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junjunlab/README.md

Welcome to my home 👋

Hi, I'm Jun Zhang, a Ph.D at China Pharmaceutical University (CPU). Currently, I'm focusing on NGS (Next-Generation Sequencing) data analysis and actively developing bioinformatics tools. I'm passionate about computational biology and constantly exploring new programming languages and skills including R, Python, Julia, and Linux. With curiosity at heart, I'm also on a personal journey to discover the deeper meaning of life.

I'm currently working in the field of epigenetics and sequencing data analysis. Most of my projects involve working with ATAC-seq, ChIP-seq, MeRIP-seq, and Ribo-seq data to investigate how gene expression is regulated at different layers — from chromatin accessibility to RNA modifications and translation. I love combining wet-lab insight with computational tools to dig deeper into biological questions.

Follow my github

Shiny tools

shiny of ClusterGVisshiny of pheatmapshiny of VennDiagramshiny of volcanoPlotshiny of qPCRshiny of qPCRproshiny of clusterProfilershiny of CountToTPM/FPKM

R packages

riboTransVisORFfinderRbulkPseudotimeJunJunZaimetaplotggSCvisggcirclizeggChIPvisRiboProfilerBioSeqUtilsClusterGVisjjPlotjjAnnotransPlotRGseaVisscRNAtoolVistackPlotR

Python packages

trackPyGetTransToolGetGeneLengthGetTsite

Pinned Loading

  1. omicScopeomicScopePublic

    A Comprehensive and Integrated Framework for Transcriptomic Data Analysis

    R 21

  2. riboTransVisriboTransVisPublic

    A Package for Ribosome Profiling Data Analysis

    R 18 3

  3. ClusterGVisClusterGVisPublic

    One-step to Cluster and Visualize Gene Expression Matrix

    R 388 38

  4. scRNAtoolVisscRNAtoolVisPublic

    Useful functions to make your scRNA-seq plot more cool!

    R 398 35

  5. GseaVisGseaVisPublic

    An implement R package to visualize GSEA results

    R 231 20

  6. jjAnnojjAnnoPublic

    An annotation package for ggplot plot

    R 120 10