Pinned Loading

1. intronICintronICPublic

   Retrieve annotated intron sequences from an annotated genome and classify them as minor (U12-type) or major (U2-type) using a support vector machine model.

   Python 9 1

2. jgi-queryjgi-queryPublic

   A simple command-line tool to download data from Joint Genome Institute databases

   Python 51 17

3. cdseqcdseqPublic

   Extract coding sequence(s) from a genome and annotation file

   Python 1

4. palignpalignPublic

   Parallelized sequence alignment using BLAST or DIAMOND

   Python 2

5. reciprologsreciprologsPublic

   Find reciprocal best hits (DIAMOND or BLAST) between two (or more!) sets of sequences.

   Python 14 5

6. fasterq_dumpfasterq_dumpPublic

   A (faster) wrapper for NCBI's fastq-dump with some convenience functions

   Python 4