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Holiday
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Holiday
248 followers · 137 following

Achievements

Achievement: Starstruckx2Achievement: Pair Extraordinairex4Achievement: Pull Sharkx4Achievement: YOLOAchievement: QuickdrawAchievement: Arctic Code Vault Contributor

Achievements

Achievement: Starstruckx2Achievement: Pair Extraordinairex4Achievement: Pull Sharkx4Achievement: YOLOAchievement: QuickdrawAchievement: Arctic Code Vault Contributor

Highlights

  • Pro

Organizations

@nf-core@SPAAM-community@sidora-tools@poseidon-framework@miaard

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jfy133/README.md

Hi there 👋, my name is James

I am a bioinformatician / research software engineer, specialising in Nextflow pipelines and (ancient) metagenomics

🤖 I like pipelines, metadata, standards, documenting, and community projects!

🧬 My current research focus is currently on improving throughput and reproducibility of (ancient) metagenomic analysis, and developing standards for (meta)data archiving and reporting of ancient DNA sequencing data.

👪 I'm currently a core-team member of the nf-core initative of standardised Nextflow pipelines and I established the SPAAM-community of ancient metagenomics researchers and the MInAS intiative.

Skills

nextflow

r

bioconda

bash

git

linux


Research

orcidgoogle-scholar


Contact

mastodonlinked-inwebsite


Current projects

Static BadgeStatic BadgeStatic BadgeStatic BadgeStatic Badge

See my pinned repositories

Mastodon

Pinned Loading

  1. nf-core/magnf-core/magPublic

    Assembly and binning of metagenomes

    Nextflow 312 155

  2. nf-core/funcscannf-core/funcscanPublic

    (Meta-)genome screening for functional and natural product gene sequences

    Nextflow 117 36

  3. nf-core/taxprofilernf-core/taxprofilerPublic

    Highly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic data

    Nextflow 189 67

  4. nf-core/createtaxdbnf-core/createtaxdbPublic

    Parallelised and automated construction of metagenomic classifier databases of different tools

    Nextflow 22 11

  5. SPAAM-community/AncientMetagenomeDirSPAAM-community/AncientMetagenomeDirPublic

    Repository containing lists of all published ancient metagenomic (and related) samples and libraries

    HTML 85 60

  6. MIxS-MInAS/MInASMIxS-MInAS/MInASPublic

    Repository of proposed and combined MIxS + MInAS standardised metadata checklists using LinkML

    Python 1