Workflow runs · gersteinlab/ScRNA_processing · GitHub

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39 workflow runs

39 workflow runs

Support ARC-v1 Multiome + r3/dotlane FASTQ conventions for SCORCH PFC… Build and Push CellRanger Docker Image #8: Commit 992a103 pushed by majid-farhadloo

4m 6s dev

4m 6s

Support ARC-v1 Multiome + r3/dotlane FASTQ conventions for SCORCH PFC… Build and Push Pegasus Docker Image #26: Commit 992a103 pushed by majid-farhadloo

2m 15s dev

2m 15s

Switch Azimuth base image to bioconductor_docker:RELEASE_3_18 Build and Push Azimuth Docker Image #4: Commit e35159d pushed by majid-farhadloo

39m 8s dev

39m 8s

Build and Push Azimuth Docker Image Build and Push Azimuth Docker Image #3: Manually run by majid-farhadloo

1h 23m 23s dev

1h 23m 23s

Fix Azimuth Docker build: install Bioconductor deps before satijalab/… Build and Push Azimuth Docker Image #2: Commit 57abf86 pushed by majid-farhadloo

43m 41s main

43m 41s

Add downstream Azimuth WDL workflow Build and Push Azimuth Docker Image #1: Commit 4617b9a pushed by majid-farhadloo

28m 4s main

28m 4s

Add downstream Azimuth WDL workflow Build and Push Pegasus Docker Image #25: Commit 4617b9a pushed by majid-farhadloo

3m 4s main

3m 4s

Remove cellbender_task.py COPY from Pegasus Dockerfile (file deleted) Build and Push Pegasus Docker Image #24: Commit c5d5dbb pushed by majid-farhadloo

2m 22s main

2m 22s

Inline cellbender CLI in WDL; remove cellbender_task.py (not in publi… Build and Push Pegasus Docker Image #23: Commit 5317fd5 pushed by majid-farhadloo

18s main

18s

Fix file delocalization: use glob() for File outputs in CellRanger/Ce… Build and Push Pegasus Docker Image #22: Commit d47ded4 pushed by majid-farhadloo

2m 47s main

2m 47s

Fix file delocalization: use glob() for File outputs in CellRanger/Ce… Build and Push CellRanger Docker Image #7: Commit d47ded4 pushed by majid-farhadloo

1m 35s main

1m 35s

Auto-detect FASTQ sample prefix from filenames as fallback Build and Push Pegasus Docker Image #21: Commit abbd53e pushed by majid-farhadloo

3m 1s main

3m 1s

Auto-detect FASTQ sample prefix from filenames as fallback Build and Push CellRanger Docker Image #6: Commit abbd53e pushed by majid-farhadloo

1m 28s main

1m 28s

Add fastq_sample_prefix to decouple --sample from --id in CellRanger;… Build and Push Pegasus Docker Image #20: Commit 5ef3480 pushed by majid-farhadloo

1m 41s main

1m 41s

Add fastq_sample_prefix to decouple --sample from --id in CellRanger;… Build and Push CellRanger Docker Image #5: Commit 5ef3480 pushed by majid-farhadloo

1m 20s main

1m 20s

Add --create-bam false for CellRanger 10.0 compatibility Build and Push CellRanger Docker Image #4: Commit 94a4df4 pushed by majid-farhadloo

1m 34s main

1m 34s

Add --create-bam false for CellRanger 10.0 compatibility Build and Push Pegasus Docker Image #19: Commit 94a4df4 pushed by majid-farhadloo

2m 38s main

2m 38s

Fix CellRanger 10.0 --include-introns flag: pass explicit true/false … Build and Push CellRanger Docker Image #3: Commit 3a85aac pushed by majid-farhadloo

3m 50s main

3m 50s

Fix CellRanger 10.0 --include-introns flag: pass explicit true/false … Build and Push Pegasus Docker Image #18: Commit 3a85aac pushed by majid-farhadloo

2m 23s main

2m 23s

Fix Harmony import: use harmony-pytorch instead of harmonypy; free da… Build and Push Pegasus Docker Image #17: Commit 709e6c9 pushed by majid-farhadloo

8m 6s main

8m 6s

Fix audit findings: .get_shape() deprecation, file handle leak, UMAP … Build and Push Pegasus Docker Image #16: Commit 50554e6 pushed by majid-farhadloo

44s main

44s

Add pip list diagnostic to Dockerfile build Build and Push Pegasus Docker Image #15: Commit 7eac53a pushed by majid-farhadloo

42s main

42s

Update pegasus_docker tag to sha-b2c697b Build and Push Pegasus Docker Image #14: Commit 8d764e4 pushed by majid-farhadloo

38s main

38s

Fix broken build verification: pkg_resources has no __version__ attr Build and Push Pegasus Docker Image #13: Commit e79d377 pushed by majid-farhadloo

2m 53s main

2m 53s

Debug pkg_resources: add diagnostics, disable build cache Build and Push Pegasus Docker Image #12: Commit 1c12cde pushed by majid-farhadloo

1m 57s main

1m 57s