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1. Genentech/Perturb-OTGenentech/Perturb-OTPublic

   Cross-modality matching and prediction with labeled Gromov-Wasserstein Optimal Transport.

   Jupyter Notebook 19 4

2. pinellolab/crispr-beanpinellolab/crispr-beanPublic

   Base Editing screens' Activity-Normalized variant effect size estimation

   Python 10 4

3. pinellolab/simbapinellolab/simbaPublic

   SIMBA: SIngle-cell eMBedding Along with features

   Python 66 8

4. literature_reviewer_agentliterature_reviewer_agentPublic

   Concierge agent that does the heavy lifting for your literature review

   Python

5. IGVF-CRISPR/perturb-toolsIGVF-CRISPR/perturb-toolsPublic

   Utility package for bulk/single-cell CRISPR screens

   Jupyter Notebook 8 1

6. pinellolab/simba_pbgpinellolab/simba_pbgPublic

   A customized PyTorch-BigGraph (PBG) package for "simba", modified from https://github.com/facebookresearch/PyTorch-BigGraph

   Python 2