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  1. msemsePublic

    Microbial Simulation Environment - A toolbox for the simulation of genome-scale metabolic network reconstructions in the marine environment. A case study with the AMT-13 cruise transect is included

    MATLAB 2

  2. PanGEMPanGEMPublic

    Pangenome-scale metabolic network reconstruction, analysis, and strain-model extraction

    MATLAB 9 3

  3. NutrientUptakeNutrientUptakePublic

    Accompanying code to Casey and Follows, 2020. A flexible and easy-to-use model of microbial acclimation to nutrient availability.

    MATLAB 3

  4. PheArrMePheArrMePublic

    Phenotype array guided GEM gap-filling

    Python 1 1

  5. jrcasey.github.iojrcasey.github.ioPublic

    My Academic Homepage

    Ruby

  6. RSS_AgentRSS_AgentPublic

    Weekly digest of my RSS feeds ranked and filtered based on my interests

    Python 17 2