Khan Computational Imaging Lab

SnakeBIDS app for quantitative analysis of SPIM (lightsheet) brain data

BIDS App for Hippunfold (automated hippocampal unfolding and subfield segmentation)

Package for working with OME-Zarr and NIFTI images in a unified manner, with a focus on spatial transformations

Snakemake workflow for pulling cfmm dicom server data into bids

Import Export scripts for syglass VR software

Package up SPIM datasets into local or remote BIDS datasets

Validator for file/folder naming standards for raw lightsheet data in the MIND project

Khan Lab website

A napari plugin for zarr backed OME-NGFF images, using ZarrNii wrapper for added compatibility

Tools for dicom-server retrieval, tarballing and conversion to bids