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Pull requests: kbase/index_runner

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Pull requests list

Bump python from 3.9.19-alpine to 3.14.3-alpine dependencies

Pull requests that update a dependency file

docker

Pull requests that update docker code

#284 opened Mar 1, 2026 by dependabotBot

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Bump confluent-kafka from 2.6.1 to 2.13.0 dependencies

Pull requests that update a dependency file

python

Pull requests that update python code

#283 opened Feb 1, 2026 by dependabotBot

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Bump mypy from 0.782 to 1.19.1 dependencies

Pull requests that update a dependency file

python

Pull requests that update python code

#281 opened Jan 1, 2026 by dependabotBot

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Bump actions/checkout from 4 to 6 in /.github/workflows dependencies

Pull requests that update a dependency file

github_actions

Pull requests that update GitHub Actions code

#280 opened Dec 2, 2025 by dependabotBot

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Bump beautifulsoup4 from 4.9.1 to 4.14.3 dependencies

Pull requests that update a dependency file

python

Pull requests that update python code

#279 opened Dec 1, 2025 by dependabotBot

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D->M

#274 opened Oct 8, 2025 by bio-borisContributor

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3 tasks

Bump actions/setup-python from 5 to 6 in /.github/workflows dependencies

Pull requests that update a dependency file

github_actions

Pull requests that update GitHub Actions code

#273 opened Oct 1, 2025 by dependabotBot

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Bump pytest-cov from 4.1.0 to 7.0.0 dependencies

Pull requests that update a dependency file

python

Pull requests that update python code

#270 opened Oct 1, 2025 by dependabotBot

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Bump pyyaml from 5.3.1 to 6.0.3 dependencies

Pull requests that update a dependency file

python

Pull requests that update python code

#269 opened Oct 1, 2025 by dependabotBot

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Bump pytest from 7.4.0 to 8.4.2 dependencies

Pull requests that update a dependency file

python

Pull requests that update python code

#268 opened Oct 1, 2025 by dependabotBot

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Bump jsonschema from 3.2.0 to 4.25.1 dependencies

Pull requests that update a dependency file

python

Pull requests that update python code

#263 opened Sep 2, 2025 by dependabotBot

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Bump requests from 2.24.0 to 2.32.5 dependencies

Pull requests that update a dependency file

python

Pull requests that update python code

#262 opened Sep 2, 2025 by dependabotBot

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Bump bandit from 1.6.2 to 1.8.6 dependencies

Pull requests that update a dependency file

python

Pull requests that update python code

#261 opened Aug 1, 2025 by dependabotBot

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Bump markdown2 from 2.3.9 to 2.5.4 dependencies

Pull requests that update a dependency file

python

Pull requests that update python code

#258 opened Aug 1, 2025 by dependabotBot

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Bump flake8 from 3.8.3 to 7.3.0 dependencies

Pull requests that update a dependency file

python

Pull requests that update python code

#251 opened Jul 1, 2025 by dependabotBot

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Bump the pip group with 6 updates dependencies

Pull requests that update a dependency file

python

Pull requests that update python code

#245 opened May 20, 2025 by dependabotBot

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Bump responses from 0.11.0 to 0.23.1 dependencies

Pull requests that update a dependency file

python

Pull requests that update python code

#241 opened Apr 16, 2025 by dependabotBot

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Bump biopython from 1.77 to 1.85 dependencies

Pull requests that update a dependency file

python

Pull requests that update python code

#240 opened Apr 16, 2025 by dependabotBot

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Bump ipython from 7.34.0 to 8.18.1 dependencies

Pull requests that update a dependency file

python

Pull requests that update python code

#233 opened Apr 16, 2025 by dependabotBot

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Bump docker from 4.2.2 to 5.0.3 dependencies

Pull requests that update a dependency file

python

Pull requests that update python code

#230 opened Apr 16, 2025 by dependabotBot

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Add CodeQL workflow for GitHub code scanning

#223 opened Nov 10, 2022 by lgtm-comBot

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Bump pyyaml from 5.3.1 to 5.4 dependencies

Pull requests that update a dependency file

#215 opened May 16, 2022 by dependabotBot

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Bump pygments from 2.7.3 to 2.7.4 dependencies

Pull requests that update a dependency file

#216 opened May 16, 2022 by dependabotBot

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Bump pywin32 from 300 to 301 dependencies

Pull requests that update a dependency file

#214 opened May 16, 2022 by dependabotBot

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Bump numpy from 1.19.5 to 1.21.0 dependencies

Pull requests that update a dependency file

#212 opened May 16, 2022 by dependabotBot

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