DSBMS — Hugo site

A static site for the Data Science & Bioinformatics for Mass Spectrometry of Small Molecules (DSBMS) group, IBG-5, Forschungszentrum Jülich. Synthesized from the frozen v1 design (see ../versions/v1/).

Layout

hugo/
├── hugo.toml # config, params, main menu
├── content/ # one folder per section
│ ├── _index.md # home
│ ├── research/_index.md
│ ├── tools/_index.md
│ ├── standards/_index.md
│ ├── team/_index.md
│ └── publications/ # one Markdown file per paper (front-matter only)
├── data/ # the editable content for data-driven pages
│ ├── research.yaml # four research areas + applications
│ ├── tools.yaml # tool cards (delivery type, OS, links, registries)
│ ├── standards.yaml # standards cards
│ └── team.yaml # lead, members, former members
├── layouts/ # templates
│ ├── _default/baseof.html
│ ├── partials/{header,footer}.html
│ ├── index.html # landing
│ ├── research/list.html
│ ├── tools/list.html
│ ├── standards/list.html
│ ├── team/list.html
│ └── publications/{list,single}.html
└── static/
├── css/main.css # the whole design system
└── img/emblem.png

Editing content

• Tools — edit data/tools.yaml. Each tool: set web / desktop / library / rest booleans, an os list (shown for desktop tools), and paste URLs into github, docker, biotools, conda, bioconductor, denbi. An empty string renders a dashed "to be added" chip. external: true marks a third-party tool (e.g. Skyline).
• Team — edit data/team.yaml (lead, members, former). Replace the placeholder names, focus lines and linkedin URLs.
• Research / Standards — edit the YAML in data/.
• Publications — add a Markdown file in content/publications/. Copy an existing one; all content lives in the front matter (area, areanum, weight, tag, year, venue, authors, doi, toolurl, idea, lead, concepts, findings). areanum groups papers; weight orders them.
• Portraits — drop images in static/img/ and swap the .portrait placeholders in layouts/team/list.html for <img> tags.

Run locally

hugo server -D # needs Hugo extended ≥ 0.128

Open http://localhost:1313.

Deploy to GitHub Pages

1. Push the contents of this hugo/ folder to the root of the DSBMS repository (so hugo.toml sits at the repo root). The included .github/workflows/hugo.yml builds and deploys on every push to main.
2. In the repo: Settings → Pages → Build and deployment → Source: GitHub Actions.

The workflow sets --baseURL automatically from the Pages URL, so project-site sub-paths work without editing hugo.toml.