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@gitter-lab

Gitter Lab

Computational biology research group at UW-Madison and the Morgridge Institute

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  1. nn4dms nn4dmsPublic

    Neural networks for deep mutational scanning data

    Jupyter Notebook 74 17

  2. metl metlPublic

    Mutational Effect Transfer Learning (METL) framework for pretraining and finetuning biophysics-informed protein language models

    Python 64 10

  3. metl-sim metl-simPublic

    High-throughput framework for running molecular simulations for METL

    Python 22 6

  4. LPWC LPWCPublic

    Lag Penalized Weighted Correlation for Time Series Clustering

    R 21 3

  5. metl-pretrained metl-pretrainedPublic

    Pretrained METL models with minimal dependencies

    Python 16 4

  6. ml4bio ml4bioPublic

    A graphical interface for sklearn classification to introduce machine learning to biologists

    Python 14 3

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