Evolutionary Bioinformatics

Dockerfiles for tools commonly used for phylogenetic analyses

Dockerfile 9 9 1 1 Updated Aug 10, 2026

Python 6GPL-3.0 2 0 0 Updated Jul 30, 2026

PhyloDeep is a python library for parameter estimation and model selection from phylogenetic trees, based on deep learning.

Python 30 7 5 1 Updated Jul 21, 2026

gotree Public

Gotree: a set of command line tools and an API to manipulate phylogenetic trees.

Go 150GPL-2.0 19 2 0 Updated Jul 15, 2026

goalign Public

Goalign : a set of command line tools and an API to manipulate multiple sequence alignments.

Go 90GPL-2.0 8 0 0 Updated Jul 15, 2026

pastml Public

Ancestral character reconstruction and visualisation for rooted phylogenetic trees

Python 42GPL-3.0 8 10 0 Updated Apr 17, 2026

bdct Public

Birth-death epidemiological parameter estimator accounting for partner notification

Python 3GPL-3.0 0 0 0 Updated Feb 24, 2026

ConDor: a workflow to detect convergent evolution in large protein alignments

Python 5 3 0 0 Updated Jan 13, 2026

bdei Public

Birth-Death Exposed-Infectious (BDEI) model parameter inference from phylogenetic trees

Python 5LGPL-2.1 0 0 0 Updated Apr 14, 2025

Nextflow 2 0 0 0 Updated Sep 20, 2024

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