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1. novonordisk-research/BEE-BOnovonordisk-research/BEE-BOPublic

   Batched Energy-Entropy acquisition for Bayesian Optimization (NeurIPS 2024)

   Python 11 1

2. signalp-6.0signalp-6.0Public

   Multi-class signal peptide prediction and structure decoding model.

   Python 120 20

3. graph-part/graph-partgraph-part/graph-partPublic

   GraphPart, a data partitioning method for ML on biological sequences

   Jupyter Notebook 36 6

4. frederikkemarin/BENDfrederikkemarin/BENDPublic

   Benchmarking DNA Language Models on Biologically Meaningful Tasks

   Python 133 22

5. alphafold-peptide-receptorsalphafold-peptide-receptorsPublic

   Identifying peptide-receptor interactions using AlphaFold-Multimer

   Jupyter Notebook 29 7

6. SecretoGenSecretoGenPublic

   A conditional generative model for signal peptide design and efficiency prediction

   Python 12 3