Case study illustrating utility of Monkeybread

This repository implements the analyses carried out in the Monkeybread manuscript that illustrates the utility of Monkeybread for examining a human melanoma spatial transcriptomics sample.

Name		Name	Last commit message	Last commit date
Monkeybread_paper_case_study_further_analysis.ipynb		Monkeybread_paper_case_study_further_analysis.ipynb
Monkeybread_paper_case_study_generate_niches.ipynb		Monkeybread_paper_case_study_generate_niches.ipynb
Monkeybread_paper_label_cells.ipynb		Monkeybread_paper_label_cells.ipynb
README.md		README.md

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