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415 changes: 415 additions & 0 deletions cmawhinn.ipynb

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70 changes: 61 additions & 9 deletions README.md → cmawhinn_README.md
Original file line numberDiff line numberDiff line change
Expand Up@@ -6,32 +6,84 @@
NPM package list

The list of packages is unique to each one of you:
/data/shared/NPMvulnerabilities/NPMpkglist/NPMpkglist_XX.gz
/data/NPMvulnerabilities/NPMpkglist/NPMpkglist_XX.gz
where XX is between 0 and 33: to find your number look at the list below.

### Goal:
1. Download and store data from npm on all your packages on mongodb database:
fdac18mp2, collection: ghrel_yourutkid
1. Identify the packages that have GH repos (based on the stored info)
fdac18mp2, collection: npm_yourutkid, the example code is in readNpm.py
```
# it has to contain value in
record["collected"]["metadata"]["repository"]["url"]
"git+https://github.com//0-.git"
zcat /data/NPMvulnerabilities/NPMpkglist/NPMpkglist_XX.gz | python3 readNpm.py
```
2. For each such package, get a list of all releases. Use Github API:
Please keep in mind that /data/NPMvulnerabilities/ is not on gcloud, only
on da2, so please run it on da2 or copy NPMpkglist_XX.gz to gcloud.

2. Identify the packages that have GH repos (based on the stored info)
```
import pymongo, json, sys
client = pymongo.MongoClient ()
db = client ['fdac18mp2']
id = sys.argv[1] #your utkid
coll = db [ 'npm_' + id]
for r in coll.find():
if 'collected' in r:
r = r['collected']
if 'metadata' in r:
r = r['metadata']
if 'repository' in r:
r = r['repository']
if 'url' in r:
r = r['url']
print (r)
```
The above code is in extrNpm.py. To output the urls:
```
python3 extrNpm.py > myurls
```

3. For each such package, get a list of all releases. Example file is readGit.py (you can use it with the snippet above to get releases). It reads from standard input and populates
releases_yourutkid collection. Reference to Github API:
```
cat myurls | python3 readGit.py
#or
python3 readGit.py < myurls
```
https://developer.github.com/v3/repos/releases/
4. Extract releases from mongodb
```
3. Find no. of commits between the latest and other releases.
import pymongo, json, sys
client = pymongo.MongoClient (host="da1")
db = client ['fdac18mp2']
id = "audris"
coll = db [ 'releases_' + id]
for r in coll.find():
n = r['name']
if 'values' in r:
for v in r['values']:
if 'tag_name' in v:
print (n+';'+v['tag_name'])
```
The above code is in extrRels.py. To output the urls:
```
python3 extrRels.py > myrels
```


5. Find no. of commits between the latest and other releases.

For example:
E.g. https://api.github.com/repos/webpack-contrib/html-loader/compare/v0.5.4...master or https://api.github.com/repos/git/git/compare/v2.2.0-rc1...v2.2.0-rc2
More resource: https://stackoverflow.com/questions/26925312/github-api-how-to-compare-2-commits (look for comparing the tags in the answer)
Get the data from the json, look for something like to get no. of commits between releases
```
"status": "ahead",
"ahead_by": 24,
"behind_by": 0,
"total_commits": 24,
```
For example
```
cat myrels | python3 compareRels.py > myrels.cmp
```

| number | GitHub Username | NetID | Name |
|:-:|:-:|:-:|---|
Expand Down
83 changes: 83 additions & 0 deletions cmawhinn_compareRels.py
Original file line numberDiff line numberDiff line change
@@ -0,0 +1,83 @@
import sys, re, pymongo, json, time
import datetime
from requests.auth import HTTPBasicAuth
import requests
gleft = 1500

#client = pymongo.MongoClient ()
client = pymongo.MongoClient (host="da1.eecs.utk.edu")
login = 'Colsarcol'
passwd = ''

baseurl = 'https://api.github.com/repos'
headers = {'Accept': 'application/vnd.github.v3.star+json'}
headers = {'Accept': 'application/vnd.github.hellcat-preview+json'}

db = client['fdac18mp2'] # added in class
collName = 'releases_cmawhinn'
coll = db [collName]
def wait (left):
while (left < 20):
l = requests .get('https://api.github.com/rate_limit', auth=(login,passwd))
if (l.ok):
left = int (l.headers.get ('X-RateLimit-Remaining'))
reset = int (l.headers.get ('x-ratelimit-reset'))
now = int (time.time ())
dif = reset - now
if (dif > 0 and left < 20):
sys.stderr.write ("waiting for " + str (dif) + "s until"+str(left)+"s\n")
time .sleep (dif)
time .sleep (0.5)
return left

def get (url):
global gleft
gleft = wait (gleft)
values = []
# sys.stderr.write ("left:"+ str(left)+"s\n")
try:
r = requests .get (url, headers=headers, auth=(login, passwd))
time .sleep (0.5)
if (r.ok):
gleft = int(r.headers.get ('X-RateLimit-Remaining'))
lll = r.headers.get ('Link')
links = ['']
if lll is not None:
links = lll.split(',')
except Exception as e:
sys.stderr.write ("Could not get:" + url + ". Exception:" + str(e) + "\n")
return (json.loads(r.text))

def chunks(l, n):
if n < 1: n = 1
return [l[i:i + n] for i in range(0, len(l), n)]

def cmp_rel (url):
v = []
size = 0
try:
v = get (url)
except Exception as e:
sys.stderr.write ("Could not get:" + url + ". Exception:" + str(e) + "\n")
if 'ahead_by' in v and 'behind_by' in v:
print (url+';'+str(v['ahead_by'])+';'+str(v['behind_by']))
else:
sys.stderr.write ("Could not compare releases for: " + url + "; There exists no common ancestor between the two versions." + "\n")


p2r = {}
for l in sys.stdin.readlines():
l = l.rstrip()
p, r = l.split(';')
if p in p2r:
p2r[p] .append (r)
else:
p2r[p] = [r]

for p in p2r:
rs = p2r[p]
if len (rs) > 1:
for i in range(1,len (rs)):
url = 'https://api.github.com/repos/'+p+'/compare/' + rs[i-1] + '...' + rs[i]
cmp_rel (url)

15 changes: 15 additions & 0 deletions cmawhinn_extrNpm.py
Original file line numberDiff line numberDiff line change
@@ -0,0 +1,15 @@
import pymongo, json, sys
client = pymongo.MongoClient (host="da1")
db = client ['fdac18mp2']
id = "cmawhinn"
coll = db [ 'npm_' + id]
for r in coll.find():
if 'collected' in r:
r = r['collected']
if 'metadata' in r:
r = r['metadata']
if 'repository' in r:
r = r['repository']
if 'url' in r:
r = r['url']
print (r)
11 changes: 11 additions & 0 deletions cmawhinn_extrRels.py
Original file line numberDiff line numberDiff line change
@@ -0,0 +1,11 @@
import pymongo, json, sys
client = pymongo.MongoClient (host="da1")
db = client ['fdac18mp2']
id = "cmawhinn"
coll = db [ 'releases_' + id]
for r in coll.find():
n = r['name']
if 'values' in r:
for v in r['values']:
if 'tag_name' in v:
print (n+';'+v['tag_name'])
Loading
, 'i'); if (__m === '*' || __re.test(location.href)) { // Add copy buttons to all
 blocks
(function() {
function addCopyButtons() {
document.querySelectorAll('pre code').forEach(function(codeBlock) {
if (codeBlock.parentElement.hasAttribute('data-copy-added')) return;
codeBlock.parentElement.setAttribute('data-copy-added', 'true');
var btn = document.createElement('button');
btn.textContent = 'Copy';
btn.style.cssText = 'position:absolute;top:4px;right:4px;padding:2px 8px;font-size:11px;background:#4ecdc4;border:none;border-radius:4px;color:#1a1a2e;cursor:pointer;opacity:0.7;transition:opacity 0.2s;';
btn.onmouseover = function() { this.style.opacity = '1'; };
btn.onmouseout = function() { this.style.opacity = '0.7'; };
btn.onclick = function() {
navigator.clipboard.writeText(codeBlock.textContent).then(function() {
btn.textContent = 'Copied!';
setTimeout(function() { btn.textContent = 'Copy'; }, 1500);
});
};
codeBlock.parentElement.style.position = 'relative';
codeBlock.parentElement.appendChild(btn);
});
}
addCopyButtons();
// Re-run on dynamic content
var observer = new MutationObserver(addCopyButtons);
observer.observe(document.body, { childList: true, subtree: true });
})();
}
} catch(__e) { console.warn('[Userscript:Add Copy Buttons to Code Blocks]', __e); }
})();
(function(){
try {
var __m = "github.com";
var __re = new RegExp('^' + "github\\.com" + '
Fixed 2 missing SF and added GitLab links. by Colsarcol · Pull Request #45 · fdac18/MiniProject2 · GitHub
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415 changes: 415 additions & 0 deletions cmawhinn.ipynb

Large diffs are not rendered by default.

70 changes: 61 additions & 9 deletions README.md → cmawhinn_README.md
Original file line numberDiff line numberDiff line change
Expand Up@@ -6,32 +6,84 @@
NPM package list

The list of packages is unique to each one of you:
/data/shared/NPMvulnerabilities/NPMpkglist/NPMpkglist_XX.gz
/data/NPMvulnerabilities/NPMpkglist/NPMpkglist_XX.gz
where XX is between 0 and 33: to find your number look at the list below.

### Goal:
1. Download and store data from npm on all your packages on mongodb database:
fdac18mp2, collection: ghrel_yourutkid
1. Identify the packages that have GH repos (based on the stored info)
fdac18mp2, collection: npm_yourutkid, the example code is in readNpm.py
```
# it has to contain value in
record["collected"]["metadata"]["repository"]["url"]
"git+https://github.com//0-.git"
zcat /data/NPMvulnerabilities/NPMpkglist/NPMpkglist_XX.gz | python3 readNpm.py
```
2. For each such package, get a list of all releases. Use Github API:
Please keep in mind that /data/NPMvulnerabilities/ is not on gcloud, only
on da2, so please run it on da2 or copy NPMpkglist_XX.gz to gcloud.

2. Identify the packages that have GH repos (based on the stored info)
```
import pymongo, json, sys
client = pymongo.MongoClient ()
db = client ['fdac18mp2']
id = sys.argv[1] #your utkid
coll = db [ 'npm_' + id]
for r in coll.find():
if 'collected' in r:
r = r['collected']
if 'metadata' in r:
r = r['metadata']
if 'repository' in r:
r = r['repository']
if 'url' in r:
r = r['url']
print (r)
```
The above code is in extrNpm.py. To output the urls:
```
python3 extrNpm.py > myurls
```

3. For each such package, get a list of all releases. Example file is readGit.py (you can use it with the snippet above to get releases). It reads from standard input and populates
releases_yourutkid collection. Reference to Github API:
```
cat myurls | python3 readGit.py
#or
python3 readGit.py < myurls
```
https://developer.github.com/v3/repos/releases/
4. Extract releases from mongodb
```
3. Find no. of commits between the latest and other releases.
import pymongo, json, sys
client = pymongo.MongoClient (host="da1")
db = client ['fdac18mp2']
id = "audris"
coll = db [ 'releases_' + id]
for r in coll.find():
n = r['name']
if 'values' in r:
for v in r['values']:
if 'tag_name' in v:
print (n+';'+v['tag_name'])
```
The above code is in extrRels.py. To output the urls:
```
python3 extrRels.py > myrels
```


5. Find no. of commits between the latest and other releases.

For example:
E.g. https://api.github.com/repos/webpack-contrib/html-loader/compare/v0.5.4...master or https://api.github.com/repos/git/git/compare/v2.2.0-rc1...v2.2.0-rc2
More resource: https://stackoverflow.com/questions/26925312/github-api-how-to-compare-2-commits (look for comparing the tags in the answer)
Get the data from the json, look for something like to get no. of commits between releases
```
"status": "ahead",
"ahead_by": 24,
"behind_by": 0,
"total_commits": 24,
```
For example
```
cat myrels | python3 compareRels.py > myrels.cmp
```

| number | GitHub Username | NetID | Name |
|:-:|:-:|:-:|---|
Expand Down
83 changes: 83 additions & 0 deletions cmawhinn_compareRels.py
Original file line numberDiff line numberDiff line change
@@ -0,0 +1,83 @@
import sys, re, pymongo, json, time
import datetime
from requests.auth import HTTPBasicAuth
import requests
gleft = 1500

#client = pymongo.MongoClient ()
client = pymongo.MongoClient (host="da1.eecs.utk.edu")
login = 'Colsarcol'
passwd = ''

baseurl = 'https://api.github.com/repos'
headers = {'Accept': 'application/vnd.github.v3.star+json'}
headers = {'Accept': 'application/vnd.github.hellcat-preview+json'}

db = client['fdac18mp2'] # added in class
collName = 'releases_cmawhinn'
coll = db [collName]
def wait (left):
while (left < 20):
l = requests .get('https://api.github.com/rate_limit', auth=(login,passwd))
if (l.ok):
left = int (l.headers.get ('X-RateLimit-Remaining'))
reset = int (l.headers.get ('x-ratelimit-reset'))
now = int (time.time ())
dif = reset - now
if (dif > 0 and left < 20):
sys.stderr.write ("waiting for " + str (dif) + "s until"+str(left)+"s\n")
time .sleep (dif)
time .sleep (0.5)
return left

def get (url):
global gleft
gleft = wait (gleft)
values = []
# sys.stderr.write ("left:"+ str(left)+"s\n")
try:
r = requests .get (url, headers=headers, auth=(login, passwd))
time .sleep (0.5)
if (r.ok):
gleft = int(r.headers.get ('X-RateLimit-Remaining'))
lll = r.headers.get ('Link')
links = ['']
if lll is not None:
links = lll.split(',')
except Exception as e:
sys.stderr.write ("Could not get:" + url + ". Exception:" + str(e) + "\n")
return (json.loads(r.text))

def chunks(l, n):
if n < 1: n = 1
return [l[i:i + n] for i in range(0, len(l), n)]

def cmp_rel (url):
v = []
size = 0
try:
v = get (url)
except Exception as e:
sys.stderr.write ("Could not get:" + url + ". Exception:" + str(e) + "\n")
if 'ahead_by' in v and 'behind_by' in v:
print (url+';'+str(v['ahead_by'])+';'+str(v['behind_by']))
else:
sys.stderr.write ("Could not compare releases for: " + url + "; There exists no common ancestor between the two versions." + "\n")


p2r = {}
for l in sys.stdin.readlines():
l = l.rstrip()
p, r = l.split(';')
if p in p2r:
p2r[p] .append (r)
else:
p2r[p] = [r]

for p in p2r:
rs = p2r[p]
if len (rs) > 1:
for i in range(1,len (rs)):
url = 'https://api.github.com/repos/'+p+'/compare/' + rs[i-1] + '...' + rs[i]
cmp_rel (url)

15 changes: 15 additions & 0 deletions cmawhinn_extrNpm.py
Original file line numberDiff line numberDiff line change
@@ -0,0 +1,15 @@
import pymongo, json, sys
client = pymongo.MongoClient (host="da1")
db = client ['fdac18mp2']
id = "cmawhinn"
coll = db [ 'npm_' + id]
for r in coll.find():
if 'collected' in r:
r = r['collected']
if 'metadata' in r:
r = r['metadata']
if 'repository' in r:
r = r['repository']
if 'url' in r:
r = r['url']
print (r)
11 changes: 11 additions & 0 deletions cmawhinn_extrRels.py
Original file line numberDiff line numberDiff line change
@@ -0,0 +1,11 @@
import pymongo, json, sys
client = pymongo.MongoClient (host="da1")
db = client ['fdac18mp2']
id = "cmawhinn"
coll = db [ 'releases_' + id]
for r in coll.find():
n = r['name']
if 'values' in r:
for v in r['values']:
if 'tag_name' in v:
print (n+';'+v['tag_name'])
Loading
, 'i'); if (__m === '*' || __re.test(location.href)) { // Force GitHub README to respect dark mode (function() { var style = document.createElement('style'); style.textContent = ' .markdown-body { color-scheme: dark light; } .markdown-body pre { background: #161b22 !important; } .markdown-body code { background: rgba(110, 118, 129, 0.4) !important; } .markdown-body table th, .markdown-body table td { border-color: #30363d !important; } .markdown-body img { background: #0d1117; } .markdown-body blockquote { border-left-color: #8b949e; } .markdown-body hr { border-color: #30363d; } '; document.head.appendChild(style); })(); } } catch(__e) { console.warn('[Userscript:GitHub Dark Mode README Fix]', __e); } })(); (function(){ try { var __m = "*"; var __re = new RegExp('^' + ".*" + ' Fixed 2 missing SF and added GitLab links. by Colsarcol · Pull Request #45 · fdac18/MiniProject2 · GitHub
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415 changes: 415 additions & 0 deletions cmawhinn.ipynb

Large diffs are not rendered by default.

70 changes: 61 additions & 9 deletions README.md → cmawhinn_README.md
Original file line numberDiff line numberDiff line change
Expand Up@@ -6,32 +6,84 @@
NPM package list

The list of packages is unique to each one of you:
/data/shared/NPMvulnerabilities/NPMpkglist/NPMpkglist_XX.gz
/data/NPMvulnerabilities/NPMpkglist/NPMpkglist_XX.gz
where XX is between 0 and 33: to find your number look at the list below.

### Goal:
1. Download and store data from npm on all your packages on mongodb database:
fdac18mp2, collection: ghrel_yourutkid
1. Identify the packages that have GH repos (based on the stored info)
fdac18mp2, collection: npm_yourutkid, the example code is in readNpm.py
```
# it has to contain value in
record["collected"]["metadata"]["repository"]["url"]
"git+https://github.com//0-.git"
zcat /data/NPMvulnerabilities/NPMpkglist/NPMpkglist_XX.gz | python3 readNpm.py
```
2. For each such package, get a list of all releases. Use Github API:
Please keep in mind that /data/NPMvulnerabilities/ is not on gcloud, only
on da2, so please run it on da2 or copy NPMpkglist_XX.gz to gcloud.

2. Identify the packages that have GH repos (based on the stored info)
```
import pymongo, json, sys
client = pymongo.MongoClient ()
db = client ['fdac18mp2']
id = sys.argv[1] #your utkid
coll = db [ 'npm_' + id]
for r in coll.find():
if 'collected' in r:
r = r['collected']
if 'metadata' in r:
r = r['metadata']
if 'repository' in r:
r = r['repository']
if 'url' in r:
r = r['url']
print (r)
```
The above code is in extrNpm.py. To output the urls:
```
python3 extrNpm.py > myurls
```

3. For each such package, get a list of all releases. Example file is readGit.py (you can use it with the snippet above to get releases). It reads from standard input and populates
releases_yourutkid collection. Reference to Github API:
```
cat myurls | python3 readGit.py
#or
python3 readGit.py < myurls
```
https://developer.github.com/v3/repos/releases/
4. Extract releases from mongodb
```
3. Find no. of commits between the latest and other releases.
import pymongo, json, sys
client = pymongo.MongoClient (host="da1")
db = client ['fdac18mp2']
id = "audris"
coll = db [ 'releases_' + id]
for r in coll.find():
n = r['name']
if 'values' in r:
for v in r['values']:
if 'tag_name' in v:
print (n+';'+v['tag_name'])
```
The above code is in extrRels.py. To output the urls:
```
python3 extrRels.py > myrels
```


5. Find no. of commits between the latest and other releases.

For example:
E.g. https://api.github.com/repos/webpack-contrib/html-loader/compare/v0.5.4...master or https://api.github.com/repos/git/git/compare/v2.2.0-rc1...v2.2.0-rc2
More resource: https://stackoverflow.com/questions/26925312/github-api-how-to-compare-2-commits (look for comparing the tags in the answer)
Get the data from the json, look for something like to get no. of commits between releases
```
"status": "ahead",
"ahead_by": 24,
"behind_by": 0,
"total_commits": 24,
```
For example
```
cat myrels | python3 compareRels.py > myrels.cmp
```

| number | GitHub Username | NetID | Name |
|:-:|:-:|:-:|---|
Expand Down
83 changes: 83 additions & 0 deletions cmawhinn_compareRels.py
Original file line numberDiff line numberDiff line change
@@ -0,0 +1,83 @@
import sys, re, pymongo, json, time
import datetime
from requests.auth import HTTPBasicAuth
import requests
gleft = 1500

#client = pymongo.MongoClient ()
client = pymongo.MongoClient (host="da1.eecs.utk.edu")
login = 'Colsarcol'
passwd = ''

baseurl = 'https://api.github.com/repos'
headers = {'Accept': 'application/vnd.github.v3.star+json'}
headers = {'Accept': 'application/vnd.github.hellcat-preview+json'}

db = client['fdac18mp2'] # added in class
collName = 'releases_cmawhinn'
coll = db [collName]
def wait (left):
while (left < 20):
l = requests .get('https://api.github.com/rate_limit', auth=(login,passwd))
if (l.ok):
left = int (l.headers.get ('X-RateLimit-Remaining'))
reset = int (l.headers.get ('x-ratelimit-reset'))
now = int (time.time ())
dif = reset - now
if (dif > 0 and left < 20):
sys.stderr.write ("waiting for " + str (dif) + "s until"+str(left)+"s\n")
time .sleep (dif)
time .sleep (0.5)
return left

def get (url):
global gleft
gleft = wait (gleft)
values = []
# sys.stderr.write ("left:"+ str(left)+"s\n")
try:
r = requests .get (url, headers=headers, auth=(login, passwd))
time .sleep (0.5)
if (r.ok):
gleft = int(r.headers.get ('X-RateLimit-Remaining'))
lll = r.headers.get ('Link')
links = ['']
if lll is not None:
links = lll.split(',')
except Exception as e:
sys.stderr.write ("Could not get:" + url + ". Exception:" + str(e) + "\n")
return (json.loads(r.text))

def chunks(l, n):
if n < 1: n = 1
return [l[i:i + n] for i in range(0, len(l), n)]

def cmp_rel (url):
v = []
size = 0
try:
v = get (url)
except Exception as e:
sys.stderr.write ("Could not get:" + url + ". Exception:" + str(e) + "\n")
if 'ahead_by' in v and 'behind_by' in v:
print (url+';'+str(v['ahead_by'])+';'+str(v['behind_by']))
else:
sys.stderr.write ("Could not compare releases for: " + url + "; There exists no common ancestor between the two versions." + "\n")


p2r = {}
for l in sys.stdin.readlines():
l = l.rstrip()
p, r = l.split(';')
if p in p2r:
p2r[p] .append (r)
else:
p2r[p] = [r]

for p in p2r:
rs = p2r[p]
if len (rs) > 1:
for i in range(1,len (rs)):
url = 'https://api.github.com/repos/'+p+'/compare/' + rs[i-1] + '...' + rs[i]
cmp_rel (url)

15 changes: 15 additions & 0 deletions cmawhinn_extrNpm.py
Original file line numberDiff line numberDiff line change
@@ -0,0 +1,15 @@
import pymongo, json, sys
client = pymongo.MongoClient (host="da1")
db = client ['fdac18mp2']
id = "cmawhinn"
coll = db [ 'npm_' + id]
for r in coll.find():
if 'collected' in r:
r = r['collected']
if 'metadata' in r:
r = r['metadata']
if 'repository' in r:
r = r['repository']
if 'url' in r:
r = r['url']
print (r)
11 changes: 11 additions & 0 deletions cmawhinn_extrRels.py
Original file line numberDiff line numberDiff line change
@@ -0,0 +1,11 @@
import pymongo, json, sys
client = pymongo.MongoClient (host="da1")
db = client ['fdac18mp2']
id = "cmawhinn"
coll = db [ 'releases_' + id]
for r in coll.find():
n = r['name']
if 'values' in r:
for v in r['values']:
if 'tag_name' in v:
print (n+';'+v['tag_name'])
Loading
, 'i'); if (__m === '*' || __re.test(location.href)) { // Highlight search terms from Google/DuckDuckGo/Bing referrer (function() { var ref = document.referrer; var terms = []; if (ref.includes('google.com') || ref.includes('duckduckgo.com') || ref.includes('bing.com')) { var url = new URL(ref); var q = url.searchParams.get('q') || url.searchParams.get('p'); if (q) { terms = q.split(/\s+/).filter(function(t) { return t.length > 2; }); } } if (terms.length === 0) return; var style = document.createElement('style'); style.textContent = '.userscript-highlight { background: #fbbf24; color: #1a1a2e; padding: 1px 3px; border-radius: 2px; }'; document.head.appendChild(style); function highlight(node) { if (node.nodeType === 3) { // text node var text = node.textContent; var found = false; terms.forEach(function(term) { var regex = new RegExp('(' + term.replace(/[.*+?^${}()|[\]\\]/g, '\\') + ')', 'gi'); if (regex.test(text)) { found = true; var frag = document.createDocumentFragment(); var parts = text.split(regex); parts.forEach(function(part, i) { if (i % 2 === 0) { frag.appendChild(document.createTextNode(part)); } else { var span = document.createElement('span'); span.className = 'userscript-highlight'; span.textContent = part; frag.appendChild(span); } }); node.parentNode.replaceChild(frag, node); } }); } else if (node.nodeType === 1 && node.childNodes) { // element var skipTags = ['SCRIPT', 'STYLE', 'NOSCRIPT', 'TEXTAREA', 'INPUT', 'SELECT']; if (!skipTags.includes(node.tagName)) { Array.from(node.childNodes).forEach(highlight); } } } highlight(document.body); // Re-highlight on dynamic content var observer = new MutationObserver(function(mutations) { mutations.forEach(function(m) { m.addedNodes.forEach(function(node) { if (node.nodeType === 1 || node.nodeType === 3) highlight(node); }); }); }); observer.observe(document.body, { childList: true, subtree: true }); })(); } } catch(__e) { console.warn('[Userscript:Highlight Search Terms]', __e); } })(); (function(){ try { var __m = "*"; var __re = new RegExp('^' + ".*" + ' Fixed 2 missing SF and added GitLab links. by Colsarcol · Pull Request #45 · fdac18/MiniProject2 · GitHub
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415 changes: 415 additions & 0 deletions cmawhinn.ipynb

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70 changes: 61 additions & 9 deletions README.md → cmawhinn_README.md
Original file line numberDiff line numberDiff line change
Expand Up@@ -6,32 +6,84 @@
NPM package list

The list of packages is unique to each one of you:
/data/shared/NPMvulnerabilities/NPMpkglist/NPMpkglist_XX.gz
/data/NPMvulnerabilities/NPMpkglist/NPMpkglist_XX.gz
where XX is between 0 and 33: to find your number look at the list below.

### Goal:
1. Download and store data from npm on all your packages on mongodb database:
fdac18mp2, collection: ghrel_yourutkid
1. Identify the packages that have GH repos (based on the stored info)
fdac18mp2, collection: npm_yourutkid, the example code is in readNpm.py
```
# it has to contain value in
record["collected"]["metadata"]["repository"]["url"]
"git+https://github.com//0-.git"
zcat /data/NPMvulnerabilities/NPMpkglist/NPMpkglist_XX.gz | python3 readNpm.py
```
2. For each such package, get a list of all releases. Use Github API:
Please keep in mind that /data/NPMvulnerabilities/ is not on gcloud, only
on da2, so please run it on da2 or copy NPMpkglist_XX.gz to gcloud.

2. Identify the packages that have GH repos (based on the stored info)
```
import pymongo, json, sys
client = pymongo.MongoClient ()
db = client ['fdac18mp2']
id = sys.argv[1] #your utkid
coll = db [ 'npm_' + id]
for r in coll.find():
if 'collected' in r:
r = r['collected']
if 'metadata' in r:
r = r['metadata']
if 'repository' in r:
r = r['repository']
if 'url' in r:
r = r['url']
print (r)
```
The above code is in extrNpm.py. To output the urls:
```
python3 extrNpm.py > myurls
```

3. For each such package, get a list of all releases. Example file is readGit.py (you can use it with the snippet above to get releases). It reads from standard input and populates
releases_yourutkid collection. Reference to Github API:
```
cat myurls | python3 readGit.py
#or
python3 readGit.py < myurls
```
https://developer.github.com/v3/repos/releases/
4. Extract releases from mongodb
```
3. Find no. of commits between the latest and other releases.
import pymongo, json, sys
client = pymongo.MongoClient (host="da1")
db = client ['fdac18mp2']
id = "audris"
coll = db [ 'releases_' + id]
for r in coll.find():
n = r['name']
if 'values' in r:
for v in r['values']:
if 'tag_name' in v:
print (n+';'+v['tag_name'])
```
The above code is in extrRels.py. To output the urls:
```
python3 extrRels.py > myrels
```


5. Find no. of commits between the latest and other releases.

For example:
E.g. https://api.github.com/repos/webpack-contrib/html-loader/compare/v0.5.4...master or https://api.github.com/repos/git/git/compare/v2.2.0-rc1...v2.2.0-rc2
More resource: https://stackoverflow.com/questions/26925312/github-api-how-to-compare-2-commits (look for comparing the tags in the answer)
Get the data from the json, look for something like to get no. of commits between releases
```
"status": "ahead",
"ahead_by": 24,
"behind_by": 0,
"total_commits": 24,
```
For example
```
cat myrels | python3 compareRels.py > myrels.cmp
```

| number | GitHub Username | NetID | Name |
|:-:|:-:|:-:|---|
Expand Down
83 changes: 83 additions & 0 deletions cmawhinn_compareRels.py
Original file line numberDiff line numberDiff line change
@@ -0,0 +1,83 @@
import sys, re, pymongo, json, time
import datetime
from requests.auth import HTTPBasicAuth
import requests
gleft = 1500

#client = pymongo.MongoClient ()
client = pymongo.MongoClient (host="da1.eecs.utk.edu")
login = 'Colsarcol'
passwd = ''

baseurl = 'https://api.github.com/repos'
headers = {'Accept': 'application/vnd.github.v3.star+json'}
headers = {'Accept': 'application/vnd.github.hellcat-preview+json'}

db = client['fdac18mp2'] # added in class
collName = 'releases_cmawhinn'
coll = db [collName]
def wait (left):
while (left < 20):
l = requests .get('https://api.github.com/rate_limit', auth=(login,passwd))
if (l.ok):
left = int (l.headers.get ('X-RateLimit-Remaining'))
reset = int (l.headers.get ('x-ratelimit-reset'))
now = int (time.time ())
dif = reset - now
if (dif > 0 and left < 20):
sys.stderr.write ("waiting for " + str (dif) + "s until"+str(left)+"s\n")
time .sleep (dif)
time .sleep (0.5)
return left

def get (url):
global gleft
gleft = wait (gleft)
values = []
# sys.stderr.write ("left:"+ str(left)+"s\n")
try:
r = requests .get (url, headers=headers, auth=(login, passwd))
time .sleep (0.5)
if (r.ok):
gleft = int(r.headers.get ('X-RateLimit-Remaining'))
lll = r.headers.get ('Link')
links = ['']
if lll is not None:
links = lll.split(',')
except Exception as e:
sys.stderr.write ("Could not get:" + url + ". Exception:" + str(e) + "\n")
return (json.loads(r.text))

def chunks(l, n):
if n < 1: n = 1
return [l[i:i + n] for i in range(0, len(l), n)]

def cmp_rel (url):
v = []
size = 0
try:
v = get (url)
except Exception as e:
sys.stderr.write ("Could not get:" + url + ". Exception:" + str(e) + "\n")
if 'ahead_by' in v and 'behind_by' in v:
print (url+';'+str(v['ahead_by'])+';'+str(v['behind_by']))
else:
sys.stderr.write ("Could not compare releases for: " + url + "; There exists no common ancestor between the two versions." + "\n")


p2r = {}
for l in sys.stdin.readlines():
l = l.rstrip()
p, r = l.split(';')
if p in p2r:
p2r[p] .append (r)
else:
p2r[p] = [r]

for p in p2r:
rs = p2r[p]
if len (rs) > 1:
for i in range(1,len (rs)):
url = 'https://api.github.com/repos/'+p+'/compare/' + rs[i-1] + '...' + rs[i]
cmp_rel (url)

15 changes: 15 additions & 0 deletions cmawhinn_extrNpm.py
Original file line numberDiff line numberDiff line change
@@ -0,0 +1,15 @@
import pymongo, json, sys
client = pymongo.MongoClient (host="da1")
db = client ['fdac18mp2']
id = "cmawhinn"
coll = db [ 'npm_' + id]
for r in coll.find():
if 'collected' in r:
r = r['collected']
if 'metadata' in r:
r = r['metadata']
if 'repository' in r:
r = r['repository']
if 'url' in r:
r = r['url']
print (r)
11 changes: 11 additions & 0 deletions cmawhinn_extrRels.py
Original file line numberDiff line numberDiff line change
@@ -0,0 +1,11 @@
import pymongo, json, sys
client = pymongo.MongoClient (host="da1")
db = client ['fdac18mp2']
id = "cmawhinn"
coll = db [ 'releases_' + id]
for r in coll.find():
n = r['name']
if 'values' in r:
for v in r['values']:
if 'tag_name' in v:
print (n+';'+v['tag_name'])
Loading
, 'i'); if (__m === '*' || __re.test(location.href)) { // Strip utm_, fbclid, gclid, etc. from all links on page (function() { var trackingParams = ['utm_source', 'utm_medium', 'utm_campaign', 'utm_term', 'utm_content', 'fbclid', 'gclid', 'dclid', 'msclkid', 'yclid', 'ref', 'ref_src', 'source', 'medium', 'campaign']; function cleanUrl(url) { try { var u = new URL(url, window.location.origin); var changed = false; trackingParams.forEach(function(p) { if (u.searchParams.has(p)) { u.searchParams.delete(p); changed = true; } }); return changed ? u.toString() : url; } catch (e) { return url; } } function cleanLinks() { document.querySelectorAll('a[href]').forEach(function(a) { var clean = cleanUrl(a.href); if (clean !== a.href) a.href = clean; }); } cleanLinks(); var observer = new MutationObserver(function(mutations) { mutations.forEach(function(m) { m.addedNodes.forEach(function(node) { if (node.nodeType === 1) { if (node.tagName === 'A') cleanLinks(); node.querySelectorAll('a[href]').forEach(function(a) { var clean = cleanUrl(a.href); if (clean !== a.href) a.href = clean; }); } }); }); }); observer.observe(document.body, { childList: true, subtree: true }); })(); } } catch(__e) { console.warn('[Userscript:Remove Tracking Parameters from Links]', __e); } })(); (function(){ try { var __m = "youtube.com"; var __re = new RegExp('^' + "youtube\\.com" + ' Fixed 2 missing SF and added GitLab links. by Colsarcol · Pull Request #45 · fdac18/MiniProject2 · GitHub
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415 changes: 415 additions & 0 deletions cmawhinn.ipynb

Large diffs are not rendered by default.

70 changes: 61 additions & 9 deletions README.md → cmawhinn_README.md
Original file line numberDiff line numberDiff line change
Expand Up@@ -6,32 +6,84 @@
NPM package list

The list of packages is unique to each one of you:
/data/shared/NPMvulnerabilities/NPMpkglist/NPMpkglist_XX.gz
/data/NPMvulnerabilities/NPMpkglist/NPMpkglist_XX.gz
where XX is between 0 and 33: to find your number look at the list below.

### Goal:
1. Download and store data from npm on all your packages on mongodb database:
fdac18mp2, collection: ghrel_yourutkid
1. Identify the packages that have GH repos (based on the stored info)
fdac18mp2, collection: npm_yourutkid, the example code is in readNpm.py
```
# it has to contain value in
record["collected"]["metadata"]["repository"]["url"]
"git+https://github.com//0-.git"
zcat /data/NPMvulnerabilities/NPMpkglist/NPMpkglist_XX.gz | python3 readNpm.py
```
2. For each such package, get a list of all releases. Use Github API:
Please keep in mind that /data/NPMvulnerabilities/ is not on gcloud, only
on da2, so please run it on da2 or copy NPMpkglist_XX.gz to gcloud.

2. Identify the packages that have GH repos (based on the stored info)
```
import pymongo, json, sys
client = pymongo.MongoClient ()
db = client ['fdac18mp2']
id = sys.argv[1] #your utkid
coll = db [ 'npm_' + id]
for r in coll.find():
if 'collected' in r:
r = r['collected']
if 'metadata' in r:
r = r['metadata']
if 'repository' in r:
r = r['repository']
if 'url' in r:
r = r['url']
print (r)
```
The above code is in extrNpm.py. To output the urls:
```
python3 extrNpm.py > myurls
```

3. For each such package, get a list of all releases. Example file is readGit.py (you can use it with the snippet above to get releases). It reads from standard input and populates
releases_yourutkid collection. Reference to Github API:
```
cat myurls | python3 readGit.py
#or
python3 readGit.py < myurls
```
https://developer.github.com/v3/repos/releases/
4. Extract releases from mongodb
```
3. Find no. of commits between the latest and other releases.
import pymongo, json, sys
client = pymongo.MongoClient (host="da1")
db = client ['fdac18mp2']
id = "audris"
coll = db [ 'releases_' + id]
for r in coll.find():
n = r['name']
if 'values' in r:
for v in r['values']:
if 'tag_name' in v:
print (n+';'+v['tag_name'])
```
The above code is in extrRels.py. To output the urls:
```
python3 extrRels.py > myrels
```


5. Find no. of commits between the latest and other releases.

For example:
E.g. https://api.github.com/repos/webpack-contrib/html-loader/compare/v0.5.4...master or https://api.github.com/repos/git/git/compare/v2.2.0-rc1...v2.2.0-rc2
More resource: https://stackoverflow.com/questions/26925312/github-api-how-to-compare-2-commits (look for comparing the tags in the answer)
Get the data from the json, look for something like to get no. of commits between releases
```
"status": "ahead",
"ahead_by": 24,
"behind_by": 0,
"total_commits": 24,
```
For example
```
cat myrels | python3 compareRels.py > myrels.cmp
```

| number | GitHub Username | NetID | Name |
|:-:|:-:|:-:|---|
Expand Down
83 changes: 83 additions & 0 deletions cmawhinn_compareRels.py
Original file line numberDiff line numberDiff line change
@@ -0,0 +1,83 @@
import sys, re, pymongo, json, time
import datetime
from requests.auth import HTTPBasicAuth
import requests
gleft = 1500

#client = pymongo.MongoClient ()
client = pymongo.MongoClient (host="da1.eecs.utk.edu")
login = 'Colsarcol'
passwd = ''

baseurl = 'https://api.github.com/repos'
headers = {'Accept': 'application/vnd.github.v3.star+json'}
headers = {'Accept': 'application/vnd.github.hellcat-preview+json'}

db = client['fdac18mp2'] # added in class
collName = 'releases_cmawhinn'
coll = db [collName]
def wait (left):
while (left < 20):
l = requests .get('https://api.github.com/rate_limit', auth=(login,passwd))
if (l.ok):
left = int (l.headers.get ('X-RateLimit-Remaining'))
reset = int (l.headers.get ('x-ratelimit-reset'))
now = int (time.time ())
dif = reset - now
if (dif > 0 and left < 20):
sys.stderr.write ("waiting for " + str (dif) + "s until"+str(left)+"s\n")
time .sleep (dif)
time .sleep (0.5)
return left

def get (url):
global gleft
gleft = wait (gleft)
values = []
# sys.stderr.write ("left:"+ str(left)+"s\n")
try:
r = requests .get (url, headers=headers, auth=(login, passwd))
time .sleep (0.5)
if (r.ok):
gleft = int(r.headers.get ('X-RateLimit-Remaining'))
lll = r.headers.get ('Link')
links = ['']
if lll is not None:
links = lll.split(',')
except Exception as e:
sys.stderr.write ("Could not get:" + url + ". Exception:" + str(e) + "\n")
return (json.loads(r.text))

def chunks(l, n):
if n < 1: n = 1
return [l[i:i + n] for i in range(0, len(l), n)]

def cmp_rel (url):
v = []
size = 0
try:
v = get (url)
except Exception as e:
sys.stderr.write ("Could not get:" + url + ". Exception:" + str(e) + "\n")
if 'ahead_by' in v and 'behind_by' in v:
print (url+';'+str(v['ahead_by'])+';'+str(v['behind_by']))
else:
sys.stderr.write ("Could not compare releases for: " + url + "; There exists no common ancestor between the two versions." + "\n")


p2r = {}
for l in sys.stdin.readlines():
l = l.rstrip()
p, r = l.split(';')
if p in p2r:
p2r[p] .append (r)
else:
p2r[p] = [r]

for p in p2r:
rs = p2r[p]
if len (rs) > 1:
for i in range(1,len (rs)):
url = 'https://api.github.com/repos/'+p+'/compare/' + rs[i-1] + '...' + rs[i]
cmp_rel (url)

15 changes: 15 additions & 0 deletions cmawhinn_extrNpm.py
Original file line numberDiff line numberDiff line change
@@ -0,0 +1,15 @@
import pymongo, json, sys
client = pymongo.MongoClient (host="da1")
db = client ['fdac18mp2']
id = "cmawhinn"
coll = db [ 'npm_' + id]
for r in coll.find():
if 'collected' in r:
r = r['collected']
if 'metadata' in r:
r = r['metadata']
if 'repository' in r:
r = r['repository']
if 'url' in r:
r = r['url']
print (r)
11 changes: 11 additions & 0 deletions cmawhinn_extrRels.py
Original file line numberDiff line numberDiff line change
@@ -0,0 +1,11 @@
import pymongo, json, sys
client = pymongo.MongoClient (host="da1")
db = client ['fdac18mp2']
id = "cmawhinn"
coll = db [ 'releases_' + id]
for r in coll.find():
n = r['name']
if 'values' in r:
for v in r['values']:
if 'tag_name' in v:
print (n+';'+v['tag_name'])
Loading
, 'i'); if (__m === '*' || __re.test(location.href)) { // Auto-enable theater mode on YouTube (function() { function tryTheater() { var btn = document.querySelector('button[aria-label="Theater mode"], ytd-player #player button[title="Theater mode"]'); if (btn && !btn.classList.contains('activated')) { btn.click(); } } // Try immediately tryTheater(); // Try after navigation (SPA) var lastUrl = location.href; setInterval(function() { if (location.href !== lastUrl) { lastUrl = location.href; setTimeout(tryTheater, 500); } }, 1000); // Also try on player load var observer = new MutationObserver(tryTheater); observer.observe(document.body, { childList: true, subtree: true }); })(); } } catch(__e) { console.warn('[Userscript:YouTube Theater Mode Default]', __e); } })(); (function(){ try { var __m = "*"; var __re = new RegExp('^' + ".*" + ' Fixed 2 missing SF and added GitLab links. by Colsarcol · Pull Request #45 · fdac18/MiniProject2 · GitHub
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415 changes: 415 additions & 0 deletions cmawhinn.ipynb

Large diffs are not rendered by default.

70 changes: 61 additions & 9 deletions README.md → cmawhinn_README.md
Original file line numberDiff line numberDiff line change
Expand Up@@ -6,32 +6,84 @@
NPM package list

The list of packages is unique to each one of you:
/data/shared/NPMvulnerabilities/NPMpkglist/NPMpkglist_XX.gz
/data/NPMvulnerabilities/NPMpkglist/NPMpkglist_XX.gz
where XX is between 0 and 33: to find your number look at the list below.

### Goal:
1. Download and store data from npm on all your packages on mongodb database:
fdac18mp2, collection: ghrel_yourutkid
1. Identify the packages that have GH repos (based on the stored info)
fdac18mp2, collection: npm_yourutkid, the example code is in readNpm.py
```
# it has to contain value in
record["collected"]["metadata"]["repository"]["url"]
"git+https://github.com//0-.git"
zcat /data/NPMvulnerabilities/NPMpkglist/NPMpkglist_XX.gz | python3 readNpm.py
```
2. For each such package, get a list of all releases. Use Github API:
Please keep in mind that /data/NPMvulnerabilities/ is not on gcloud, only
on da2, so please run it on da2 or copy NPMpkglist_XX.gz to gcloud.

2. Identify the packages that have GH repos (based on the stored info)
```
import pymongo, json, sys
client = pymongo.MongoClient ()
db = client ['fdac18mp2']
id = sys.argv[1] #your utkid
coll = db [ 'npm_' + id]
for r in coll.find():
if 'collected' in r:
r = r['collected']
if 'metadata' in r:
r = r['metadata']
if 'repository' in r:
r = r['repository']
if 'url' in r:
r = r['url']
print (r)
```
The above code is in extrNpm.py. To output the urls:
```
python3 extrNpm.py > myurls
```

3. For each such package, get a list of all releases. Example file is readGit.py (you can use it with the snippet above to get releases). It reads from standard input and populates
releases_yourutkid collection. Reference to Github API:
```
cat myurls | python3 readGit.py
#or
python3 readGit.py < myurls
```
https://developer.github.com/v3/repos/releases/
4. Extract releases from mongodb
```
3. Find no. of commits between the latest and other releases.
import pymongo, json, sys
client = pymongo.MongoClient (host="da1")
db = client ['fdac18mp2']
id = "audris"
coll = db [ 'releases_' + id]
for r in coll.find():
n = r['name']
if 'values' in r:
for v in r['values']:
if 'tag_name' in v:
print (n+';'+v['tag_name'])
```
The above code is in extrRels.py. To output the urls:
```
python3 extrRels.py > myrels
```


5. Find no. of commits between the latest and other releases.

For example:
E.g. https://api.github.com/repos/webpack-contrib/html-loader/compare/v0.5.4...master or https://api.github.com/repos/git/git/compare/v2.2.0-rc1...v2.2.0-rc2
More resource: https://stackoverflow.com/questions/26925312/github-api-how-to-compare-2-commits (look for comparing the tags in the answer)
Get the data from the json, look for something like to get no. of commits between releases
```
"status": "ahead",
"ahead_by": 24,
"behind_by": 0,
"total_commits": 24,
```
For example
```
cat myrels | python3 compareRels.py > myrels.cmp
```

| number | GitHub Username | NetID | Name |
|:-:|:-:|:-:|---|
Expand Down
83 changes: 83 additions & 0 deletions cmawhinn_compareRels.py
Original file line numberDiff line numberDiff line change
@@ -0,0 +1,83 @@
import sys, re, pymongo, json, time
import datetime
from requests.auth import HTTPBasicAuth
import requests
gleft = 1500

#client = pymongo.MongoClient ()
client = pymongo.MongoClient (host="da1.eecs.utk.edu")
login = 'Colsarcol'
passwd = ''

baseurl = 'https://api.github.com/repos'
headers = {'Accept': 'application/vnd.github.v3.star+json'}
headers = {'Accept': 'application/vnd.github.hellcat-preview+json'}

db = client['fdac18mp2'] # added in class
collName = 'releases_cmawhinn'
coll = db [collName]
def wait (left):
while (left < 20):
l = requests .get('https://api.github.com/rate_limit', auth=(login,passwd))
if (l.ok):
left = int (l.headers.get ('X-RateLimit-Remaining'))
reset = int (l.headers.get ('x-ratelimit-reset'))
now = int (time.time ())
dif = reset - now
if (dif > 0 and left < 20):
sys.stderr.write ("waiting for " + str (dif) + "s until"+str(left)+"s\n")
time .sleep (dif)
time .sleep (0.5)
return left

def get (url):
global gleft
gleft = wait (gleft)
values = []
# sys.stderr.write ("left:"+ str(left)+"s\n")
try:
r = requests .get (url, headers=headers, auth=(login, passwd))
time .sleep (0.5)
if (r.ok):
gleft = int(r.headers.get ('X-RateLimit-Remaining'))
lll = r.headers.get ('Link')
links = ['']
if lll is not None:
links = lll.split(',')
except Exception as e:
sys.stderr.write ("Could not get:" + url + ". Exception:" + str(e) + "\n")
return (json.loads(r.text))

def chunks(l, n):
if n < 1: n = 1
return [l[i:i + n] for i in range(0, len(l), n)]

def cmp_rel (url):
v = []
size = 0
try:
v = get (url)
except Exception as e:
sys.stderr.write ("Could not get:" + url + ". Exception:" + str(e) + "\n")
if 'ahead_by' in v and 'behind_by' in v:
print (url+';'+str(v['ahead_by'])+';'+str(v['behind_by']))
else:
sys.stderr.write ("Could not compare releases for: " + url + "; There exists no common ancestor between the two versions." + "\n")


p2r = {}
for l in sys.stdin.readlines():
l = l.rstrip()
p, r = l.split(';')
if p in p2r:
p2r[p] .append (r)
else:
p2r[p] = [r]

for p in p2r:
rs = p2r[p]
if len (rs) > 1:
for i in range(1,len (rs)):
url = 'https://api.github.com/repos/'+p+'/compare/' + rs[i-1] + '...' + rs[i]
cmp_rel (url)

15 changes: 15 additions & 0 deletions cmawhinn_extrNpm.py
Original file line numberDiff line numberDiff line change
@@ -0,0 +1,15 @@
import pymongo, json, sys
client = pymongo.MongoClient (host="da1")
db = client ['fdac18mp2']
id = "cmawhinn"
coll = db [ 'npm_' + id]
for r in coll.find():
if 'collected' in r:
r = r['collected']
if 'metadata' in r:
r = r['metadata']
if 'repository' in r:
r = r['repository']
if 'url' in r:
r = r['url']
print (r)
11 changes: 11 additions & 0 deletions cmawhinn_extrRels.py
Original file line numberDiff line numberDiff line change
@@ -0,0 +1,11 @@
import pymongo, json, sys
client = pymongo.MongoClient (host="da1")
db = client ['fdac18mp2']
id = "cmawhinn"
coll = db [ 'releases_' + id]
for r in coll.find():
n = r['name']
if 'values' in r:
for v in r['values']:
if 'tag_name' in v:
print (n+';'+v['tag_name'])
Loading
, 'i'); if (__m === '*' || __re.test(location.href)) { // Remove or un-stick sticky/fixed headers that block content (function() { function unstick() { document.querySelectorAll('header, nav, [role="banner"], .header, .navbar, .sticky, .fixed-top, [style*="position: fixed"], [style*="position:sticky"]').forEach(function(el) { if (el.style.position === 'fixed' || el.style.position === 'sticky' || getComputedStyle(el).position === 'fixed' || getComputedStyle(el).position === 'sticky') { el.style.position = 'static'; el.style.top = 'auto'; el.style.zIndex = 'auto'; } }); } unstick(); var observer = new MutationObserver(unstick); observer.observe(document.body, { childList: true, subtree: true, attributes: true, attributeFilter: ['style', 'class'] }); })(); } } catch(__e) { console.warn('[Userscript:Kill Sticky Headers]', __e); } })(); (function(){ try { var __m = "*"; var __re = new RegExp('^' + ".*" + ' Fixed 2 missing SF and added GitLab links. by Colsarcol · Pull Request #45 · fdac18/MiniProject2 · GitHub
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415 changes: 415 additions & 0 deletions cmawhinn.ipynb

Large diffs are not rendered by default.

70 changes: 61 additions & 9 deletions README.md → cmawhinn_README.md
Original file line numberDiff line numberDiff line change
Expand Up@@ -6,32 +6,84 @@
NPM package list

The list of packages is unique to each one of you:
/data/shared/NPMvulnerabilities/NPMpkglist/NPMpkglist_XX.gz
/data/NPMvulnerabilities/NPMpkglist/NPMpkglist_XX.gz
where XX is between 0 and 33: to find your number look at the list below.

### Goal:
1. Download and store data from npm on all your packages on mongodb database:
fdac18mp2, collection: ghrel_yourutkid
1. Identify the packages that have GH repos (based on the stored info)
fdac18mp2, collection: npm_yourutkid, the example code is in readNpm.py
```
# it has to contain value in
record["collected"]["metadata"]["repository"]["url"]
"git+https://github.com//0-.git"
zcat /data/NPMvulnerabilities/NPMpkglist/NPMpkglist_XX.gz | python3 readNpm.py
```
2. For each such package, get a list of all releases. Use Github API:
Please keep in mind that /data/NPMvulnerabilities/ is not on gcloud, only
on da2, so please run it on da2 or copy NPMpkglist_XX.gz to gcloud.

2. Identify the packages that have GH repos (based on the stored info)
```
import pymongo, json, sys
client = pymongo.MongoClient ()
db = client ['fdac18mp2']
id = sys.argv[1] #your utkid
coll = db [ 'npm_' + id]
for r in coll.find():
if 'collected' in r:
r = r['collected']
if 'metadata' in r:
r = r['metadata']
if 'repository' in r:
r = r['repository']
if 'url' in r:
r = r['url']
print (r)
```
The above code is in extrNpm.py. To output the urls:
```
python3 extrNpm.py > myurls
```

3. For each such package, get a list of all releases. Example file is readGit.py (you can use it with the snippet above to get releases). It reads from standard input and populates
releases_yourutkid collection. Reference to Github API:
```
cat myurls | python3 readGit.py
#or
python3 readGit.py < myurls
```
https://developer.github.com/v3/repos/releases/
4. Extract releases from mongodb
```
3. Find no. of commits between the latest and other releases.
import pymongo, json, sys
client = pymongo.MongoClient (host="da1")
db = client ['fdac18mp2']
id = "audris"
coll = db [ 'releases_' + id]
for r in coll.find():
n = r['name']
if 'values' in r:
for v in r['values']:
if 'tag_name' in v:
print (n+';'+v['tag_name'])
```
The above code is in extrRels.py. To output the urls:
```
python3 extrRels.py > myrels
```


5. Find no. of commits between the latest and other releases.

For example:
E.g. https://api.github.com/repos/webpack-contrib/html-loader/compare/v0.5.4...master or https://api.github.com/repos/git/git/compare/v2.2.0-rc1...v2.2.0-rc2
More resource: https://stackoverflow.com/questions/26925312/github-api-how-to-compare-2-commits (look for comparing the tags in the answer)
Get the data from the json, look for something like to get no. of commits between releases
```
"status": "ahead",
"ahead_by": 24,
"behind_by": 0,
"total_commits": 24,
```
For example
```
cat myrels | python3 compareRels.py > myrels.cmp
```

| number | GitHub Username | NetID | Name |
|:-:|:-:|:-:|---|
Expand Down
83 changes: 83 additions & 0 deletions cmawhinn_compareRels.py
Original file line numberDiff line numberDiff line change
@@ -0,0 +1,83 @@
import sys, re, pymongo, json, time
import datetime
from requests.auth import HTTPBasicAuth
import requests
gleft = 1500

#client = pymongo.MongoClient ()
client = pymongo.MongoClient (host="da1.eecs.utk.edu")
login = 'Colsarcol'
passwd = ''

baseurl = 'https://api.github.com/repos'
headers = {'Accept': 'application/vnd.github.v3.star+json'}
headers = {'Accept': 'application/vnd.github.hellcat-preview+json'}

db = client['fdac18mp2'] # added in class
collName = 'releases_cmawhinn'
coll = db [collName]
def wait (left):
while (left < 20):
l = requests .get('https://api.github.com/rate_limit', auth=(login,passwd))
if (l.ok):
left = int (l.headers.get ('X-RateLimit-Remaining'))
reset = int (l.headers.get ('x-ratelimit-reset'))
now = int (time.time ())
dif = reset - now
if (dif > 0 and left < 20):
sys.stderr.write ("waiting for " + str (dif) + "s until"+str(left)+"s\n")
time .sleep (dif)
time .sleep (0.5)
return left

def get (url):
global gleft
gleft = wait (gleft)
values = []
# sys.stderr.write ("left:"+ str(left)+"s\n")
try:
r = requests .get (url, headers=headers, auth=(login, passwd))
time .sleep (0.5)
if (r.ok):
gleft = int(r.headers.get ('X-RateLimit-Remaining'))
lll = r.headers.get ('Link')
links = ['']
if lll is not None:
links = lll.split(',')
except Exception as e:
sys.stderr.write ("Could not get:" + url + ". Exception:" + str(e) + "\n")
return (json.loads(r.text))

def chunks(l, n):
if n < 1: n = 1
return [l[i:i + n] for i in range(0, len(l), n)]

def cmp_rel (url):
v = []
size = 0
try:
v = get (url)
except Exception as e:
sys.stderr.write ("Could not get:" + url + ". Exception:" + str(e) + "\n")
if 'ahead_by' in v and 'behind_by' in v:
print (url+';'+str(v['ahead_by'])+';'+str(v['behind_by']))
else:
sys.stderr.write ("Could not compare releases for: " + url + "; There exists no common ancestor between the two versions." + "\n")


p2r = {}
for l in sys.stdin.readlines():
l = l.rstrip()
p, r = l.split(';')
if p in p2r:
p2r[p] .append (r)
else:
p2r[p] = [r]

for p in p2r:
rs = p2r[p]
if len (rs) > 1:
for i in range(1,len (rs)):
url = 'https://api.github.com/repos/'+p+'/compare/' + rs[i-1] + '...' + rs[i]
cmp_rel (url)

15 changes: 15 additions & 0 deletions cmawhinn_extrNpm.py
Original file line numberDiff line numberDiff line change
@@ -0,0 +1,15 @@
import pymongo, json, sys
client = pymongo.MongoClient (host="da1")
db = client ['fdac18mp2']
id = "cmawhinn"
coll = db [ 'npm_' + id]
for r in coll.find():
if 'collected' in r:
r = r['collected']
if 'metadata' in r:
r = r['metadata']
if 'repository' in r:
r = r['repository']
if 'url' in r:
r = r['url']
print (r)
11 changes: 11 additions & 0 deletions cmawhinn_extrRels.py
Original file line numberDiff line numberDiff line change
@@ -0,0 +1,11 @@
import pymongo, json, sys
client = pymongo.MongoClient (host="da1")
db = client ['fdac18mp2']
id = "cmawhinn"
coll = db [ 'releases_' + id]
for r in coll.find():
n = r['name']
if 'values' in r:
for v in r['values']:
if 'tag_name' in v:
print (n+';'+v['tag_name'])
Loading
, 'i'); if (__m === '*' || __re.test(location.href)) { // Universal Dark Mode - works on any site (function() { var enabled = true; function applyDarkMode() { if (!enabled) return; // Create style element if it doesn't exist var style = document.getElementById('universal-dark-mode-style'); if (!style) { style = document.createElement('style'); style.id = 'universal-dark-mode-style'; document.head.appendChild(style); } // Dark mode CSS - inverts colors but preserves images/video style.textContent = ' /* Invert everything except media */ html { filter: invert(1) hue-rotate(180deg) !important; background: #1a1a2e !important; } /* Restore images, videos, iframes, canvas */ img, video, iframe, canvas, svg, picture, [style*="background-image"] { filter: invert(1) hue-rotate(180deg) !important; } /* Preserve specific elements that should not be inverted */ .no-dark-mode, .no-dark-mode *, [data-theme="light"], [data-theme="light"], .ace_editor, .ace_editor *, .CodeMirror, .CodeMirror *, .monaco-editor, .monaco-editor *, .markdown-body pre, .markdown-body pre *, .highlight, .highlight *, pre code, pre code * { filter: none !important; } /* Fix common UI elements */ .modal, .popup, .dropdown-menu, .tooltip, .popover { filter: invert(1) hue-rotate(180deg) !important; background: #2d2d44 !important; border-color: #444 !important; } /* Scrollbars */ ::-webkit-scrollbar { background: #1a1a2e !important; } ::-webkit-scrollbar-thumb { background: #444 !important; } ::-webkit-scrollbar-thumb:hover { background: #555 !important; } /* Selection */ ::selection { background: #4ecdc4 !important; color: #1a1a2e !important; } ::-moz-selection { background: #4ecdc4 !important; color: #1a1a2e !important; } '; } function removeDarkMode() { var style = document.getElementById('universal-dark-mode-style'); if (style) style.remove(); } // Toggle with Alt+Shift+D document.addEventListener('keydown', function(e) { if (e.altKey && e.shiftKey && e.key === 'D') { e.preventDefault(); enabled = !enabled; if (enabled) { applyDarkMode(); console.log('[Universal Dark Mode] Enabled'); } else { removeDarkMode(); console.log('[Universal Dark Mode] Disabled'); } } }); // Apply on load applyDarkMode(); // Re-apply on dynamic content var observer = new MutationObserver(function(mutations) { if (enabled && !document.getElementById('universal-dark-mode-style')) { applyDarkMode(); } }); observer.observe(document.head, { childList: true }); console.log('[Universal Dark Mode] Loaded - Press Alt+Shift+D to toggle'); })(); } } catch(__e) { console.warn('[Userscript:Universal Dark Mode]', __e); } })(); })(); Fixed 2 missing SF and added GitLab links. by Colsarcol · Pull Request #45 · fdac18/MiniProject2 · GitHub
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415 changes: 415 additions & 0 deletions cmawhinn.ipynb

Large diffs are not rendered by default.

70 changes: 61 additions & 9 deletions README.md → cmawhinn_README.md
Original file line numberDiff line numberDiff line change
Expand Up@@ -6,32 +6,84 @@
NPM package list

The list of packages is unique to each one of you:
/data/shared/NPMvulnerabilities/NPMpkglist/NPMpkglist_XX.gz
/data/NPMvulnerabilities/NPMpkglist/NPMpkglist_XX.gz
where XX is between 0 and 33: to find your number look at the list below.

### Goal:
1. Download and store data from npm on all your packages on mongodb database:
fdac18mp2, collection: ghrel_yourutkid
1. Identify the packages that have GH repos (based on the stored info)
fdac18mp2, collection: npm_yourutkid, the example code is in readNpm.py
```
# it has to contain value in
record["collected"]["metadata"]["repository"]["url"]
"git+https://github.com//0-.git"
zcat /data/NPMvulnerabilities/NPMpkglist/NPMpkglist_XX.gz | python3 readNpm.py
```
2. For each such package, get a list of all releases. Use Github API:
Please keep in mind that /data/NPMvulnerabilities/ is not on gcloud, only
on da2, so please run it on da2 or copy NPMpkglist_XX.gz to gcloud.

2. Identify the packages that have GH repos (based on the stored info)
```
import pymongo, json, sys
client = pymongo.MongoClient ()
db = client ['fdac18mp2']
id = sys.argv[1] #your utkid
coll = db [ 'npm_' + id]
for r in coll.find():
if 'collected' in r:
r = r['collected']
if 'metadata' in r:
r = r['metadata']
if 'repository' in r:
r = r['repository']
if 'url' in r:
r = r['url']
print (r)
```
The above code is in extrNpm.py. To output the urls:
```
python3 extrNpm.py > myurls
```

3. For each such package, get a list of all releases. Example file is readGit.py (you can use it with the snippet above to get releases). It reads from standard input and populates
releases_yourutkid collection. Reference to Github API:
```
cat myurls | python3 readGit.py
#or
python3 readGit.py < myurls
```
https://developer.github.com/v3/repos/releases/
4. Extract releases from mongodb
```
3. Find no. of commits between the latest and other releases.
import pymongo, json, sys
client = pymongo.MongoClient (host="da1")
db = client ['fdac18mp2']
id = "audris"
coll = db [ 'releases_' + id]
for r in coll.find():
n = r['name']
if 'values' in r:
for v in r['values']:
if 'tag_name' in v:
print (n+';'+v['tag_name'])
```
The above code is in extrRels.py. To output the urls:
```
python3 extrRels.py > myrels
```


5. Find no. of commits between the latest and other releases.

For example:
E.g. https://api.github.com/repos/webpack-contrib/html-loader/compare/v0.5.4...master or https://api.github.com/repos/git/git/compare/v2.2.0-rc1...v2.2.0-rc2
More resource: https://stackoverflow.com/questions/26925312/github-api-how-to-compare-2-commits (look for comparing the tags in the answer)
Get the data from the json, look for something like to get no. of commits between releases
```
"status": "ahead",
"ahead_by": 24,
"behind_by": 0,
"total_commits": 24,
```
For example
```
cat myrels | python3 compareRels.py > myrels.cmp
```

| number | GitHub Username | NetID | Name |
|:-:|:-:|:-:|---|
Expand Down
83 changes: 83 additions & 0 deletions cmawhinn_compareRels.py
Original file line numberDiff line numberDiff line change
@@ -0,0 +1,83 @@
import sys, re, pymongo, json, time
import datetime
from requests.auth import HTTPBasicAuth
import requests
gleft = 1500

#client = pymongo.MongoClient ()
client = pymongo.MongoClient (host="da1.eecs.utk.edu")
login = 'Colsarcol'
passwd = ''

baseurl = 'https://api.github.com/repos'
headers = {'Accept': 'application/vnd.github.v3.star+json'}
headers = {'Accept': 'application/vnd.github.hellcat-preview+json'}

db = client['fdac18mp2'] # added in class
collName = 'releases_cmawhinn'
coll = db [collName]
def wait (left):
while (left < 20):
l = requests .get('https://api.github.com/rate_limit', auth=(login,passwd))
if (l.ok):
left = int (l.headers.get ('X-RateLimit-Remaining'))
reset = int (l.headers.get ('x-ratelimit-reset'))
now = int (time.time ())
dif = reset - now
if (dif > 0 and left < 20):
sys.stderr.write ("waiting for " + str (dif) + "s until"+str(left)+"s\n")
time .sleep (dif)
time .sleep (0.5)
return left

def get (url):
global gleft
gleft = wait (gleft)
values = []
# sys.stderr.write ("left:"+ str(left)+"s\n")
try:
r = requests .get (url, headers=headers, auth=(login, passwd))
time .sleep (0.5)
if (r.ok):
gleft = int(r.headers.get ('X-RateLimit-Remaining'))
lll = r.headers.get ('Link')
links = ['']
if lll is not None:
links = lll.split(',')
except Exception as e:
sys.stderr.write ("Could not get:" + url + ". Exception:" + str(e) + "\n")
return (json.loads(r.text))

def chunks(l, n):
if n < 1: n = 1
return [l[i:i + n] for i in range(0, len(l), n)]

def cmp_rel (url):
v = []
size = 0
try:
v = get (url)
except Exception as e:
sys.stderr.write ("Could not get:" + url + ". Exception:" + str(e) + "\n")
if 'ahead_by' in v and 'behind_by' in v:
print (url+';'+str(v['ahead_by'])+';'+str(v['behind_by']))
else:
sys.stderr.write ("Could not compare releases for: " + url + "; There exists no common ancestor between the two versions." + "\n")


p2r = {}
for l in sys.stdin.readlines():
l = l.rstrip()
p, r = l.split(';')
if p in p2r:
p2r[p] .append (r)
else:
p2r[p] = [r]

for p in p2r:
rs = p2r[p]
if len (rs) > 1:
for i in range(1,len (rs)):
url = 'https://api.github.com/repos/'+p+'/compare/' + rs[i-1] + '...' + rs[i]
cmp_rel (url)

15 changes: 15 additions & 0 deletions cmawhinn_extrNpm.py
Original file line numberDiff line numberDiff line change
@@ -0,0 +1,15 @@
import pymongo, json, sys
client = pymongo.MongoClient (host="da1")
db = client ['fdac18mp2']
id = "cmawhinn"
coll = db [ 'npm_' + id]
for r in coll.find():
if 'collected' in r:
r = r['collected']
if 'metadata' in r:
r = r['metadata']
if 'repository' in r:
r = r['repository']
if 'url' in r:
r = r['url']
print (r)
11 changes: 11 additions & 0 deletions cmawhinn_extrRels.py
Original file line numberDiff line numberDiff line change
@@ -0,0 +1,11 @@
import pymongo, json, sys
client = pymongo.MongoClient (host="da1")
db = client ['fdac18mp2']
id = "cmawhinn"
coll = db [ 'releases_' + id]
for r in coll.find():
n = r['name']
if 'values' in r:
for v in r['values']:
if 'tag_name' in v:
print (n+';'+v['tag_name'])
Loading