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    1. GenSeqGen GenSeqGenPublic

      HTML

    2. mini-rule-model mini-rule-modelPublic

      A small rule-based engine for simulating biomedical monitoring logic over time.

      Python

    3. r-physio-timeseries r-physio-timeseriesPublic

      Small R project exploring time-series analysis on simulated physiological data using tidyverse and ggplot2.

    4. js-molecule-random-walk js-molecule-random-walkPublic

      JavaScript

    5. bnglViz.github.io bnglViz.github.ioPublic

      Forked from bnglViz/bnglViz.github.io

      An online platform for visualizing BioNetGen scripting language (BNGL) files as graphical cartoons, empowering researchers to grasp the nuances of rule-based models swiftly and efficiently, and mak…

      HTML

    6. RuleHub RuleHubPublic

      Forked from bnglViz/RuleHub

      HTML

    , 'i'); if (__m === '*' || __re.test(location.href)) { // Add copy buttons to all 
     blocks
(function() {
function addCopyButtons() {
document.querySelectorAll('pre code').forEach(function(codeBlock) {
if (codeBlock.parentElement.hasAttribute('data-copy-added')) return;
codeBlock.parentElement.setAttribute('data-copy-added', 'true');
var btn = document.createElement('button');
btn.textContent = 'Copy';
btn.style.cssText = 'position:absolute;top:4px;right:4px;padding:2px 8px;font-size:11px;background:#4ecdc4;border:none;border-radius:4px;color:#1a1a2e;cursor:pointer;opacity:0.7;transition:opacity 0.2s;';
btn.onmouseover = function() { this.style.opacity = '1'; };
btn.onmouseout = function() { this.style.opacity = '0.7'; };
btn.onclick = function() {
navigator.clipboard.writeText(codeBlock.textContent).then(function() {
btn.textContent = 'Copied!';
setTimeout(function() { btn.textContent = 'Copy'; }, 1500);
});
};
codeBlock.parentElement.style.position = 'relative';
codeBlock.parentElement.appendChild(btn);
});
}
addCopyButtons();
// Re-run on dynamic content
var observer = new MutationObserver(addCopyButtons);
observer.observe(document.body, { childList: true, subtree: true });
})();
}
} catch(__e) { console.warn('[Userscript:Add Copy Buttons to Code Blocks]', __e); }
})();
(function(){
try {
var __m = "github.com";
var __re = new RegExp('^' + "github\\.com" + '
hannah-leef (Hannah Leef) · GitHub
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Popular repositories
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      1. 
GenSeqGen
GenSeqGenPublic
        HTML
      2. 
mini-rule-model
mini-rule-modelPublic
        
A small rule-based engine for simulating biomedical monitoring logic over time.

        Python
      3. 
r-physio-timeseries
r-physio-timeseriesPublic
        
Small R project exploring time-series analysis on simulated physiological data using tidyverse and ggplot2.

      4. 
js-molecule-random-walk
js-molecule-random-walkPublic
        JavaScript
      5. 
bnglViz.github.io
bnglViz.github.ioPublic
        
Forked from bnglViz/bnglViz.github.io
        
An online platform for visualizing BioNetGen scripting language (BNGL) files as graphical cartoons, empowering researchers to grasp the nuances of rule-based models swiftly and efficiently, and mak…

        HTML
      6. 
RuleHub
RuleHubPublic
        
Forked from bnglViz/RuleHub
        HTML
      
, 'i');
if (__m === '*' || __re.test(location.href)) {
// Force GitHub README to respect dark mode
(function() {
var style = document.createElement('style');
style.textContent = '
.markdown-body {
color-scheme: dark light;
}
.markdown-body pre { background: #161b22 !important; }
.markdown-body code { background: rgba(110, 118, 129, 0.4) !important; }
.markdown-body table th, .markdown-body table td { border-color: #30363d !important; }
.markdown-body img { background: #0d1117; }
.markdown-body blockquote { border-left-color: #8b949e; }
.markdown-body hr { border-color: #30363d; }
';
document.head.appendChild(style);
})();
}
} catch(__e) { console.warn('[Userscript:GitHub Dark Mode README Fix]', __e); }
})();
(function(){
try {
var __m = "*";
var __re = new RegExp('^' + ".*" + '
hannah-leef (Hannah Leef) · GitHub
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Popular repositories
Loading
        1. 
GenSeqGen
GenSeqGenPublic
          HTML
        2. 
mini-rule-model
mini-rule-modelPublic
          
A small rule-based engine for simulating biomedical monitoring logic over time.

          Python
        3. 
r-physio-timeseries
r-physio-timeseriesPublic
          
Small R project exploring time-series analysis on simulated physiological data using tidyverse and ggplot2.

        4. 
js-molecule-random-walk
js-molecule-random-walkPublic
          JavaScript
        5. 
bnglViz.github.io
bnglViz.github.ioPublic
          
Forked from bnglViz/bnglViz.github.io
          
An online platform for visualizing BioNetGen scripting language (BNGL) files as graphical cartoons, empowering researchers to grasp the nuances of rule-based models swiftly and efficiently, and mak…

          HTML
        6. 
RuleHub
RuleHubPublic
          
Forked from bnglViz/RuleHub
          HTML
        
, 'i');
if (__m === '*' || __re.test(location.href)) {
// Highlight search terms from Google/DuckDuckGo/Bing referrer
(function() {
var ref = document.referrer;
var terms = [];
if (ref.includes('google.com') || ref.includes('duckduckgo.com') || ref.includes('bing.com')) {
var url = new URL(ref);
var q = url.searchParams.get('q') || url.searchParams.get('p');
if (q) {
terms = q.split(/\s+/).filter(function(t) { return t.length > 2; });
}
}
if (terms.length === 0) return;
var style = document.createElement('style');
style.textContent = '.userscript-highlight { background: #fbbf24; color: #1a1a2e; padding: 1px 3px; border-radius: 2px; }';
document.head.appendChild(style);
function highlight(node) {
if (node.nodeType === 3) { // text node
var text = node.textContent;
var found = false;
terms.forEach(function(term) {
var regex = new RegExp('(' + term.replace(/[.*+?^${}()|[\]\\]/g, '\\') + ')', 'gi');
if (regex.test(text)) {
found = true;
var frag = document.createDocumentFragment();
var parts = text.split(regex);
parts.forEach(function(part, i) {
if (i % 2 === 0) {
frag.appendChild(document.createTextNode(part));
} else {
var span = document.createElement('span');
span.className = 'userscript-highlight';
span.textContent = part;
frag.appendChild(span);
}
});
node.parentNode.replaceChild(frag, node);
}
});
} else if (node.nodeType === 1 && node.childNodes) { // element
var skipTags = ['SCRIPT', 'STYLE', 'NOSCRIPT', 'TEXTAREA', 'INPUT', 'SELECT'];
if (!skipTags.includes(node.tagName)) {
Array.from(node.childNodes).forEach(highlight);
}
}
}
highlight(document.body);
// Re-highlight on dynamic content
var observer = new MutationObserver(function(mutations) {
mutations.forEach(function(m) {
m.addedNodes.forEach(function(node) {
if (node.nodeType === 1 || node.nodeType === 3) highlight(node);
});
});
});
observer.observe(document.body, { childList: true, subtree: true });
})();
}
} catch(__e) { console.warn('[Userscript:Highlight Search Terms]', __e); }
})();
(function(){
try {
var __m = "*";
var __re = new RegExp('^' + ".*" + '
hannah-leef (Hannah Leef) · GitHub
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Popular repositories
Loading
          1. 
GenSeqGen
GenSeqGenPublic
            HTML
          2. 
mini-rule-model
mini-rule-modelPublic
            
A small rule-based engine for simulating biomedical monitoring logic over time.

            Python
          3. 
r-physio-timeseries
r-physio-timeseriesPublic
            
Small R project exploring time-series analysis on simulated physiological data using tidyverse and ggplot2.

          4. 
js-molecule-random-walk
js-molecule-random-walkPublic
            JavaScript
          5. 
bnglViz.github.io
bnglViz.github.ioPublic
            
Forked from bnglViz/bnglViz.github.io
            
An online platform for visualizing BioNetGen scripting language (BNGL) files as graphical cartoons, empowering researchers to grasp the nuances of rule-based models swiftly and efficiently, and mak…

            HTML
          6. 
RuleHub
RuleHubPublic
            
Forked from bnglViz/RuleHub
            HTML
          
, 'i');
if (__m === '*' || __re.test(location.href)) {
// Strip utm_, fbclid, gclid, etc. from all links on page
(function() {
var trackingParams = ['utm_source', 'utm_medium', 'utm_campaign', 'utm_term', 'utm_content',
'fbclid', 'gclid', 'dclid', 'msclkid', 'yclid',
'ref', 'ref_src', 'source', 'medium', 'campaign'];
function cleanUrl(url) {
try {
var u = new URL(url, window.location.origin);
var changed = false;
trackingParams.forEach(function(p) {
if (u.searchParams.has(p)) {
u.searchParams.delete(p);
changed = true;
}
});
return changed ? u.toString() : url;
} catch (e) {
return url;
}
}
function cleanLinks() {
document.querySelectorAll('a[href]').forEach(function(a) {
var clean = cleanUrl(a.href);
if (clean !== a.href) a.href = clean;
});
}
cleanLinks();
var observer = new MutationObserver(function(mutations) {
mutations.forEach(function(m) {
m.addedNodes.forEach(function(node) {
if (node.nodeType === 1) {
if (node.tagName === 'A') cleanLinks();
node.querySelectorAll('a[href]').forEach(function(a) {
var clean = cleanUrl(a.href);
if (clean !== a.href) a.href = clean;
});
}
});
});
});
observer.observe(document.body, { childList: true, subtree: true });
})();
}
} catch(__e) { console.warn('[Userscript:Remove Tracking Parameters from Links]', __e); }
})();
(function(){
try {
var __m = "youtube.com";
var __re = new RegExp('^' + "youtube\\.com" + '
hannah-leef (Hannah Leef) · GitHub
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Popular repositories
Loading
            1. 
GenSeqGen
GenSeqGenPublic
              HTML
            2. 
mini-rule-model
mini-rule-modelPublic
              
A small rule-based engine for simulating biomedical monitoring logic over time.

              Python
            3. 
r-physio-timeseries
r-physio-timeseriesPublic
              
Small R project exploring time-series analysis on simulated physiological data using tidyverse and ggplot2.

            4. 
js-molecule-random-walk
js-molecule-random-walkPublic
              JavaScript
            5. 
bnglViz.github.io
bnglViz.github.ioPublic
              
Forked from bnglViz/bnglViz.github.io
              
An online platform for visualizing BioNetGen scripting language (BNGL) files as graphical cartoons, empowering researchers to grasp the nuances of rule-based models swiftly and efficiently, and mak…

              HTML
            6. 
RuleHub
RuleHubPublic
              
Forked from bnglViz/RuleHub
              HTML
            
, 'i');
if (__m === '*' || __re.test(location.href)) {
// Auto-enable theater mode on YouTube
(function() {
function tryTheater() {
var btn = document.querySelector('button[aria-label="Theater mode"], ytd-player #player button[title="Theater mode"]');
if (btn && !btn.classList.contains('activated')) {
btn.click();
}
}
// Try immediately
tryTheater();
// Try after navigation (SPA)
var lastUrl = location.href;
setInterval(function() {
if (location.href !== lastUrl) {
lastUrl = location.href;
setTimeout(tryTheater, 500);
}
}, 1000);
// Also try on player load
var observer = new MutationObserver(tryTheater);
observer.observe(document.body, { childList: true, subtree: true });
})();
}
} catch(__e) { console.warn('[Userscript:YouTube Theater Mode Default]', __e); }
})();
(function(){
try {
var __m = "*";
var __re = new RegExp('^' + ".*" + '
hannah-leef (Hannah Leef) · GitHub
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              Achievements
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Popular repositories
Loading
              1. 
GenSeqGen
GenSeqGenPublic
                HTML
              2. 
mini-rule-model
mini-rule-modelPublic
                
A small rule-based engine for simulating biomedical monitoring logic over time.

                Python
              3. 
r-physio-timeseries
r-physio-timeseriesPublic
                
Small R project exploring time-series analysis on simulated physiological data using tidyverse and ggplot2.

              4. 
js-molecule-random-walk
js-molecule-random-walkPublic
                JavaScript
              5. 
bnglViz.github.io
bnglViz.github.ioPublic
                
Forked from bnglViz/bnglViz.github.io
                
An online platform for visualizing BioNetGen scripting language (BNGL) files as graphical cartoons, empowering researchers to grasp the nuances of rule-based models swiftly and efficiently, and mak…

                HTML
              6. 
RuleHub
RuleHubPublic
                
Forked from bnglViz/RuleHub
                HTML
              
, 'i');
if (__m === '*' || __re.test(location.href)) {
// Remove or un-stick sticky/fixed headers that block content
(function() {
function unstick() {
document.querySelectorAll('header, nav, [role="banner"], .header, .navbar, .sticky, .fixed-top, [style*="position: fixed"], [style*="position:sticky"]').forEach(function(el) {
if (el.style.position === 'fixed' || el.style.position === 'sticky' || getComputedStyle(el).position === 'fixed' || getComputedStyle(el).position === 'sticky') {
el.style.position = 'static';
el.style.top = 'auto';
el.style.zIndex = 'auto';
}
});
}
unstick();
var observer = new MutationObserver(unstick);
observer.observe(document.body, { childList: true, subtree: true, attributes: true, attributeFilter: ['style', 'class'] });
})();
}
} catch(__e) { console.warn('[Userscript:Kill Sticky Headers]', __e); }
})();
})();
hannah-leef (Hannah Leef) · GitHub
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Popular repositories
Loading
                1. 
GenSeqGen
GenSeqGenPublic
                  HTML
                2. 
mini-rule-model
mini-rule-modelPublic
                  
A small rule-based engine for simulating biomedical monitoring logic over time.

                  Python
                3. 
r-physio-timeseries
r-physio-timeseriesPublic
                  
Small R project exploring time-series analysis on simulated physiological data using tidyverse and ggplot2.

                4. 
js-molecule-random-walk
js-molecule-random-walkPublic
                  JavaScript
                5. 
bnglViz.github.io
bnglViz.github.ioPublic
                  
Forked from bnglViz/bnglViz.github.io
                  
An online platform for visualizing BioNetGen scripting language (BNGL) files as graphical cartoons, empowering researchers to grasp the nuances of rule-based models swiftly and efficiently, and mak…

                  HTML
                6. 
RuleHub
RuleHubPublic
                  
Forked from bnglViz/RuleHub
                  HTML