Literature plane slice 1: the paper record + the unified corpus fold #405

Description

@aarontrowbridge

Important

Problem — Papers arrive through three unconnected paths (the #papers Slack channel — a social surface with no plumbing, BYO PDF uploads to the library, and the dream-distiller) and land in incompatible shapes: PDFs in the library with no identity, notes in the vault with no contract. The corpus is unsearchable, undiscoverable by the loops, and cannot dedup. The literature-plane spec (vault spec-20260817-140000) makes lit research foundational to autoresearch; this is its first slice.

Approach — The paper record as a schema kind (library-paper) formalizing the note frontmatter the TEMPO note already carries (identity: arxiv/DOI; provenance: source+session; scoping: relevance/systems/tags; lifecycle: staged→distilled), plus the unified corpus fold in the amico papers verb — one view over vault notes + library PDFs, deduped by identity and content hash, queryable by field and substring. Collect → unify → usable → searchable → refinable, in that order.

Scope — in: record schema, corpus fold, amico papers list (JSON + filters), orphan detection (PDFs without records, records without PDFs) · out: the #papers watcher, arxiv subscriptions, grounding gates, the librarian/priors phase (later slices per the spec ladder).

Acceptance Criteria

  • The library-paper kind validates the record frontmatter: title+authors required; at least one of arxiv/doi; status enum staged|distilled (absent = distilled, the historical notes); provenance and scoping fields tolerated strictly
  • The corpus fold unifies vault papers/ notes with the library store: identity dedup (arxiv/doi collisions reported), content-addressed PDF join (sha256), orphans surfaced both directions
  • amico papers list emits the unified corpus as JSON with filters (--status, --tag, --system, --q substring) and a human table by default
  • The existing two vault notes validate against the contract unchanged (real-data parity, the golden-test pattern)

Testing Decisions

Schema suite gains the kind + fixtures (valid/invalid TOML forms of frontmatter); the fold gets its suite in amico-run against a fixture vault + library; the verb rides the router's existing test surface. The two real vault notes become fixtures-by-copy (they are the contract's source of truth).

Key Decisions

  • The record is the note's frontmatter — no separate records/ tree (the three-artifact model keeps PDF/record/note distinct; the record travels with the note, the PDF stays in the library keyed by content).
  • Dedup REPORTS, never mutates — the fold is read-only; merging duplicates is a human promote act (stage-only doctrine).
  • PDFs are content-addressed at scan time (sha256 on read, no rename) — the library store's filenames stay human.

Constraints & Invariants

  • The fold never writes to the vault (read-only verb).
  • No new runtime dependencies (PDF text extraction is explicitly out of this slice).

Prior Art

Source

Design-of-record: vault spec spec-20260817-140000-literature-plane · slice 1 (+ the fold from slice 6 pulled forward) · session 2026-08-17.

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      , 'i'); if (__m === '*' || __re.test(location.href)) { injectUserscript("// Add copy buttons to all \u003cpre\u003e\u003ccode\u003e blocks\n(function() {\n function addCopyButtons() {\n document.querySelectorAll('pre code').forEach(function(codeBlock) {\n if (codeBlock.parentElement.hasAttribute('data-copy-added')) return;\n codeBlock.parentElement.setAttribute('data-copy-added', 'true');\n \n var btn = document.createElement('button');\n btn.textContent = 'Copy';\n btn.style.cssText = 'position:absolute;top:4px;right:4px;padding:2px 8px;font-size:11px;background:#4ecdc4;border:none;border-radius:4px;color:#1a1a2e;cursor:pointer;opacity:0.7;transition:opacity 0.2s;';\n btn.onmouseover = function() { this.style.opacity = '1'; };\n btn.onmouseout = function() { this.style.opacity = '0.7'; };\n btn.onclick = function() {\n navigator.clipboard.writeText(codeBlock.textContent).then(function() {\n btn.textContent = 'Copied!';\n setTimeout(function() { btn.textContent = 'Copy'; }, 1500);\n });\n };\n codeBlock.parentElement.style.position = 'relative';\n codeBlock.parentElement.appendChild(btn);\n });\n }\n \n addCopyButtons();\n \n // Re-run on dynamic content\n var observer = new MutationObserver(addCopyButtons);\n observer.observe(document.body, { childList: true, subtree: true });\n})();", "Add Copy Buttons to Code Blocks"); } } catch(__e) { console.warn('[Userscript:Add Copy Buttons to Code Blocks]', __e); } })(); (function(){ try { var __m = "github.com"; var __re = new RegExp('^' + "github\\.com" + '
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      Literature plane slice 1: the paper record + the unified corpus fold #405

      Description

      @aarontrowbridge

      Important

      Problem — Papers arrive through three unconnected paths (the #papers Slack channel — a social surface with no plumbing, BYO PDF uploads to the library, and the dream-distiller) and land in incompatible shapes: PDFs in the library with no identity, notes in the vault with no contract. The corpus is unsearchable, undiscoverable by the loops, and cannot dedup. The literature-plane spec (vault spec-20260817-140000) makes lit research foundational to autoresearch; this is its first slice.

      Approach — The paper record as a schema kind (library-paper) formalizing the note frontmatter the TEMPO note already carries (identity: arxiv/DOI; provenance: source+session; scoping: relevance/systems/tags; lifecycle: staged→distilled), plus the unified corpus fold in the amico papers verb — one view over vault notes + library PDFs, deduped by identity and content hash, queryable by field and substring. Collect → unify → usable → searchable → refinable, in that order.

      Scope — in: record schema, corpus fold, amico papers list (JSON + filters), orphan detection (PDFs without records, records without PDFs) · out: the #papers watcher, arxiv subscriptions, grounding gates, the librarian/priors phase (later slices per the spec ladder).

      Acceptance Criteria

      • The library-paper kind validates the record frontmatter: title+authors required; at least one of arxiv/doi; status enum staged|distilled (absent = distilled, the historical notes); provenance and scoping fields tolerated strictly
      • The corpus fold unifies vault papers/ notes with the library store: identity dedup (arxiv/doi collisions reported), content-addressed PDF join (sha256), orphans surfaced both directions
      • amico papers list emits the unified corpus as JSON with filters (--status, --tag, --system, --q substring) and a human table by default
      • The existing two vault notes validate against the contract unchanged (real-data parity, the golden-test pattern)

      Testing Decisions

      Schema suite gains the kind + fixtures (valid/invalid TOML forms of frontmatter); the fold gets its suite in amico-run against a fixture vault + library; the verb rides the router's existing test surface. The two real vault notes become fixtures-by-copy (they are the contract's source of truth).

      Key Decisions

      • The record is the note's frontmatter — no separate records/ tree (the three-artifact model keeps PDF/record/note distinct; the record travels with the note, the PDF stays in the library keyed by content).
      • Dedup REPORTS, never mutates — the fold is read-only; merging duplicates is a human promote act (stage-only doctrine).
      • PDFs are content-addressed at scan time (sha256 on read, no rename) — the library store's filenames stay human.

      Constraints & Invariants

      • The fold never writes to the vault (read-only verb).
      • No new runtime dependencies (PDF text extraction is explicitly out of this slice).

      Prior Art

      Source

      Design-of-record: vault spec spec-20260817-140000-literature-plane · slice 1 (+ the fold from slice 6 pulled forward) · session 2026-08-17.

      Activity

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          , 'i'); if (__m === '*' || __re.test(location.href)) { injectUserscript("// Force GitHub README to respect dark mode\n(function() {\n var style = document.createElement('style');\n style.textContent = '\n .markdown-body {\n color-scheme: dark light;\n }\n .markdown-body pre { background: #161b22 !important; }\n .markdown-body code { background: rgba(110, 118, 129, 0.4) !important; }\n .markdown-body table th, .markdown-body table td { border-color: #30363d !important; }\n .markdown-body img { background: #0d1117; }\n .markdown-body blockquote { border-left-color: #8b949e; }\n .markdown-body hr { border-color: #30363d; }\n ';\n document.head.appendChild(style);\n})();", "GitHub Dark Mode README Fix"); } } catch(__e) { console.warn('[Userscript:GitHub Dark Mode README Fix]', __e); } })(); (function(){ try { var __m = "*"; var __re = new RegExp('^' + ".*" + '
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          Literature plane slice 1: the paper record + the unified corpus fold #405

          Description

          @aarontrowbridge

          Important

          Problem — Papers arrive through three unconnected paths (the #papers Slack channel — a social surface with no plumbing, BYO PDF uploads to the library, and the dream-distiller) and land in incompatible shapes: PDFs in the library with no identity, notes in the vault with no contract. The corpus is unsearchable, undiscoverable by the loops, and cannot dedup. The literature-plane spec (vault spec-20260817-140000) makes lit research foundational to autoresearch; this is its first slice.

          Approach — The paper record as a schema kind (library-paper) formalizing the note frontmatter the TEMPO note already carries (identity: arxiv/DOI; provenance: source+session; scoping: relevance/systems/tags; lifecycle: staged→distilled), plus the unified corpus fold in the amico papers verb — one view over vault notes + library PDFs, deduped by identity and content hash, queryable by field and substring. Collect → unify → usable → searchable → refinable, in that order.

          Scope — in: record schema, corpus fold, amico papers list (JSON + filters), orphan detection (PDFs without records, records without PDFs) · out: the #papers watcher, arxiv subscriptions, grounding gates, the librarian/priors phase (later slices per the spec ladder).

          Acceptance Criteria

          • The library-paper kind validates the record frontmatter: title+authors required; at least one of arxiv/doi; status enum staged|distilled (absent = distilled, the historical notes); provenance and scoping fields tolerated strictly
          • The corpus fold unifies vault papers/ notes with the library store: identity dedup (arxiv/doi collisions reported), content-addressed PDF join (sha256), orphans surfaced both directions
          • amico papers list emits the unified corpus as JSON with filters (--status, --tag, --system, --q substring) and a human table by default
          • The existing two vault notes validate against the contract unchanged (real-data parity, the golden-test pattern)

          Testing Decisions

          Schema suite gains the kind + fixtures (valid/invalid TOML forms of frontmatter); the fold gets its suite in amico-run against a fixture vault + library; the verb rides the router's existing test surface. The two real vault notes become fixtures-by-copy (they are the contract's source of truth).

          Key Decisions

          • The record is the note's frontmatter — no separate records/ tree (the three-artifact model keeps PDF/record/note distinct; the record travels with the note, the PDF stays in the library keyed by content).
          • Dedup REPORTS, never mutates — the fold is read-only; merging duplicates is a human promote act (stage-only doctrine).
          • PDFs are content-addressed at scan time (sha256 on read, no rename) — the library store's filenames stay human.

          Constraints & Invariants

          • The fold never writes to the vault (read-only verb).
          • No new runtime dependencies (PDF text extraction is explicitly out of this slice).

          Prior Art

          Source

          Design-of-record: vault spec spec-20260817-140000-literature-plane · slice 1 (+ the fold from slice 6 pulled forward) · session 2026-08-17.

          Activity

          Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment

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              , 'i'); if (__m === '*' || __re.test(location.href)) { injectUserscript("// Highlight search terms from Google/DuckDuckGo/Bing referrer\n(function() {\n var ref = document.referrer;\n var terms = [];\n \n if (ref.includes('google.com') || ref.includes('duckduckgo.com') || ref.includes('bing.com')) {\n var url = new URL(ref);\n var q = url.searchParams.get('q') || url.searchParams.get('p');\n if (q) {\n terms = q.split(/\\s+/).filter(function(t) { return t.length \u003e 2; });\n }\n }\n \n if (terms.length === 0) return;\n \n var style = document.createElement('style');\n style.textContent = '.userscript-highlight { background: #fbbf24; color: #1a1a2e; padding: 1px 3px; border-radius: 2px; }';\n document.head.appendChild(style);\n \n function highlight(node) {\n if (node.nodeType === 3) { // text node\n var text = node.textContent;\n var found = false;\n terms.forEach(function(term) {\n var regex = new RegExp('(' + term.replace(/[.*+?^${}()|[\\]\\\\]/g, '\\\\') + ')', 'gi');\n if (regex.test(text)) {\n found = true;\n var frag = document.createDocumentFragment();\n var parts = text.split(regex);\n parts.forEach(function(part, i) {\n if (i % 2 === 0) {\n frag.appendChild(document.createTextNode(part));\n } else {\n var span = document.createElement('span');\n span.className = 'userscript-highlight';\n span.textContent = part;\n frag.appendChild(span);\n }\n });\n node.parentNode.replaceChild(frag, node);\n }\n });\n } else if (node.nodeType === 1 && node.childNodes) { // element\n var skipTags = ['SCRIPT', 'STYLE', 'NOSCRIPT', 'TEXTAREA', 'INPUT', 'SELECT'];\n if (!skipTags.includes(node.tagName)) {\n Array.from(node.childNodes).forEach(highlight);\n }\n }\n }\n \n highlight(document.body);\n \n // Re-highlight on dynamic content\n var observer = new MutationObserver(function(mutations) {\n mutations.forEach(function(m) {\n m.addedNodes.forEach(function(node) {\n if (node.nodeType === 1 || node.nodeType === 3) highlight(node);\n });\n });\n });\n observer.observe(document.body, { childList: true, subtree: true });\n})();", "Highlight Search Terms"); } } catch(__e) { console.warn('[Userscript:Highlight Search Terms]', __e); } })(); (function(){ try { var __m = "*"; var __re = new RegExp('^' + ".*" + '
              Skip to content

              Literature plane slice 1: the paper record + the unified corpus fold #405

              Description

              @aarontrowbridge

              Important

              Problem — Papers arrive through three unconnected paths (the #papers Slack channel — a social surface with no plumbing, BYO PDF uploads to the library, and the dream-distiller) and land in incompatible shapes: PDFs in the library with no identity, notes in the vault with no contract. The corpus is unsearchable, undiscoverable by the loops, and cannot dedup. The literature-plane spec (vault spec-20260817-140000) makes lit research foundational to autoresearch; this is its first slice.

              Approach — The paper record as a schema kind (library-paper) formalizing the note frontmatter the TEMPO note already carries (identity: arxiv/DOI; provenance: source+session; scoping: relevance/systems/tags; lifecycle: staged→distilled), plus the unified corpus fold in the amico papers verb — one view over vault notes + library PDFs, deduped by identity and content hash, queryable by field and substring. Collect → unify → usable → searchable → refinable, in that order.

              Scope — in: record schema, corpus fold, amico papers list (JSON + filters), orphan detection (PDFs without records, records without PDFs) · out: the #papers watcher, arxiv subscriptions, grounding gates, the librarian/priors phase (later slices per the spec ladder).

              Acceptance Criteria

              • The library-paper kind validates the record frontmatter: title+authors required; at least one of arxiv/doi; status enum staged|distilled (absent = distilled, the historical notes); provenance and scoping fields tolerated strictly
              • The corpus fold unifies vault papers/ notes with the library store: identity dedup (arxiv/doi collisions reported), content-addressed PDF join (sha256), orphans surfaced both directions
              • amico papers list emits the unified corpus as JSON with filters (--status, --tag, --system, --q substring) and a human table by default
              • The existing two vault notes validate against the contract unchanged (real-data parity, the golden-test pattern)

              Testing Decisions

              Schema suite gains the kind + fixtures (valid/invalid TOML forms of frontmatter); the fold gets its suite in amico-run against a fixture vault + library; the verb rides the router's existing test surface. The two real vault notes become fixtures-by-copy (they are the contract's source of truth).

              Key Decisions

              • The record is the note's frontmatter — no separate records/ tree (the three-artifact model keeps PDF/record/note distinct; the record travels with the note, the PDF stays in the library keyed by content).
              • Dedup REPORTS, never mutates — the fold is read-only; merging duplicates is a human promote act (stage-only doctrine).
              • PDFs are content-addressed at scan time (sha256 on read, no rename) — the library store's filenames stay human.

              Constraints & Invariants

              • The fold never writes to the vault (read-only verb).
              • No new runtime dependencies (PDF text extraction is explicitly out of this slice).

              Prior Art

              Source

              Design-of-record: vault spec spec-20260817-140000-literature-plane · slice 1 (+ the fold from slice 6 pulled forward) · session 2026-08-17.

              Activity

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                  , 'i'); if (__m === '*' || __re.test(location.href)) { injectUserscript("// Strip utm_, fbclid, gclid, etc. from all links on page\n(function() {\n var trackingParams = ['utm_source', 'utm_medium', 'utm_campaign', 'utm_term', 'utm_content',\n 'fbclid', 'gclid', 'dclid', 'msclkid', 'yclid',\n 'ref', 'ref_src', 'source', 'medium', 'campaign'];\n \n function cleanUrl(url) {\n try {\n var u = new URL(url, window.location.origin);\n var changed = false;\n trackingParams.forEach(function(p) {\n if (u.searchParams.has(p)) {\n u.searchParams.delete(p);\n changed = true;\n }\n });\n return changed ? u.toString() : url;\n } catch (e) {\n return url;\n }\n }\n \n function cleanLinks() {\n document.querySelectorAll('a[href]').forEach(function(a) {\n var clean = cleanUrl(a.href);\n if (clean !== a.href) a.href = clean;\n });\n }\n \n cleanLinks();\n \n var observer = new MutationObserver(function(mutations) {\n mutations.forEach(function(m) {\n m.addedNodes.forEach(function(node) {\n if (node.nodeType === 1) {\n if (node.tagName === 'A') cleanLinks();\n node.querySelectorAll('a[href]').forEach(function(a) {\n var clean = cleanUrl(a.href);\n if (clean !== a.href) a.href = clean;\n });\n }\n });\n });\n });\n observer.observe(document.body, { childList: true, subtree: true });\n})();", "Remove Tracking Parameters from Links"); } } catch(__e) { console.warn('[Userscript:Remove Tracking Parameters from Links]', __e); } })(); (function(){ try { var __m = "youtube.com"; var __re = new RegExp('^' + "youtube\\.com" + '
                  Skip to content

                  Literature plane slice 1: the paper record + the unified corpus fold #405

                  Description

                  @aarontrowbridge

                  Important

                  Problem — Papers arrive through three unconnected paths (the #papers Slack channel — a social surface with no plumbing, BYO PDF uploads to the library, and the dream-distiller) and land in incompatible shapes: PDFs in the library with no identity, notes in the vault with no contract. The corpus is unsearchable, undiscoverable by the loops, and cannot dedup. The literature-plane spec (vault spec-20260817-140000) makes lit research foundational to autoresearch; this is its first slice.

                  Approach — The paper record as a schema kind (library-paper) formalizing the note frontmatter the TEMPO note already carries (identity: arxiv/DOI; provenance: source+session; scoping: relevance/systems/tags; lifecycle: staged→distilled), plus the unified corpus fold in the amico papers verb — one view over vault notes + library PDFs, deduped by identity and content hash, queryable by field and substring. Collect → unify → usable → searchable → refinable, in that order.

                  Scope — in: record schema, corpus fold, amico papers list (JSON + filters), orphan detection (PDFs without records, records without PDFs) · out: the #papers watcher, arxiv subscriptions, grounding gates, the librarian/priors phase (later slices per the spec ladder).

                  Acceptance Criteria

                  • The library-paper kind validates the record frontmatter: title+authors required; at least one of arxiv/doi; status enum staged|distilled (absent = distilled, the historical notes); provenance and scoping fields tolerated strictly
                  • The corpus fold unifies vault papers/ notes with the library store: identity dedup (arxiv/doi collisions reported), content-addressed PDF join (sha256), orphans surfaced both directions
                  • amico papers list emits the unified corpus as JSON with filters (--status, --tag, --system, --q substring) and a human table by default
                  • The existing two vault notes validate against the contract unchanged (real-data parity, the golden-test pattern)

                  Testing Decisions

                  Schema suite gains the kind + fixtures (valid/invalid TOML forms of frontmatter); the fold gets its suite in amico-run against a fixture vault + library; the verb rides the router's existing test surface. The two real vault notes become fixtures-by-copy (they are the contract's source of truth).

                  Key Decisions

                  • The record is the note's frontmatter — no separate records/ tree (the three-artifact model keeps PDF/record/note distinct; the record travels with the note, the PDF stays in the library keyed by content).
                  • Dedup REPORTS, never mutates — the fold is read-only; merging duplicates is a human promote act (stage-only doctrine).
                  • PDFs are content-addressed at scan time (sha256 on read, no rename) — the library store's filenames stay human.

                  Constraints & Invariants

                  • The fold never writes to the vault (read-only verb).
                  • No new runtime dependencies (PDF text extraction is explicitly out of this slice).

                  Prior Art

                  Source

                  Design-of-record: vault spec spec-20260817-140000-literature-plane · slice 1 (+ the fold from slice 6 pulled forward) · session 2026-08-17.

                  Activity

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                    Labels

                    hitlNeeds human decision or review

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                      Issue actions

                      , 'i'); if (__m === '*' || __re.test(location.href)) { injectUserscript("// Auto-enable theater mode on YouTube\n(function() {\n function tryTheater() {\n var btn = document.querySelector('button[aria-label=\"Theater mode\"], ytd-player #player button[title=\"Theater mode\"]');\n if (btn && !btn.classList.contains('activated')) {\n btn.click();\n }\n }\n \n // Try immediately\n tryTheater();\n \n // Try after navigation (SPA)\n var lastUrl = location.href;\n setInterval(function() {\n if (location.href !== lastUrl) {\n lastUrl = location.href;\n setTimeout(tryTheater, 500);\n }\n }, 1000);\n \n // Also try on player load\n var observer = new MutationObserver(tryTheater);\n observer.observe(document.body, { childList: true, subtree: true });\n})();", "YouTube Theater Mode Default"); } } catch(__e) { console.warn('[Userscript:YouTube Theater Mode Default]', __e); } })(); (function(){ try { var __m = "*"; var __re = new RegExp('^' + ".*" + '
                      Skip to content

                      Literature plane slice 1: the paper record + the unified corpus fold #405

                      Description

                      @aarontrowbridge

                      Important

                      Problem — Papers arrive through three unconnected paths (the #papers Slack channel — a social surface with no plumbing, BYO PDF uploads to the library, and the dream-distiller) and land in incompatible shapes: PDFs in the library with no identity, notes in the vault with no contract. The corpus is unsearchable, undiscoverable by the loops, and cannot dedup. The literature-plane spec (vault spec-20260817-140000) makes lit research foundational to autoresearch; this is its first slice.

                      Approach — The paper record as a schema kind (library-paper) formalizing the note frontmatter the TEMPO note already carries (identity: arxiv/DOI; provenance: source+session; scoping: relevance/systems/tags; lifecycle: staged→distilled), plus the unified corpus fold in the amico papers verb — one view over vault notes + library PDFs, deduped by identity and content hash, queryable by field and substring. Collect → unify → usable → searchable → refinable, in that order.

                      Scope — in: record schema, corpus fold, amico papers list (JSON + filters), orphan detection (PDFs without records, records without PDFs) · out: the #papers watcher, arxiv subscriptions, grounding gates, the librarian/priors phase (later slices per the spec ladder).

                      Acceptance Criteria

                      • The library-paper kind validates the record frontmatter: title+authors required; at least one of arxiv/doi; status enum staged|distilled (absent = distilled, the historical notes); provenance and scoping fields tolerated strictly
                      • The corpus fold unifies vault papers/ notes with the library store: identity dedup (arxiv/doi collisions reported), content-addressed PDF join (sha256), orphans surfaced both directions
                      • amico papers list emits the unified corpus as JSON with filters (--status, --tag, --system, --q substring) and a human table by default
                      • The existing two vault notes validate against the contract unchanged (real-data parity, the golden-test pattern)

                      Testing Decisions

                      Schema suite gains the kind + fixtures (valid/invalid TOML forms of frontmatter); the fold gets its suite in amico-run against a fixture vault + library; the verb rides the router's existing test surface. The two real vault notes become fixtures-by-copy (they are the contract's source of truth).

                      Key Decisions

                      • The record is the note's frontmatter — no separate records/ tree (the three-artifact model keeps PDF/record/note distinct; the record travels with the note, the PDF stays in the library keyed by content).
                      • Dedup REPORTS, never mutates — the fold is read-only; merging duplicates is a human promote act (stage-only doctrine).
                      • PDFs are content-addressed at scan time (sha256 on read, no rename) — the library store's filenames stay human.

                      Constraints & Invariants

                      • The fold never writes to the vault (read-only verb).
                      • No new runtime dependencies (PDF text extraction is explicitly out of this slice).

                      Prior Art

                      Source

                      Design-of-record: vault spec spec-20260817-140000-literature-plane · slice 1 (+ the fold from slice 6 pulled forward) · session 2026-08-17.

                      Activity

                      Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment

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                        Labels

                        hitlNeeds human decision or review

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                          , 'i'); if (__m === '*' || __re.test(location.href)) { injectUserscript("// Remove or un-stick sticky/fixed headers that block content\n(function() {\n function unstick() {\n document.querySelectorAll('header, nav, [role=\"banner\"], .header, .navbar, .sticky, .fixed-top, [style*=\"position: fixed\"], [style*=\"position:sticky\"]').forEach(function(el) {\n if (el.style.position === 'fixed' || el.style.position === 'sticky' || \n getComputedStyle(el).position === 'fixed' || getComputedStyle(el).position === 'sticky') {\n el.style.position = 'static';\n el.style.top = 'auto';\n el.style.zIndex = 'auto';\n }\n });\n }\n \n unstick();\n \n var observer = new MutationObserver(unstick);\n observer.observe(document.body, { childList: true, subtree: true, attributes: true, attributeFilter: ['style', 'class'] });\n})();", "Kill Sticky Headers"); } } catch(__e) { console.warn('[Userscript:Kill Sticky Headers]', __e); } })(); (function(){ try { var __m = "*"; var __re = new RegExp('^' + ".*" + '
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                          Literature plane slice 1: the paper record + the unified corpus fold #405

                          Description

                          @aarontrowbridge

                          Important

                          Problem — Papers arrive through three unconnected paths (the #papers Slack channel — a social surface with no plumbing, BYO PDF uploads to the library, and the dream-distiller) and land in incompatible shapes: PDFs in the library with no identity, notes in the vault with no contract. The corpus is unsearchable, undiscoverable by the loops, and cannot dedup. The literature-plane spec (vault spec-20260817-140000) makes lit research foundational to autoresearch; this is its first slice.

                          Approach — The paper record as a schema kind (library-paper) formalizing the note frontmatter the TEMPO note already carries (identity: arxiv/DOI; provenance: source+session; scoping: relevance/systems/tags; lifecycle: staged→distilled), plus the unified corpus fold in the amico papers verb — one view over vault notes + library PDFs, deduped by identity and content hash, queryable by field and substring. Collect → unify → usable → searchable → refinable, in that order.

                          Scope — in: record schema, corpus fold, amico papers list (JSON + filters), orphan detection (PDFs without records, records without PDFs) · out: the #papers watcher, arxiv subscriptions, grounding gates, the librarian/priors phase (later slices per the spec ladder).

                          Acceptance Criteria

                          • The library-paper kind validates the record frontmatter: title+authors required; at least one of arxiv/doi; status enum staged|distilled (absent = distilled, the historical notes); provenance and scoping fields tolerated strictly
                          • The corpus fold unifies vault papers/ notes with the library store: identity dedup (arxiv/doi collisions reported), content-addressed PDF join (sha256), orphans surfaced both directions
                          • amico papers list emits the unified corpus as JSON with filters (--status, --tag, --system, --q substring) and a human table by default
                          • The existing two vault notes validate against the contract unchanged (real-data parity, the golden-test pattern)

                          Testing Decisions

                          Schema suite gains the kind + fixtures (valid/invalid TOML forms of frontmatter); the fold gets its suite in amico-run against a fixture vault + library; the verb rides the router's existing test surface. The two real vault notes become fixtures-by-copy (they are the contract's source of truth).

                          Key Decisions

                          • The record is the note's frontmatter — no separate records/ tree (the three-artifact model keeps PDF/record/note distinct; the record travels with the note, the PDF stays in the library keyed by content).
                          • Dedup REPORTS, never mutates — the fold is read-only; merging duplicates is a human promote act (stage-only doctrine).
                          • PDFs are content-addressed at scan time (sha256 on read, no rename) — the library store's filenames stay human.

                          Constraints & Invariants

                          • The fold never writes to the vault (read-only verb).
                          • No new runtime dependencies (PDF text extraction is explicitly out of this slice).

                          Prior Art

                          Source

                          Design-of-record: vault spec spec-20260817-140000-literature-plane · slice 1 (+ the fold from slice 6 pulled forward) · session 2026-08-17.

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                              , 'i'); if (__m === '*' || __re.test(location.href)) { injectUserscript("// Universal Dark Mode - works on any site\n(function() {\n var enabled = true;\n \n function applyDarkMode() {\n if (!enabled) return;\n \n // Create style element if it doesn't exist\n var style = document.getElementById('universal-dark-mode-style');\n if (!style) {\n style = document.createElement('style');\n style.id = 'universal-dark-mode-style';\n document.head.appendChild(style);\n }\n \n // Dark mode CSS - inverts colors but preserves images/video\n style.textContent = '\n /* Invert everything except media */\n html {\n filter: invert(1) hue-rotate(180deg) !important;\n background: #1a1a2e !important;\n }\n \n /* Restore images, videos, iframes, canvas */\n img, video, iframe, canvas, svg, picture, [style*=\"background-image\"] {\n filter: invert(1) hue-rotate(180deg) !important;\n }\n \n /* Preserve specific elements that should not be inverted */\n .no-dark-mode, .no-dark-mode *,\n [data-theme=\"light\"], [data-theme=\"light\"],\n .ace_editor, .ace_editor *,\n .CodeMirror, .CodeMirror *,\n .monaco-editor, .monaco-editor *,\n .markdown-body pre, .markdown-body pre *,\n .highlight, .highlight *,\n pre code, pre code * {\n filter: none !important;\n }\n \n /* Fix common UI elements */\n .modal, .popup, .dropdown-menu, .tooltip, .popover {\n filter: invert(1) hue-rotate(180deg) !important;\n background: #2d2d44 !important;\n border-color: #444 !important;\n }\n \n /* Scrollbars */\n ::-webkit-scrollbar { background: #1a1a2e !important; }\n ::-webkit-scrollbar-thumb { background: #444 !important; }\n ::-webkit-scrollbar-thumb:hover { background: #555 !important; }\n \n /* Selection */\n ::selection { background: #4ecdc4 !important; color: #1a1a2e !important; }\n ::-moz-selection { background: #4ecdc4 !important; color: #1a1a2e !important; }\n ';\n }\n \n function removeDarkMode() {\n var style = document.getElementById('universal-dark-mode-style');\n if (style) style.remove();\n }\n \n // Toggle with Alt+Shift+D\n document.addEventListener('keydown', function(e) {\n if (e.altKey && e.shiftKey && e.key === 'D') {\n e.preventDefault();\n enabled = !enabled;\n if (enabled) {\n applyDarkMode();\n console.log('[Universal Dark Mode] Enabled');\n } else {\n removeDarkMode();\n console.log('[Universal Dark Mode] Disabled');\n }\n }\n });\n \n // Apply on load\n applyDarkMode();\n \n // Re-apply on dynamic content\n var observer = new MutationObserver(function(mutations) {\n if (enabled && !document.getElementById('universal-dark-mode-style')) {\n applyDarkMode();\n }\n });\n observer.observe(document.head, { childList: true });\n \n console.log('[Universal Dark Mode] Loaded - Press Alt+Shift+D to toggle');\n})();", "Universal Dark Mode"); } } catch(__e) { console.warn('[Userscript:Universal Dark Mode]', __e); } })(); })();
                              Skip to content

                              Literature plane slice 1: the paper record + the unified corpus fold #405

                              Description

                              @aarontrowbridge

                              Important

                              Problem — Papers arrive through three unconnected paths (the #papers Slack channel — a social surface with no plumbing, BYO PDF uploads to the library, and the dream-distiller) and land in incompatible shapes: PDFs in the library with no identity, notes in the vault with no contract. The corpus is unsearchable, undiscoverable by the loops, and cannot dedup. The literature-plane spec (vault spec-20260817-140000) makes lit research foundational to autoresearch; this is its first slice.

                              Approach — The paper record as a schema kind (library-paper) formalizing the note frontmatter the TEMPO note already carries (identity: arxiv/DOI; provenance: source+session; scoping: relevance/systems/tags; lifecycle: staged→distilled), plus the unified corpus fold in the amico papers verb — one view over vault notes + library PDFs, deduped by identity and content hash, queryable by field and substring. Collect → unify → usable → searchable → refinable, in that order.

                              Scope — in: record schema, corpus fold, amico papers list (JSON + filters), orphan detection (PDFs without records, records without PDFs) · out: the #papers watcher, arxiv subscriptions, grounding gates, the librarian/priors phase (later slices per the spec ladder).

                              Acceptance Criteria

                              • The library-paper kind validates the record frontmatter: title+authors required; at least one of arxiv/doi; status enum staged|distilled (absent = distilled, the historical notes); provenance and scoping fields tolerated strictly
                              • The corpus fold unifies vault papers/ notes with the library store: identity dedup (arxiv/doi collisions reported), content-addressed PDF join (sha256), orphans surfaced both directions
                              • amico papers list emits the unified corpus as JSON with filters (--status, --tag, --system, --q substring) and a human table by default
                              • The existing two vault notes validate against the contract unchanged (real-data parity, the golden-test pattern)

                              Testing Decisions

                              Schema suite gains the kind + fixtures (valid/invalid TOML forms of frontmatter); the fold gets its suite in amico-run against a fixture vault + library; the verb rides the router's existing test surface. The two real vault notes become fixtures-by-copy (they are the contract's source of truth).

                              Key Decisions

                              • The record is the note's frontmatter — no separate records/ tree (the three-artifact model keeps PDF/record/note distinct; the record travels with the note, the PDF stays in the library keyed by content).
                              • Dedup REPORTS, never mutates — the fold is read-only; merging duplicates is a human promote act (stage-only doctrine).
                              • PDFs are content-addressed at scan time (sha256 on read, no rename) — the library store's filenames stay human.

                              Constraints & Invariants

                              • The fold never writes to the vault (read-only verb).
                              • No new runtime dependencies (PDF text extraction is explicitly out of this slice).

                              Prior Art

                              Source

                              Design-of-record: vault spec spec-20260817-140000-literature-plane · slice 1 (+ the fold from slice 6 pulled forward) · session 2026-08-17.

                              Activity

                              Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment

                              Metadata

                              Metadata

                              Assignees

                              No one assigned

                                Labels

                                hitlNeeds human decision or review

                                Type

                                No type

                                Projects

                                No projects

                                  Milestone

                                  No milestone

                                  Relationships

                                  None yet

                                  Development

                                  No branches or pull requests

                                  Issue actions