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@epiforecasts

Epiforecasts

Researchers at the London School of Hygiene & Tropical Medicine doing research to forecast infectious diseases and perform real-time analyses.
README.md

We are a research group based at the Centre for Mathematical Modelling of Infectious Diseases of the London School of Hygiene & Tropical Medicine developing methodology and tools for real-time modelling and forecasting of infectious disease outbreaks. We systematically assess these methods by their predictive ability and apply them in order to improve decision making. Ultimately, our goal is to develop and use robust methodology that makes the most of available resources to provide insights useful for outbreak response, control and prevention, and to make them available as tools to others.

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  1. EpiNow2EpiNow2Public

    Estimate Realtime Case Counts and Time-varying Epidemiological Parameters

    R 140 40

  2. covidregionaldatacovidregionaldataPublic

    An interface to subnational and national level COVID-19 data. For all countries supported, this includes a daily time-series of cases. Wherever available we also provide data on deaths, hospitalisa…

    R 37 16

  3. covid19.nhs.datacovid19.nhs.dataPublic

    Trust-level COVID-19 hospitalisations in England

    R 8 3

  4. socialmixrsocialmixrPublic

    Derive social mixing matrices from survey data.

    R 44 15

  5. omicron-sgtf-forecastomicron-sgtf-forecastPublic

    In this work, we use S-gene target failure (SGTF) as a proxy of variant status combined with reported case counts to explore the evidence for changes in transmission advantage over time for the Omi…

    R 15 4

  6. scoringutilsscoringutilsPublic

    Utilities for Scoring and Assessing Predictions

    R 63 25

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