HuBMAP Consortium

HuBMAP Data Portal front end

Resources and outputs for aligning legacy metadata with new schema standards through mappings, patches and glossaries

Human Reference Atlas Knowledge Graph

Custom gateway service with auth check for APIs and file assets not hosted with AWS API Gateway

General Documentation For HuBMAP

HRA UIs Monorepo (includes HRA Portal, EUI, RUI, ASCT+B Reporter, and more)

ATAC-seq pipelines for HuBMAP

Data ingest pipeline(s) for QA/metadata etl/post-processing

Docker containers to pre-process data for visualization in the portal

scRNA-seq pipeline using Salmon for quantification