iqtree

piqtree Public

A Python library that exposes features from IQ-TREE - efficient software for phylogenomic inference

Python 51GPL-2.0 9 1 0 Updated Aug 19, 2026

iqtree3 Public

IQ-TREE version 3: software for phylogenetics

C++ 154GPL-2.0 39 59 9 Updated Aug 3, 2026

iqtree.github.io Public

IQ-TREE main website

CSS 2 12 0 4 Updated Jul 22, 2026

iqtree2 Public

IQ-TREE software version 2: phylogenetics by maximum likelihood

C++ 335GPL-2.0 73 112 4 Updated Jul 22, 2026

calibratree Public

Fossil calibation annotation for Bayesian molecular dating 🧬

Jupyter Notebook 3GPL-3.0 0 1 0 Updated Jul 13, 2026

cmaple Public

MAximum Parsimonious Likelihood Estimation in C/C++

C 12GPL-2.0 4 6 1 Updated May 1, 2026

VBayes Public

Variational time tree inference with Graph Neural Networks

Python 1GPL-2.0 0 0 0 Updated Nov 24, 2025

paml Public

C 4GPL-3.0 1 2 0 Updated May 23, 2025

decenttree Public

Fast Neighbor-Joining and other distance-based methods for phylogenetics

C++ 16GPL-2.0 9 5 4 Updated Jun 21, 2024

cmaple_api Public

A Demo of CMaple API documentation

0 0 0 0 Updated May 14, 2024

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