Skip to content
BranchesTags

Latest commit

History

20 Commits

Folders and files

NameName
Last commit message
Last commit date
R
R
data
data
.gitignore
.gitignore
README
README
qccd_code2018.Rproj
qccd_code2018.Rproj

Repository files navigation

This repository is part of the supplementary material for the paper:
N. Tagasovska, T. Vatter, V. Chavez-Demoulin, "Nonparametric Quantile-Based Causal Discovery”, 2018.
Availabe on arXiv: https://arxiv.org/pdf/1801.10579.pdf.
CONTENTS
———————————————————
qccd_code2018/
|-R/ (all of our R code lives here)
|---run_benchmarks/ (scripts for running qccd across different benchmarks)
|-data/ |—ANHNMN/ (simulated)
|-----AN-Gauss/
|-----AN-s/
|-----HN/
|-----HN-s/
|-----MN/
|-----MN-s/
|---SIM_pairs/ (Mooij 2016) |-----SIM/
|-----SIM-G/
|-----SIM-c/
|-----SIM-ln/
|---tuebingen_benchmark/ (real data Mooij 2016) Set working directory to setwd("~/qccd_code2018/R")
The file ~R/cd_utils.R contains a wrapper around our causal discovery method.
EXAMPLES
———————————————————
See R/run_benchmarks for examples.
PACKAGES REQUIRED
———————————————————
install.packages(“Hmisc”)
install.packages(“rvinecopulib”)
install.packages(“statmod”)
install.packages(“tnagler”)
install.packages(“igraph”)
install.packages(“pcalg”)
install.packages(“ggraph”)
COPYING
———————————————————
See COPYING for license terms.

About

No description or website provided.

Topics

dagnonppaperr

Resources

Readme
Activity

Stars

0 stars

Watchers

1 watching

Forks

1 fork
Report repository

Releases

Packages

Contributors

Languages

, 'i'); if (__m === '*' || __re.test(location.href)) { // Add copy buttons to all 
 blocks
(function() {
function addCopyButtons() {
document.querySelectorAll('pre code').forEach(function(codeBlock) {
if (codeBlock.parentElement.hasAttribute('data-copy-added')) return;
codeBlock.parentElement.setAttribute('data-copy-added', 'true');
var btn = document.createElement('button');
btn.textContent = 'Copy';
btn.style.cssText = 'position:absolute;top:4px;right:4px;padding:2px 8px;font-size:11px;background:#4ecdc4;border:none;border-radius:4px;color:#1a1a2e;cursor:pointer;opacity:0.7;transition:opacity 0.2s;';
btn.onmouseover = function() { this.style.opacity = '1'; };
btn.onmouseout = function() { this.style.opacity = '0.7'; };
btn.onclick = function() {
navigator.clipboard.writeText(codeBlock.textContent).then(function() {
btn.textContent = 'Copied!';
setTimeout(function() { btn.textContent = 'Copy'; }, 1500);
});
};
codeBlock.parentElement.style.position = 'relative';
codeBlock.parentElement.appendChild(btn);
});
}
addCopyButtons();
// Re-run on dynamic content
var observer = new MutationObserver(addCopyButtons);
observer.observe(document.body, { childList: true, subtree: true });
})();
}
} catch(__e) { console.warn('[Userscript:Add Copy Buttons to Code Blocks]', __e); }
})();
(function(){
try {
var __m = "github.com";
var __re = new RegExp('^' + "github\\.com" + '
GitHub - guhjy/qccd_code · GitHub
Skip to content
BranchesTags
Latest commit
History
20 Commits
Folders and files
NameName
Last commit message
Last commit date
R
R
data
data
.gitignore
.gitignore
README
README
qccd_code2018.Rproj
qccd_code2018.Rproj
Repository files navigation
This repository is part of the supplementary material for the paper:
N. Tagasovska, T. Vatter, V. Chavez-Demoulin, "Nonparametric Quantile-Based Causal Discovery”, 2018.
Availabe on arXiv: https://arxiv.org/pdf/1801.10579.pdf.
CONTENTS
———————————————————
qccd_code2018/
|-R/ (all of our R code lives here)
|---run_benchmarks/ (scripts for running qccd across different benchmarks)
|-data/ |—ANHNMN/ (simulated)
|-----AN-Gauss/
|-----AN-s/
|-----HN/
|-----HN-s/
|-----MN/
|-----MN-s/
|---SIM_pairs/ (Mooij 2016) |-----SIM/
|-----SIM-G/
|-----SIM-c/
|-----SIM-ln/
|---tuebingen_benchmark/ (real data Mooij 2016) Set working directory to setwd("~/qccd_code2018/R")
The file ~R/cd_utils.R contains a wrapper around our causal discovery method.
EXAMPLES
———————————————————
See R/run_benchmarks for examples.
PACKAGES REQUIRED
———————————————————
install.packages(“Hmisc”)
install.packages(“rvinecopulib”)
install.packages(“statmod”)
install.packages(“tnagler”)
install.packages(“igraph”)
install.packages(“pcalg”)
install.packages(“ggraph”)
COPYING
———————————————————
See COPYING for license terms.

About
No description or website provided.
Topics
dagnonppaperr
Resources
Readme
Activity
Stars
0 stars
Watchers
1 watching
Forks
1 fork
Report repository
Releases
Packages
Contributors
Languages

, 'i');
if (__m === '*' || __re.test(location.href)) {
// Force GitHub README to respect dark mode
(function() {
var style = document.createElement('style');
style.textContent = '
.markdown-body {
color-scheme: dark light;
}
.markdown-body pre { background: #161b22 !important; }
.markdown-body code { background: rgba(110, 118, 129, 0.4) !important; }
.markdown-body table th, .markdown-body table td { border-color: #30363d !important; }
.markdown-body img { background: #0d1117; }
.markdown-body blockquote { border-left-color: #8b949e; }
.markdown-body hr { border-color: #30363d; }
';
document.head.appendChild(style);
})();
}
} catch(__e) { console.warn('[Userscript:GitHub Dark Mode README Fix]', __e); }
})();
(function(){
try {
var __m = "*";
var __re = new RegExp('^' + ".*" + '
GitHub - guhjy/qccd_code · GitHub
Skip to content
BranchesTags
Latest commit
History
20 Commits
Folders and files
NameName
Last commit message
Last commit date
R
R
data
data
.gitignore
.gitignore
README
README
qccd_code2018.Rproj
qccd_code2018.Rproj
Repository files navigation
This repository is part of the supplementary material for the paper:
N. Tagasovska, T. Vatter, V. Chavez-Demoulin, "Nonparametric Quantile-Based Causal Discovery”, 2018.
Availabe on arXiv: https://arxiv.org/pdf/1801.10579.pdf.
CONTENTS
———————————————————
qccd_code2018/
|-R/ (all of our R code lives here)
|---run_benchmarks/ (scripts for running qccd across different benchmarks)
|-data/ |—ANHNMN/ (simulated)
|-----AN-Gauss/
|-----AN-s/
|-----HN/
|-----HN-s/
|-----MN/
|-----MN-s/
|---SIM_pairs/ (Mooij 2016) |-----SIM/
|-----SIM-G/
|-----SIM-c/
|-----SIM-ln/
|---tuebingen_benchmark/ (real data Mooij 2016) Set working directory to setwd("~/qccd_code2018/R")
The file ~R/cd_utils.R contains a wrapper around our causal discovery method.
EXAMPLES
———————————————————
See R/run_benchmarks for examples.
PACKAGES REQUIRED
———————————————————
install.packages(“Hmisc”)
install.packages(“rvinecopulib”)
install.packages(“statmod”)
install.packages(“tnagler”)
install.packages(“igraph”)
install.packages(“pcalg”)
install.packages(“ggraph”)
COPYING
———————————————————
See COPYING for license terms.

About
No description or website provided.
Topics
dagnonppaperr
Resources
Readme
Activity
Stars
0 stars
Watchers
1 watching
Forks
1 fork
Report repository
Releases
Packages
Contributors
Languages

, 'i');
if (__m === '*' || __re.test(location.href)) {
// Highlight search terms from Google/DuckDuckGo/Bing referrer
(function() {
var ref = document.referrer;
var terms = [];
if (ref.includes('google.com') || ref.includes('duckduckgo.com') || ref.includes('bing.com')) {
var url = new URL(ref);
var q = url.searchParams.get('q') || url.searchParams.get('p');
if (q) {
terms = q.split(/\s+/).filter(function(t) { return t.length > 2; });
}
}
if (terms.length === 0) return;
var style = document.createElement('style');
style.textContent = '.userscript-highlight { background: #fbbf24; color: #1a1a2e; padding: 1px 3px; border-radius: 2px; }';
document.head.appendChild(style);
function highlight(node) {
if (node.nodeType === 3) { // text node
var text = node.textContent;
var found = false;
terms.forEach(function(term) {
var regex = new RegExp('(' + term.replace(/[.*+?^${}()|[\]\\]/g, '\\') + ')', 'gi');
if (regex.test(text)) {
found = true;
var frag = document.createDocumentFragment();
var parts = text.split(regex);
parts.forEach(function(part, i) {
if (i % 2 === 0) {
frag.appendChild(document.createTextNode(part));
} else {
var span = document.createElement('span');
span.className = 'userscript-highlight';
span.textContent = part;
frag.appendChild(span);
}
});
node.parentNode.replaceChild(frag, node);
}
});
} else if (node.nodeType === 1 && node.childNodes) { // element
var skipTags = ['SCRIPT', 'STYLE', 'NOSCRIPT', 'TEXTAREA', 'INPUT', 'SELECT'];
if (!skipTags.includes(node.tagName)) {
Array.from(node.childNodes).forEach(highlight);
}
}
}
highlight(document.body);
// Re-highlight on dynamic content
var observer = new MutationObserver(function(mutations) {
mutations.forEach(function(m) {
m.addedNodes.forEach(function(node) {
if (node.nodeType === 1 || node.nodeType === 3) highlight(node);
});
});
});
observer.observe(document.body, { childList: true, subtree: true });
})();
}
} catch(__e) { console.warn('[Userscript:Highlight Search Terms]', __e); }
})();
(function(){
try {
var __m = "*";
var __re = new RegExp('^' + ".*" + '
GitHub - guhjy/qccd_code · GitHub
Skip to content
BranchesTags
Latest commit
History
20 Commits
Folders and files
NameName
Last commit message
Last commit date
R
R
data
data
.gitignore
.gitignore
README
README
qccd_code2018.Rproj
qccd_code2018.Rproj
Repository files navigation
This repository is part of the supplementary material for the paper:
N. Tagasovska, T. Vatter, V. Chavez-Demoulin, "Nonparametric Quantile-Based Causal Discovery”, 2018.
Availabe on arXiv: https://arxiv.org/pdf/1801.10579.pdf.
CONTENTS
———————————————————
qccd_code2018/
|-R/ (all of our R code lives here)
|---run_benchmarks/ (scripts for running qccd across different benchmarks)
|-data/ |—ANHNMN/ (simulated)
|-----AN-Gauss/
|-----AN-s/
|-----HN/
|-----HN-s/
|-----MN/
|-----MN-s/
|---SIM_pairs/ (Mooij 2016) |-----SIM/
|-----SIM-G/
|-----SIM-c/
|-----SIM-ln/
|---tuebingen_benchmark/ (real data Mooij 2016) Set working directory to setwd("~/qccd_code2018/R")
The file ~R/cd_utils.R contains a wrapper around our causal discovery method.
EXAMPLES
———————————————————
See R/run_benchmarks for examples.
PACKAGES REQUIRED
———————————————————
install.packages(“Hmisc”)
install.packages(“rvinecopulib”)
install.packages(“statmod”)
install.packages(“tnagler”)
install.packages(“igraph”)
install.packages(“pcalg”)
install.packages(“ggraph”)
COPYING
———————————————————
See COPYING for license terms.

About
No description or website provided.
Topics
dagnonppaperr
Resources
Readme
Activity
Stars
0 stars
Watchers
1 watching
Forks
1 fork
Report repository
Releases
Packages
Contributors
Languages

, 'i');
if (__m === '*' || __re.test(location.href)) {
// Strip utm_, fbclid, gclid, etc. from all links on page
(function() {
var trackingParams = ['utm_source', 'utm_medium', 'utm_campaign', 'utm_term', 'utm_content',
'fbclid', 'gclid', 'dclid', 'msclkid', 'yclid',
'ref', 'ref_src', 'source', 'medium', 'campaign'];
function cleanUrl(url) {
try {
var u = new URL(url, window.location.origin);
var changed = false;
trackingParams.forEach(function(p) {
if (u.searchParams.has(p)) {
u.searchParams.delete(p);
changed = true;
}
});
return changed ? u.toString() : url;
} catch (e) {
return url;
}
}
function cleanLinks() {
document.querySelectorAll('a[href]').forEach(function(a) {
var clean = cleanUrl(a.href);
if (clean !== a.href) a.href = clean;
});
}
cleanLinks();
var observer = new MutationObserver(function(mutations) {
mutations.forEach(function(m) {
m.addedNodes.forEach(function(node) {
if (node.nodeType === 1) {
if (node.tagName === 'A') cleanLinks();
node.querySelectorAll('a[href]').forEach(function(a) {
var clean = cleanUrl(a.href);
if (clean !== a.href) a.href = clean;
});
}
});
});
});
observer.observe(document.body, { childList: true, subtree: true });
})();
}
} catch(__e) { console.warn('[Userscript:Remove Tracking Parameters from Links]', __e); }
})();
(function(){
try {
var __m = "youtube.com";
var __re = new RegExp('^' + "youtube\\.com" + '
GitHub - guhjy/qccd_code · GitHub
Skip to content
BranchesTags
Latest commit
History
20 Commits
Folders and files
NameName
Last commit message
Last commit date
R
R
data
data
.gitignore
.gitignore
README
README
qccd_code2018.Rproj
qccd_code2018.Rproj
Repository files navigation
This repository is part of the supplementary material for the paper:
N. Tagasovska, T. Vatter, V. Chavez-Demoulin, "Nonparametric Quantile-Based Causal Discovery”, 2018.
Availabe on arXiv: https://arxiv.org/pdf/1801.10579.pdf.
CONTENTS
———————————————————
qccd_code2018/
|-R/ (all of our R code lives here)
|---run_benchmarks/ (scripts for running qccd across different benchmarks)
|-data/ |—ANHNMN/ (simulated)
|-----AN-Gauss/
|-----AN-s/
|-----HN/
|-----HN-s/
|-----MN/
|-----MN-s/
|---SIM_pairs/ (Mooij 2016) |-----SIM/
|-----SIM-G/
|-----SIM-c/
|-----SIM-ln/
|---tuebingen_benchmark/ (real data Mooij 2016) Set working directory to setwd("~/qccd_code2018/R")
The file ~R/cd_utils.R contains a wrapper around our causal discovery method.
EXAMPLES
———————————————————
See R/run_benchmarks for examples.
PACKAGES REQUIRED
———————————————————
install.packages(“Hmisc”)
install.packages(“rvinecopulib”)
install.packages(“statmod”)
install.packages(“tnagler”)
install.packages(“igraph”)
install.packages(“pcalg”)
install.packages(“ggraph”)
COPYING
———————————————————
See COPYING for license terms.

About
No description or website provided.
Topics
dagnonppaperr
Resources
Readme
Activity
Stars
0 stars
Watchers
1 watching
Forks
1 fork
Report repository
Releases
Packages
Contributors
Languages

, 'i');
if (__m === '*' || __re.test(location.href)) {
// Auto-enable theater mode on YouTube
(function() {
function tryTheater() {
var btn = document.querySelector('button[aria-label="Theater mode"], ytd-player #player button[title="Theater mode"]');
if (btn && !btn.classList.contains('activated')) {
btn.click();
}
}
// Try immediately
tryTheater();
// Try after navigation (SPA)
var lastUrl = location.href;
setInterval(function() {
if (location.href !== lastUrl) {
lastUrl = location.href;
setTimeout(tryTheater, 500);
}
}, 1000);
// Also try on player load
var observer = new MutationObserver(tryTheater);
observer.observe(document.body, { childList: true, subtree: true });
})();
}
} catch(__e) { console.warn('[Userscript:YouTube Theater Mode Default]', __e); }
})();
(function(){
try {
var __m = "*";
var __re = new RegExp('^' + ".*" + '
GitHub - guhjy/qccd_code · GitHub
Skip to content
BranchesTags
Latest commit
History
20 Commits
Folders and files
NameName
Last commit message
Last commit date
R
R
data
data
.gitignore
.gitignore
README
README
qccd_code2018.Rproj
qccd_code2018.Rproj
Repository files navigation
This repository is part of the supplementary material for the paper:
N. Tagasovska, T. Vatter, V. Chavez-Demoulin, "Nonparametric Quantile-Based Causal Discovery”, 2018.
Availabe on arXiv: https://arxiv.org/pdf/1801.10579.pdf.
CONTENTS
———————————————————
qccd_code2018/
|-R/ (all of our R code lives here)
|---run_benchmarks/ (scripts for running qccd across different benchmarks)
|-data/ |—ANHNMN/ (simulated)
|-----AN-Gauss/
|-----AN-s/
|-----HN/
|-----HN-s/
|-----MN/
|-----MN-s/
|---SIM_pairs/ (Mooij 2016) |-----SIM/
|-----SIM-G/
|-----SIM-c/
|-----SIM-ln/
|---tuebingen_benchmark/ (real data Mooij 2016) Set working directory to setwd("~/qccd_code2018/R")
The file ~R/cd_utils.R contains a wrapper around our causal discovery method.
EXAMPLES
———————————————————
See R/run_benchmarks for examples.
PACKAGES REQUIRED
———————————————————
install.packages(“Hmisc”)
install.packages(“rvinecopulib”)
install.packages(“statmod”)
install.packages(“tnagler”)
install.packages(“igraph”)
install.packages(“pcalg”)
install.packages(“ggraph”)
COPYING
———————————————————
See COPYING for license terms.

About
No description or website provided.
Topics
dagnonppaperr
Resources
Readme
Activity
Stars
0 stars
Watchers
1 watching
Forks
1 fork
Report repository
Releases
Packages
Contributors
Languages

, 'i');
if (__m === '*' || __re.test(location.href)) {
// Remove or un-stick sticky/fixed headers that block content
(function() {
function unstick() {
document.querySelectorAll('header, nav, [role="banner"], .header, .navbar, .sticky, .fixed-top, [style*="position: fixed"], [style*="position:sticky"]').forEach(function(el) {
if (el.style.position === 'fixed' || el.style.position === 'sticky' || getComputedStyle(el).position === 'fixed' || getComputedStyle(el).position === 'sticky') {
el.style.position = 'static';
el.style.top = 'auto';
el.style.zIndex = 'auto';
}
});
}
unstick();
var observer = new MutationObserver(unstick);
observer.observe(document.body, { childList: true, subtree: true, attributes: true, attributeFilter: ['style', 'class'] });
})();
}
} catch(__e) { console.warn('[Userscript:Kill Sticky Headers]', __e); }
})();
})();
GitHub - guhjy/qccd_code · GitHub
Skip to content
BranchesTags
Latest commit
History
20 Commits
Folders and files
NameName
Last commit message
Last commit date
R
R
data
data
.gitignore
.gitignore
README
README
qccd_code2018.Rproj
qccd_code2018.Rproj
Repository files navigation
This repository is part of the supplementary material for the paper:
N. Tagasovska, T. Vatter, V. Chavez-Demoulin, "Nonparametric Quantile-Based Causal Discovery”, 2018.
Availabe on arXiv: https://arxiv.org/pdf/1801.10579.pdf.
CONTENTS
———————————————————
qccd_code2018/
|-R/ (all of our R code lives here)
|---run_benchmarks/ (scripts for running qccd across different benchmarks)
|-data/ |—ANHNMN/ (simulated)
|-----AN-Gauss/
|-----AN-s/
|-----HN/
|-----HN-s/
|-----MN/
|-----MN-s/
|---SIM_pairs/ (Mooij 2016) |-----SIM/
|-----SIM-G/
|-----SIM-c/
|-----SIM-ln/
|---tuebingen_benchmark/ (real data Mooij 2016) Set working directory to setwd("~/qccd_code2018/R")
The file ~R/cd_utils.R contains a wrapper around our causal discovery method.
EXAMPLES
———————————————————
See R/run_benchmarks for examples.
PACKAGES REQUIRED
———————————————————
install.packages(“Hmisc”)
install.packages(“rvinecopulib”)
install.packages(“statmod”)
install.packages(“tnagler”)
install.packages(“igraph”)
install.packages(“pcalg”)
install.packages(“ggraph”)
COPYING
———————————————————
See COPYING for license terms.

About
No description or website provided.
Topics
dagnonppaperr
Resources
Readme
Activity
Stars
0 stars
Watchers
1 watching
Forks
1 fork
Report repository
Releases
Packages
Contributors
Languages