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1. jbloomlab/SARS2-RBD-escape-calcjbloomlab/SARS2-RBD-escape-calcPublic

   SARS-CoV-2 RBD antibody escape calculator

   Jupyter Notebook 13 3

2. jbloomlab/polyclonaljbloomlab/polyclonalPublic

   Model mutational escape from polyclonal antibodies.

   Jupyter Notebook 3

3. jbloomlab/SARS2-mut-fitnessjbloomlab/SARS2-mut-fitnessPublic

   Observed substitution counts of SARS-CoV-2 compared to those expected under the mutation rates

   Jupyter Notebook 22 8

4. jbloomlab/neutcurvejbloomlab/neutcurvePublic

   Fit and plot neutralization curves

   Jupyter Notebook 9 4

5. jbloomlab/dms_variantsjbloomlab/dms_variantsPublic

   Analyze deep mutational scanning of barcoded variants.

   Jupyter Notebook 8 12