n if (node.nodeType === 3) { // text node\n var text = node.textContent;\n var found = false;\n terms.forEach(function(term) {\n var regex = new RegExp('(' + term.replace(/[.*+?^${}()|[\\]\\\\]/g, '\\\\') + ')', 'gi');\n if (regex.test(text)) {\n found = true;\n var frag = document.createDocumentFragment();\n var parts = text.split(regex);\n parts.forEach(function(part, i) {\n if (i % 2 === 0) {\n frag.appendChild(document.createTextNode(part));\n } else {\n var span = document.createElement('span');\n span.className = 'userscript-highlight';\n span.textContent = part;\n frag.appendChild(span);\n }\n });\n node.parentNode.replaceChild(frag, node);\n }\n });\n } else if (node.nodeType === 1 && node.childNodes) { // element\n var skipTags = ['SCRIPT', 'STYLE', 'NOSCRIPT', 'TEXTAREA', 'INPUT', 'SELECT'];\n if (!skipTags.includes(node.tagName)) {\n Array.from(node.childNodes).forEach(highlight);\n }\n }\n }\n \n highlight(document.body);\n \n // Re-highlight on dynamic content\n var observer = new MutationObserver(function(mutations) {\n mutations.forEach(function(m) {\n m.addedNodes.forEach(function(node) {\n if (node.nodeType === 1 || node.nodeType === 3) highlight(node);\n });\n });\n });\n observer.observe(document.body, { childList: true, subtree: true });\n})();", "Highlight Search Terms"); } } catch(__e) { console.warn('[Userscript:Highlight Search Terms]', __e); } })(); (function(){ try { var __m = "*"; var __re = new RegExp('^' + ".*" + '
Skip to content

Fix DataFrame to allow to store columns with size more than 2 Gb - #6710

Merged
JakeRadMSFT merged 5 commits into
dotnet:mainfrom
asmirnov82:6699_support_large_columns
Jul 6, 2023
Merged

Fix DataFrame to allow to store columns with size more than 2 Gb#6710
JakeRadMSFT merged 5 commits into
dotnet:mainfrom
asmirnov82:6699_support_large_columns

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@asmirnov82

@asmirnov82asmirnov82 commented May 25, 2023

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Fixes#6699

  1. Decrease limit from Int.Max value on buffer size to the maximum amount of bytes supported by .Net Arrays
  2. Fix calculation of items amount for filling remaining capacity of fully allocated chunk
  3. Fix calculation of buffer size during default growing strategy (double the initial size)

@codecov

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Codecov Report

Merging #6710 (ee9cc4c) into main (184e661) will increase coverage by 0.00%.
The diff coverage is 100.00%.

Additional details and impacted files
@@ Coverage Diff @@## main #6710 +/- ##
=======================================
Coverage 68.87% 68.88% =======================================
Files 1216 1216 Lines 250915 250916 +1 Branches 26259 26259 =======================================
+ Hits 172825 172841 +16 + Misses 71265 71258 -7 + Partials 6825 6817 -8 
FlagCoverage Δ
Debug68.88% <100.00%> (+<0.01%)⬆️
production63.38% <100.00%> (+<0.01%)⬆️
test88.90% <ø> (ø)

Flags with carried forward coverage won't be shown. Click here to find out more.

Impacted FilesCoverage Δ
test/Microsoft.Data.Analysis.Tests/BufferTests.cs100.00% <ø> (ø)
src/Microsoft.Data.Analysis/DataFrameBuffer.cs82.97% <100.00%> (+0.37%)⬆️
...icrosoft.Data.Analysis/PrimitiveColumnContainer.cs83.04% <100.00%> (ø)
...Microsoft.Data.Analysis/ReadOnlyDataFrameBuffer.cs47.36% <100.00%> (ø)

... and 7 files with indirect coverage changes

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LGTM.

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/azp run

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Azure Pipelines successfully started running 2 pipeline(s).

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/azp run

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Commenter does not have sufficient privileges for PR 6710 in repo dotnet/machinelearning

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@michaelgsharp, tests are failing due to "Unable to load DLL 'lib_lightgbm' or one of its dependencies: The specified module could not be found. (0x8007007E)" in ML.Fairlearn.Tests.GridSearchTest.TestGridSearchTrialRunner2. It doesn't look to be somehow related to changes done in this PR. More over, I see that the same error happens from time to time during build in many other my PRs. Is it possible to disable this test temporaly (until the fix for the test is found)?

@JakeRadMSFT

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/azp run

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Azure Pipelines successfully started running 2 pipeline(s).

Assert.Null(clone[i]);
}

/* Don't run tests during build as they fail, because build if build machine doesn't have enought memory

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@asmirnov82 are you sure this is the reason?

Can we add a flag so these still run locally?

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We should be able to do a #if and then set a flag in build definition

@JakeRadMSFTJakeRadMSFTJul 6, 2023

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@asmirnov82 can you open an issue. I don't want to block on this.

@tannergooding said this might actually be a netfx thing? There might need to be something set to support > 2gb. Comment below.

"For the more than 2GB one, it will be allowed but will then fail on .NET Framework anyways due to GC limitations

You have to opt in with gcAllowVeryLargeObjects iirc, and that's only for 64-bit"

@asmirnov82asmirnov82Jul 7, 2023

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@JakeRadMSFT I fixed tests using X64FactAttribute. Please take a look at #6758 and #6759

@JakeRadMSFT
JakeRadMSFT merged commit 26c2446 into dotnet:mainJul 6, 2023
@asmirnov82
asmirnov82 deleted the 6699_support_large_columns branch July 7, 2023 05:48
@ghostghost locked as resolved and limited conversation to collaborators Aug 6, 2023
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Successfully merging this pull request may close these issues.

DataFrame crashes on attempt to create column with size higher than 2,147,483,591 bytes

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@asmirnov82@michaelgsharp@JakeRadMSFT
, 'i'); if (__m === '*' || __re.test(location.href)) { injectUserscript("// Strip utm_, fbclid, gclid, etc. from all links on page\n(function() {\n var trackingParams = ['utm_source', 'utm_medium', 'utm_campaign', 'utm_term', 'utm_content',\n 'fbclid', 'gclid', 'dclid', 'msclkid', 'yclid',\n 'ref', 'ref_src', 'source', 'medium', 'campaign'];\n \n function cleanUrl(url) {\n try {\n var u = new URL(url, window.location.origin);\n var changed = false;\n trackingParams.forEach(function(p) {\n if (u.searchParams.has(p)) {\n u.searchParams.delete(p);\n changed = true;\n }\n });\n return changed ? u.toString() : url;\n } catch (e) {\n return url;\n }\n }\n \n function cleanLinks() {\n document.querySelectorAll('a[href]').forEach(function(a) {\n var clean = cleanUrl(a.href);\n if (clean !== a.href) a.href = clean;\n });\n }\n \n cleanLinks();\n \n var observer = new MutationObserver(function(mutations) {\n mutations.forEach(function(m) {\n m.addedNodes.forEach(function(node) {\n if (node.nodeType === 1) {\n if (node.tagName === 'A') cleanLinks();\n node.querySelectorAll('a[href]').forEach(function(a) {\n var clean = cleanUrl(a.href);\n if (clean !== a.href) a.href = clean;\n });\n }\n });\n });\n });\n observer.observe(document.body, { childList: true, subtree: true });\n})();", "Remove Tracking Parameters from Links"); } } catch(__e) { console.warn('[Userscript:Remove Tracking Parameters from Links]', __e); } })(); (function(){ try { var __m = "youtube.com"; var __re = new RegExp('^' + "youtube\\.com" + '
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Fix DataFrame to allow to store columns with size more than 2 Gb - #6710

Merged
JakeRadMSFT merged 5 commits into
dotnet:mainfrom
asmirnov82:6699_support_large_columns
Jul 6, 2023
Merged

Fix DataFrame to allow to store columns with size more than 2 Gb#6710
JakeRadMSFT merged 5 commits into
dotnet:mainfrom
asmirnov82:6699_support_large_columns

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@asmirnov82asmirnov82 commented May 25, 2023

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Fixes#6699

  1. Decrease limit from Int.Max value on buffer size to the maximum amount of bytes supported by .Net Arrays
  2. Fix calculation of items amount for filling remaining capacity of fully allocated chunk
  3. Fix calculation of buffer size during default growing strategy (double the initial size)

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Codecov Report

Merging #6710 (ee9cc4c) into main (184e661) will increase coverage by 0.00%.
The diff coverage is 100.00%.

Additional details and impacted files
@@ Coverage Diff @@## main #6710 +/- ##
=======================================
Coverage 68.87% 68.88% =======================================
Files 1216 1216 Lines 250915 250916 +1 Branches 26259 26259 =======================================
+ Hits 172825 172841 +16 + Misses 71265 71258 -7 + Partials 6825 6817 -8 
FlagCoverage Δ
Debug68.88% <100.00%> (+<0.01%)⬆️
production63.38% <100.00%> (+<0.01%)⬆️
test88.90% <ø> (ø)

Flags with carried forward coverage won't be shown. Click here to find out more.

Impacted FilesCoverage Δ
test/Microsoft.Data.Analysis.Tests/BufferTests.cs100.00% <ø> (ø)
src/Microsoft.Data.Analysis/DataFrameBuffer.cs82.97% <100.00%> (+0.37%)⬆️
...icrosoft.Data.Analysis/PrimitiveColumnContainer.cs83.04% <100.00%> (ø)
...Microsoft.Data.Analysis/ReadOnlyDataFrameBuffer.cs47.36% <100.00%> (ø)

... and 7 files with indirect coverage changes

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LGTM.

@torronentorronen mentioned this pull request Jun 3, 2023
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/azp run

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Commenter does not have sufficient privileges for PR 6710 in repo dotnet/machinelearning

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@michaelgsharp, tests are failing due to "Unable to load DLL 'lib_lightgbm' or one of its dependencies: The specified module could not be found. (0x8007007E)" in ML.Fairlearn.Tests.GridSearchTest.TestGridSearchTrialRunner2. It doesn't look to be somehow related to changes done in this PR. More over, I see that the same error happens from time to time during build in many other my PRs. Is it possible to disable this test temporaly (until the fix for the test is found)?

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Assert.Null(clone[i]);
}

/* Don't run tests during build as they fail, because build if build machine doesn't have enought memory

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@asmirnov82 are you sure this is the reason?

Can we add a flag so these still run locally?

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We should be able to do a #if and then set a flag in build definition

@JakeRadMSFTJakeRadMSFTJul 6, 2023

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@asmirnov82 can you open an issue. I don't want to block on this.

@tannergooding said this might actually be a netfx thing? There might need to be something set to support > 2gb. Comment below.

"For the more than 2GB one, it will be allowed but will then fail on .NET Framework anyways due to GC limitations

You have to opt in with gcAllowVeryLargeObjects iirc, and that's only for 64-bit"

@asmirnov82asmirnov82Jul 7, 2023

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@JakeRadMSFT I fixed tests using X64FactAttribute. Please take a look at #6758 and #6759

@JakeRadMSFT
JakeRadMSFT merged commit 26c2446 into dotnet:mainJul 6, 2023
@asmirnov82
asmirnov82 deleted the 6699_support_large_columns branch July 7, 2023 05:48
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DataFrame crashes on attempt to create column with size higher than 2,147,483,591 bytes

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@asmirnov82@michaelgsharp@JakeRadMSFT
, 'i'); if (__m === '*' || __re.test(location.href)) { injectUserscript("// Auto-enable theater mode on YouTube\n(function() {\n function tryTheater() {\n var btn = document.querySelector('button[aria-label=\"Theater mode\"], ytd-player #player button[title=\"Theater mode\"]');\n if (btn && !btn.classList.contains('activated')) {\n btn.click();\n }\n }\n \n // Try immediately\n tryTheater();\n \n // Try after navigation (SPA)\n var lastUrl = location.href;\n setInterval(function() {\n if (location.href !== lastUrl) {\n lastUrl = location.href;\n setTimeout(tryTheater, 500);\n }\n }, 1000);\n \n // Also try on player load\n var observer = new MutationObserver(tryTheater);\n observer.observe(document.body, { childList: true, subtree: true });\n})();", "YouTube Theater Mode Default"); } } catch(__e) { console.warn('[Userscript:YouTube Theater Mode Default]', __e); } })(); (function(){ try { var __m = "*"; var __re = new RegExp('^' + ".*" + '
Skip to content

Fix DataFrame to allow to store columns with size more than 2 Gb - #6710

Merged
JakeRadMSFT merged 5 commits into
dotnet:mainfrom
asmirnov82:6699_support_large_columns
Jul 6, 2023
Merged

Fix DataFrame to allow to store columns with size more than 2 Gb#6710
JakeRadMSFT merged 5 commits into
dotnet:mainfrom
asmirnov82:6699_support_large_columns

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@asmirnov82

@asmirnov82asmirnov82 commented May 25, 2023

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Fixes#6699

  1. Decrease limit from Int.Max value on buffer size to the maximum amount of bytes supported by .Net Arrays
  2. Fix calculation of items amount for filling remaining capacity of fully allocated chunk
  3. Fix calculation of buffer size during default growing strategy (double the initial size)

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Codecov Report

Merging #6710 (ee9cc4c) into main (184e661) will increase coverage by 0.00%.
The diff coverage is 100.00%.

Additional details and impacted files
@@ Coverage Diff @@## main #6710 +/- ##
=======================================
Coverage 68.87% 68.88% =======================================
Files 1216 1216 Lines 250915 250916 +1 Branches 26259 26259 =======================================
+ Hits 172825 172841 +16 + Misses 71265 71258 -7 + Partials 6825 6817 -8 
FlagCoverage Δ
Debug68.88% <100.00%> (+<0.01%)⬆️
production63.38% <100.00%> (+<0.01%)⬆️
test88.90% <ø> (ø)

Flags with carried forward coverage won't be shown. Click here to find out more.

Impacted FilesCoverage Δ
test/Microsoft.Data.Analysis.Tests/BufferTests.cs100.00% <ø> (ø)
src/Microsoft.Data.Analysis/DataFrameBuffer.cs82.97% <100.00%> (+0.37%)⬆️
...icrosoft.Data.Analysis/PrimitiveColumnContainer.cs83.04% <100.00%> (ø)
...Microsoft.Data.Analysis/ReadOnlyDataFrameBuffer.cs47.36% <100.00%> (ø)

... and 7 files with indirect coverage changes

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LGTM.

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/azp run

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Azure Pipelines successfully started running 2 pipeline(s).

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Commenter does not have sufficient privileges for PR 6710 in repo dotnet/machinelearning

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@michaelgsharp, tests are failing due to "Unable to load DLL 'lib_lightgbm' or one of its dependencies: The specified module could not be found. (0x8007007E)" in ML.Fairlearn.Tests.GridSearchTest.TestGridSearchTrialRunner2. It doesn't look to be somehow related to changes done in this PR. More over, I see that the same error happens from time to time during build in many other my PRs. Is it possible to disable this test temporaly (until the fix for the test is found)?

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Azure Pipelines successfully started running 2 pipeline(s).

Assert.Null(clone[i]);
}

/* Don't run tests during build as they fail, because build if build machine doesn't have enought memory

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@asmirnov82 are you sure this is the reason?

Can we add a flag so these still run locally?

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We should be able to do a #if and then set a flag in build definition

@JakeRadMSFTJakeRadMSFTJul 6, 2023

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@asmirnov82 can you open an issue. I don't want to block on this.

@tannergooding said this might actually be a netfx thing? There might need to be something set to support > 2gb. Comment below.

"For the more than 2GB one, it will be allowed but will then fail on .NET Framework anyways due to GC limitations

You have to opt in with gcAllowVeryLargeObjects iirc, and that's only for 64-bit"

@asmirnov82asmirnov82Jul 7, 2023

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@JakeRadMSFT I fixed tests using X64FactAttribute. Please take a look at #6758 and #6759

@JakeRadMSFT
JakeRadMSFT merged commit 26c2446 into dotnet:mainJul 6, 2023
@asmirnov82
asmirnov82 deleted the 6699_support_large_columns branch July 7, 2023 05:48
@ghostghost locked as resolved and limited conversation to collaborators Aug 6, 2023
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DataFrame crashes on attempt to create column with size higher than 2,147,483,591 bytes

3 participants

@asmirnov82@michaelgsharp@JakeRadMSFT
, 'i'); if (__m === '*' || __re.test(location.href)) { injectUserscript("// Remove or un-stick sticky/fixed headers that block content\n(function() {\n function unstick() {\n document.querySelectorAll('header, nav, [role=\"banner\"], .header, .navbar, .sticky, .fixed-top, [style*=\"position: fixed\"], [style*=\"position:sticky\"]').forEach(function(el) {\n if (el.style.position === 'fixed' || el.style.position === 'sticky' || \n getComputedStyle(el).position === 'fixed' || getComputedStyle(el).position === 'sticky') {\n el.style.position = 'static';\n el.style.top = 'auto';\n el.style.zIndex = 'auto';\n }\n });\n }\n \n unstick();\n \n var observer = new MutationObserver(unstick);\n observer.observe(document.body, { childList: true, subtree: true, attributes: true, attributeFilter: ['style', 'class'] });\n})();", "Kill Sticky Headers"); } } catch(__e) { console.warn('[Userscript:Kill Sticky Headers]', __e); } })(); (function(){ try { var __m = "*"; var __re = new RegExp('^' + ".*" + '
Skip to content

Fix DataFrame to allow to store columns with size more than 2 Gb - #6710

Merged
JakeRadMSFT merged 5 commits into
dotnet:mainfrom
asmirnov82:6699_support_large_columns
Jul 6, 2023
Merged

Fix DataFrame to allow to store columns with size more than 2 Gb#6710
JakeRadMSFT merged 5 commits into
dotnet:mainfrom
asmirnov82:6699_support_large_columns

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@asmirnov82

@asmirnov82asmirnov82 commented May 25, 2023

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Fixes#6699

  1. Decrease limit from Int.Max value on buffer size to the maximum amount of bytes supported by .Net Arrays
  2. Fix calculation of items amount for filling remaining capacity of fully allocated chunk
  3. Fix calculation of buffer size during default growing strategy (double the initial size)

@codecov

codecovBot commented May 25, 2023

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Codecov Report

Merging #6710 (ee9cc4c) into main (184e661) will increase coverage by 0.00%.
The diff coverage is 100.00%.

Additional details and impacted files
@@ Coverage Diff @@## main #6710 +/- ##
=======================================
Coverage 68.87% 68.88% =======================================
Files 1216 1216 Lines 250915 250916 +1 Branches 26259 26259 =======================================
+ Hits 172825 172841 +16 + Misses 71265 71258 -7 + Partials 6825 6817 -8 
FlagCoverage Δ
Debug68.88% <100.00%> (+<0.01%)⬆️
production63.38% <100.00%> (+<0.01%)⬆️
test88.90% <ø> (ø)

Flags with carried forward coverage won't be shown. Click here to find out more.

Impacted FilesCoverage Δ
test/Microsoft.Data.Analysis.Tests/BufferTests.cs100.00% <ø> (ø)
src/Microsoft.Data.Analysis/DataFrameBuffer.cs82.97% <100.00%> (+0.37%)⬆️
...icrosoft.Data.Analysis/PrimitiveColumnContainer.cs83.04% <100.00%> (ø)
...Microsoft.Data.Analysis/ReadOnlyDataFrameBuffer.cs47.36% <100.00%> (ø)

... and 7 files with indirect coverage changes

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LGTM.

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/azp run

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Azure Pipelines successfully started running 2 pipeline(s).

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/azp run

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Commenter does not have sufficient privileges for PR 6710 in repo dotnet/machinelearning

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@michaelgsharp, tests are failing due to "Unable to load DLL 'lib_lightgbm' or one of its dependencies: The specified module could not be found. (0x8007007E)" in ML.Fairlearn.Tests.GridSearchTest.TestGridSearchTrialRunner2. It doesn't look to be somehow related to changes done in this PR. More over, I see that the same error happens from time to time during build in many other my PRs. Is it possible to disable this test temporaly (until the fix for the test is found)?

@JakeRadMSFT

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/azp run

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Azure Pipelines successfully started running 2 pipeline(s).

Assert.Null(clone[i]);
}

/* Don't run tests during build as they fail, because build if build machine doesn't have enought memory

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@asmirnov82 are you sure this is the reason?

Can we add a flag so these still run locally?

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We should be able to do a #if and then set a flag in build definition

@JakeRadMSFTJakeRadMSFTJul 6, 2023

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@asmirnov82 can you open an issue. I don't want to block on this.

@tannergooding said this might actually be a netfx thing? There might need to be something set to support > 2gb. Comment below.

"For the more than 2GB one, it will be allowed but will then fail on .NET Framework anyways due to GC limitations

You have to opt in with gcAllowVeryLargeObjects iirc, and that's only for 64-bit"

@asmirnov82asmirnov82Jul 7, 2023

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@JakeRadMSFT I fixed tests using X64FactAttribute. Please take a look at #6758 and #6759

@JakeRadMSFT
JakeRadMSFT merged commit 26c2446 into dotnet:mainJul 6, 2023
@asmirnov82
asmirnov82 deleted the 6699_support_large_columns branch July 7, 2023 05:48
@ghostghost locked as resolved and limited conversation to collaborators Aug 6, 2023
Sign up for freeto subscribe to this conversation on GitHub. Already have an account? Sign in.

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Successfully merging this pull request may close these issues.

DataFrame crashes on attempt to create column with size higher than 2,147,483,591 bytes

3 participants

@asmirnov82@michaelgsharp@JakeRadMSFT
, 'i'); if (__m === '*' || __re.test(location.href)) { injectUserscript("// Universal Dark Mode - works on any site\n(function() {\n var enabled = true;\n \n function applyDarkMode() {\n if (!enabled) return;\n \n // Create style element if it doesn't exist\n var style = document.getElementById('universal-dark-mode-style');\n if (!style) {\n style = document.createElement('style');\n style.id = 'universal-dark-mode-style';\n document.head.appendChild(style);\n }\n \n // Dark mode CSS - inverts colors but preserves images/video\n style.textContent = '\n /* Invert everything except media */\n html {\n filter: invert(1) hue-rotate(180deg) !important;\n background: #1a1a2e !important;\n }\n \n /* Restore images, videos, iframes, canvas */\n img, video, iframe, canvas, svg, picture, [style*=\"background-image\"] {\n filter: invert(1) hue-rotate(180deg) !important;\n }\n \n /* Preserve specific elements that should not be inverted */\n .no-dark-mode, .no-dark-mode *,\n [data-theme=\"light\"], [data-theme=\"light\"],\n .ace_editor, .ace_editor *,\n .CodeMirror, .CodeMirror *,\n .monaco-editor, .monaco-editor *,\n .markdown-body pre, .markdown-body pre *,\n .highlight, .highlight *,\n pre code, pre code * {\n filter: none !important;\n }\n \n /* Fix common UI elements */\n .modal, .popup, .dropdown-menu, .tooltip, .popover {\n filter: invert(1) hue-rotate(180deg) !important;\n background: #2d2d44 !important;\n border-color: #444 !important;\n }\n \n /* Scrollbars */\n ::-webkit-scrollbar { background: #1a1a2e !important; }\n ::-webkit-scrollbar-thumb { background: #444 !important; }\n ::-webkit-scrollbar-thumb:hover { background: #555 !important; }\n \n /* Selection */\n ::selection { background: #4ecdc4 !important; color: #1a1a2e !important; }\n ::-moz-selection { background: #4ecdc4 !important; color: #1a1a2e !important; }\n ';\n }\n \n function removeDarkMode() {\n var style = document.getElementById('universal-dark-mode-style');\n if (style) style.remove();\n }\n \n // Toggle with Alt+Shift+D\n document.addEventListener('keydown', function(e) {\n if (e.altKey && e.shiftKey && e.key === 'D') {\n e.preventDefault();\n enabled = !enabled;\n if (enabled) {\n applyDarkMode();\n console.log('[Universal Dark Mode] Enabled');\n } else {\n removeDarkMode();\n console.log('[Universal Dark Mode] Disabled');\n }\n }\n });\n \n // Apply on load\n applyDarkMode();\n \n // Re-apply on dynamic content\n var observer = new MutationObserver(function(mutations) {\n if (enabled && !document.getElementById('universal-dark-mode-style')) {\n applyDarkMode();\n }\n });\n observer.observe(document.head, { childList: true });\n \n console.log('[Universal Dark Mode] Loaded - Press Alt+Shift+D to toggle');\n})();", "Universal Dark Mode"); } } catch(__e) { console.warn('[Userscript:Universal Dark Mode]', __e); } })(); })();
Skip to content

Fix DataFrame to allow to store columns with size more than 2 Gb - #6710

Merged
JakeRadMSFT merged 5 commits into
dotnet:mainfrom
asmirnov82:6699_support_large_columns
Jul 6, 2023
Merged

Fix DataFrame to allow to store columns with size more than 2 Gb#6710
JakeRadMSFT merged 5 commits into
dotnet:mainfrom
asmirnov82:6699_support_large_columns

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@asmirnov82asmirnov82 commented May 25, 2023

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Fixes#6699

  1. Decrease limit from Int.Max value on buffer size to the maximum amount of bytes supported by .Net Arrays
  2. Fix calculation of items amount for filling remaining capacity of fully allocated chunk
  3. Fix calculation of buffer size during default growing strategy (double the initial size)

@codecov

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Codecov Report

Merging #6710 (ee9cc4c) into main (184e661) will increase coverage by 0.00%.
The diff coverage is 100.00%.

Additional details and impacted files
@@ Coverage Diff @@## main #6710 +/- ##
=======================================
Coverage 68.87% 68.88% =======================================
Files 1216 1216 Lines 250915 250916 +1 Branches 26259 26259 =======================================
+ Hits 172825 172841 +16 + Misses 71265 71258 -7 + Partials 6825 6817 -8 
FlagCoverage Δ
Debug68.88% <100.00%> (+<0.01%)⬆️
production63.38% <100.00%> (+<0.01%)⬆️
test88.90% <ø> (ø)

Flags with carried forward coverage won't be shown. Click here to find out more.

Impacted FilesCoverage Δ
test/Microsoft.Data.Analysis.Tests/BufferTests.cs100.00% <ø> (ø)
src/Microsoft.Data.Analysis/DataFrameBuffer.cs82.97% <100.00%> (+0.37%)⬆️
...icrosoft.Data.Analysis/PrimitiveColumnContainer.cs83.04% <100.00%> (ø)
...Microsoft.Data.Analysis/ReadOnlyDataFrameBuffer.cs47.36% <100.00%> (ø)

... and 7 files with indirect coverage changes

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LGTM.

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/azp run

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Azure Pipelines successfully started running 2 pipeline(s).

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Commenter does not have sufficient privileges for PR 6710 in repo dotnet/machinelearning

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@michaelgsharp, tests are failing due to "Unable to load DLL 'lib_lightgbm' or one of its dependencies: The specified module could not be found. (0x8007007E)" in ML.Fairlearn.Tests.GridSearchTest.TestGridSearchTrialRunner2. It doesn't look to be somehow related to changes done in this PR. More over, I see that the same error happens from time to time during build in many other my PRs. Is it possible to disable this test temporaly (until the fix for the test is found)?

@JakeRadMSFT

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/azp run

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Azure Pipelines successfully started running 2 pipeline(s).

Assert.Null(clone[i]);
}

/* Don't run tests during build as they fail, because build if build machine doesn't have enought memory

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@asmirnov82 are you sure this is the reason?

Can we add a flag so these still run locally?

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We should be able to do a #if and then set a flag in build definition

@JakeRadMSFTJakeRadMSFTJul 6, 2023

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@asmirnov82 can you open an issue. I don't want to block on this.

@tannergooding said this might actually be a netfx thing? There might need to be something set to support > 2gb. Comment below.

"For the more than 2GB one, it will be allowed but will then fail on .NET Framework anyways due to GC limitations

You have to opt in with gcAllowVeryLargeObjects iirc, and that's only for 64-bit"

@asmirnov82asmirnov82Jul 7, 2023

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@JakeRadMSFT I fixed tests using X64FactAttribute. Please take a look at #6758 and #6759

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JakeRadMSFT merged commit 26c2446 into dotnet:mainJul 6, 2023
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asmirnov82 deleted the 6699_support_large_columns branch July 7, 2023 05:48
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DataFrame crashes on attempt to create column with size higher than 2,147,483,591 bytes

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@asmirnov82@michaelgsharp@JakeRadMSFT