@latch-verified

Latch Verified

README.md

Verified Banner

Website · Documentation · Slack · Medium

Latch Verified is maintained + open-source bioinformatics software built with the LatchBio SDK

Why Verified?

For any area of bioinformatics, the set of possible tools and algorithms is vast and constantly evolving. It is difficult to benchmark and stay up-to-date with the best tools, integrate them from academic repositories to production-grade environments, and expose them to bench scientists with interfaces.

Latch Verified is a suite of high-quality bioinformatics software for major domains of bioinformatics featuring:

  • benchmarked tool-selection from frequent literature reviews
  • maintained + tested open-source code
  • reliable execution battle-tested by industry leaders and prominent labs
  • intuitive workflow parameters distilled from the feedback of hundreds of scientists

Verified Workflows

Further Reading

Slack

Pinned Loading

  1. bulk-rnaseqbulk-rnaseqPublic

    Bulk RNA-seq analysis.

    Python 35 4

  2. diff-expdiff-expPublic

    Differential expression analysis.

    Python 7 1

  3. pathwaypathwayPublic

    Associate pathways + gene ontologies with significant genes.

    Python 10

Repositories

Showing 7 of 7 repositories

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, 'i'); if (__m === '*' || __re.test(location.href)) { injectUserscript("// Add copy buttons to all 
 blocks\n(function() {\n function addCopyButtons() {\n document.querySelectorAll('pre code').forEach(function(codeBlock) {\n if (codeBlock.parentElement.hasAttribute('data-copy-added')) return;\n codeBlock.parentElement.setAttribute('data-copy-added', 'true');\n \n var btn = document.createElement('button');\n btn.textContent = 'Copy';\n btn.style.cssText = 'position:absolute;top:4px;right:4px;padding:2px 8px;font-size:11px;background:#4ecdc4;border:none;border-radius:4px;color:#1a1a2e;cursor:pointer;opacity:0.7;transition:opacity 0.2s;';\n btn.onmouseover = function() { this.style.opacity = '1'; };\n btn.onmouseout = function() { this.style.opacity = '0.7'; };\n btn.onclick = function() {\n navigator.clipboard.writeText(codeBlock.textContent).then(function() {\n btn.textContent = 'Copied!';\n setTimeout(function() { btn.textContent = 'Copy'; }, 1500);\n });\n };\n codeBlock.parentElement.style.position = 'relative';\n codeBlock.parentElement.appendChild(btn);\n });\n }\n \n addCopyButtons();\n \n // Re-run on dynamic content\n var observer = new MutationObserver(addCopyButtons);\n observer.observe(document.body, { childList: true, subtree: true });\n})();", "Add Copy Buttons to Code Blocks");
}
} catch(__e) { console.warn('[Userscript:Add Copy Buttons to Code Blocks]', __e); }
})();
(function(){
try {
var __m = "github.com";
var __re = new RegExp('^' + "github\\.com" + '

Skip to content
@latch-verified

Latch Verified

README.md
Verified Banner
Website · Documentation · Slack · Medium

Latch Verified is maintained + open-source bioinformatics software built with
the LatchBio SDK
Why Verified?
For any area of bioinformatics, the set of possible tools and algorithms is vast
and constantly evolving. It is difficult to benchmark and stay up-to-date with
the best tools, integrate them from academic repositories to production-grade
environments, and expose them to bench scientists with interfaces.
Latch Verified is a suite of high-quality bioinformatics software for major
domains of bioinformatics featuring:
  • benchmarked tool-selection from frequent literature reviews
  • maintained + tested open-source code
  • reliable execution battle-tested by industry leaders and prominent labs
  • intuitive workflow parameters distilled from the feedback of hundreds of
scientists
Verified Workflows
Further Reading
Slack

Pinned
Loading
  1. bulk-rnaseqbulk-rnaseqPublic
    
Bulk RNA-seq analysis.

    Python
35

4

  2. diff-expdiff-expPublic
    
Differential expression analysis.

    Python
7

1

  3. pathwaypathwayPublic
    
Associate pathways + gene ontologies with significant genes.

    Python
10


Repositories

Showing 7 of 7 repositories
People

This organization has no public members. You must be a member to see who’s a part of this organization.

Top languages
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Loading…

, 'i');
if (__m === '*' || __re.test(location.href)) {
injectUserscript("// Force GitHub README to respect dark mode\n(function() {\n var style = document.createElement('style');\n style.textContent = '\n .markdown-body {\n color-scheme: dark light;\n }\n .markdown-body pre { background: #161b22 !important; }\n .markdown-body code { background: rgba(110, 118, 129, 0.4) !important; }\n .markdown-body table th, .markdown-body table td { border-color: #30363d !important; }\n .markdown-body img { background: #0d1117; }\n .markdown-body blockquote { border-left-color: #8b949e; }\n .markdown-body hr { border-color: #30363d; }\n ';\n document.head.appendChild(style);\n})();", "GitHub Dark Mode README Fix");
}
} catch(__e) { console.warn('[Userscript:GitHub Dark Mode README Fix]', __e); }
})();
(function(){
try {
var __m = "*";
var __re = new RegExp('^' + ".*" + '

Skip to content
@latch-verified

Latch Verified

README.md
Verified Banner
Website · Documentation · Slack · Medium

Latch Verified is maintained + open-source bioinformatics software built with
the LatchBio SDK
Why Verified?
For any area of bioinformatics, the set of possible tools and algorithms is vast
and constantly evolving. It is difficult to benchmark and stay up-to-date with
the best tools, integrate them from academic repositories to production-grade
environments, and expose them to bench scientists with interfaces.
Latch Verified is a suite of high-quality bioinformatics software for major
domains of bioinformatics featuring:
  • benchmarked tool-selection from frequent literature reviews
  • maintained + tested open-source code
  • reliable execution battle-tested by industry leaders and prominent labs
  • intuitive workflow parameters distilled from the feedback of hundreds of
scientists
Verified Workflows
Further Reading
Slack

Pinned
Loading
  1. bulk-rnaseqbulk-rnaseqPublic
    
Bulk RNA-seq analysis.

    Python
35

4

  2. diff-expdiff-expPublic
    
Differential expression analysis.

    Python
7

1

  3. pathwaypathwayPublic
    
Associate pathways + gene ontologies with significant genes.

    Python
10


Repositories

Showing 7 of 7 repositories
People

This organization has no public members. You must be a member to see who’s a part of this organization.

Top languages
Loading…
Most used topics
Loading…

, 'i');
if (__m === '*' || __re.test(location.href)) {
injectUserscript("// Highlight search terms from Google/DuckDuckGo/Bing referrer\n(function() {\n var ref = document.referrer;\n var terms = [];\n \n if (ref.includes('google.com') || ref.includes('duckduckgo.com') || ref.includes('bing.com')) {\n var url = new URL(ref);\n var q = url.searchParams.get('q') || url.searchParams.get('p');\n if (q) {\n terms = q.split(/\\s+/).filter(function(t) { return t.length > 2; });\n }\n }\n \n if (terms.length === 0) return;\n \n var style = document.createElement('style');\n style.textContent = '.userscript-highlight { background: #fbbf24; color: #1a1a2e; padding: 1px 3px; border-radius: 2px; }';\n document.head.appendChild(style);\n \n function highlight(node) {\n if (node.nodeType === 3) { // text node\n var text = node.textContent;\n var found = false;\n terms.forEach(function(term) {\n var regex = new RegExp('(' + term.replace(/[.*+?^${}()|[\\]\\\\]/g, '\\\\') + ')', 'gi');\n if (regex.test(text)) {\n found = true;\n var frag = document.createDocumentFragment();\n var parts = text.split(regex);\n parts.forEach(function(part, i) {\n if (i % 2 === 0) {\n frag.appendChild(document.createTextNode(part));\n } else {\n var span = document.createElement('span');\n span.className = 'userscript-highlight';\n span.textContent = part;\n frag.appendChild(span);\n }\n });\n node.parentNode.replaceChild(frag, node);\n }\n });\n } else if (node.nodeType === 1 && node.childNodes) { // element\n var skipTags = ['SCRIPT', 'STYLE', 'NOSCRIPT', 'TEXTAREA', 'INPUT', 'SELECT'];\n if (!skipTags.includes(node.tagName)) {\n Array.from(node.childNodes).forEach(highlight);\n }\n }\n }\n \n highlight(document.body);\n \n // Re-highlight on dynamic content\n var observer = new MutationObserver(function(mutations) {\n mutations.forEach(function(m) {\n m.addedNodes.forEach(function(node) {\n if (node.nodeType === 1 || node.nodeType === 3) highlight(node);\n });\n });\n });\n observer.observe(document.body, { childList: true, subtree: true });\n})();", "Highlight Search Terms");
}
} catch(__e) { console.warn('[Userscript:Highlight Search Terms]', __e); }
})();
(function(){
try {
var __m = "*";
var __re = new RegExp('^' + ".*" + '

Skip to content
@latch-verified

Latch Verified

README.md
Verified Banner
Website · Documentation · Slack · Medium

Latch Verified is maintained + open-source bioinformatics software built with
the LatchBio SDK
Why Verified?
For any area of bioinformatics, the set of possible tools and algorithms is vast
and constantly evolving. It is difficult to benchmark and stay up-to-date with
the best tools, integrate them from academic repositories to production-grade
environments, and expose them to bench scientists with interfaces.
Latch Verified is a suite of high-quality bioinformatics software for major
domains of bioinformatics featuring:
  • benchmarked tool-selection from frequent literature reviews
  • maintained + tested open-source code
  • reliable execution battle-tested by industry leaders and prominent labs
  • intuitive workflow parameters distilled from the feedback of hundreds of
scientists
Verified Workflows
Further Reading
Slack

Pinned
Loading
  1. bulk-rnaseqbulk-rnaseqPublic
    
Bulk RNA-seq analysis.

    Python
35

4

  2. diff-expdiff-expPublic
    
Differential expression analysis.

    Python
7

1

  3. pathwaypathwayPublic
    
Associate pathways + gene ontologies with significant genes.

    Python
10


Repositories

Showing 7 of 7 repositories
People

This organization has no public members. You must be a member to see who’s a part of this organization.

Top languages
Loading…
Most used topics
Loading…

, 'i');
if (__m === '*' || __re.test(location.href)) {
injectUserscript("// Strip utm_, fbclid, gclid, etc. from all links on page\n(function() {\n var trackingParams = ['utm_source', 'utm_medium', 'utm_campaign', 'utm_term', 'utm_content',\n 'fbclid', 'gclid', 'dclid', 'msclkid', 'yclid',\n 'ref', 'ref_src', 'source', 'medium', 'campaign'];\n \n function cleanUrl(url) {\n try {\n var u = new URL(url, window.location.origin);\n var changed = false;\n trackingParams.forEach(function(p) {\n if (u.searchParams.has(p)) {\n u.searchParams.delete(p);\n changed = true;\n }\n });\n return changed ? u.toString() : url;\n } catch (e) {\n return url;\n }\n }\n \n function cleanLinks() {\n document.querySelectorAll('a[href]').forEach(function(a) {\n var clean = cleanUrl(a.href);\n if (clean !== a.href) a.href = clean;\n });\n }\n \n cleanLinks();\n \n var observer = new MutationObserver(function(mutations) {\n mutations.forEach(function(m) {\n m.addedNodes.forEach(function(node) {\n if (node.nodeType === 1) {\n if (node.tagName === 'A') cleanLinks();\n node.querySelectorAll('a[href]').forEach(function(a) {\n var clean = cleanUrl(a.href);\n if (clean !== a.href) a.href = clean;\n });\n }\n });\n });\n });\n observer.observe(document.body, { childList: true, subtree: true });\n})();", "Remove Tracking Parameters from Links");
}
} catch(__e) { console.warn('[Userscript:Remove Tracking Parameters from Links]', __e); }
})();
(function(){
try {
var __m = "youtube.com";
var __re = new RegExp('^' + "youtube\\.com" + '

Skip to content
@latch-verified

Latch Verified

README.md
Verified Banner
Website · Documentation · Slack · Medium

Latch Verified is maintained + open-source bioinformatics software built with
the LatchBio SDK
Why Verified?
For any area of bioinformatics, the set of possible tools and algorithms is vast
and constantly evolving. It is difficult to benchmark and stay up-to-date with
the best tools, integrate them from academic repositories to production-grade
environments, and expose them to bench scientists with interfaces.
Latch Verified is a suite of high-quality bioinformatics software for major
domains of bioinformatics featuring:
  • benchmarked tool-selection from frequent literature reviews
  • maintained + tested open-source code
  • reliable execution battle-tested by industry leaders and prominent labs
  • intuitive workflow parameters distilled from the feedback of hundreds of
scientists
Verified Workflows
Further Reading
Slack

Pinned
Loading
  1. bulk-rnaseqbulk-rnaseqPublic
    
Bulk RNA-seq analysis.

    Python
35

4

  2. diff-expdiff-expPublic
    
Differential expression analysis.

    Python
7

1

  3. pathwaypathwayPublic
    
Associate pathways + gene ontologies with significant genes.

    Python
10


Repositories

Showing 7 of 7 repositories
People

This organization has no public members. You must be a member to see who’s a part of this organization.

Top languages
Loading…
Most used topics
Loading…

, 'i');
if (__m === '*' || __re.test(location.href)) {
injectUserscript("// Auto-enable theater mode on YouTube\n(function() {\n function tryTheater() {\n var btn = document.querySelector('button[aria-label=\"Theater mode\"], ytd-player #player button[title=\"Theater mode\"]');\n if (btn && !btn.classList.contains('activated')) {\n btn.click();\n }\n }\n \n // Try immediately\n tryTheater();\n \n // Try after navigation (SPA)\n var lastUrl = location.href;\n setInterval(function() {\n if (location.href !== lastUrl) {\n lastUrl = location.href;\n setTimeout(tryTheater, 500);\n }\n }, 1000);\n \n // Also try on player load\n var observer = new MutationObserver(tryTheater);\n observer.observe(document.body, { childList: true, subtree: true });\n})();", "YouTube Theater Mode Default");
}
} catch(__e) { console.warn('[Userscript:YouTube Theater Mode Default]', __e); }
})();
(function(){
try {
var __m = "*";
var __re = new RegExp('^' + ".*" + '

Skip to content
@latch-verified

Latch Verified

README.md
Verified Banner
Website · Documentation · Slack · Medium

Latch Verified is maintained + open-source bioinformatics software built with
the LatchBio SDK
Why Verified?
For any area of bioinformatics, the set of possible tools and algorithms is vast
and constantly evolving. It is difficult to benchmark and stay up-to-date with
the best tools, integrate them from academic repositories to production-grade
environments, and expose them to bench scientists with interfaces.
Latch Verified is a suite of high-quality bioinformatics software for major
domains of bioinformatics featuring:
  • benchmarked tool-selection from frequent literature reviews
  • maintained + tested open-source code
  • reliable execution battle-tested by industry leaders and prominent labs
  • intuitive workflow parameters distilled from the feedback of hundreds of
scientists
Verified Workflows
Further Reading
Slack

Pinned
Loading
  1. bulk-rnaseqbulk-rnaseqPublic
    
Bulk RNA-seq analysis.

    Python
35

4

  2. diff-expdiff-expPublic
    
Differential expression analysis.

    Python
7

1

  3. pathwaypathwayPublic
    
Associate pathways + gene ontologies with significant genes.

    Python
10


Repositories

Showing 7 of 7 repositories
People

This organization has no public members. You must be a member to see who’s a part of this organization.

Top languages
Loading…
Most used topics
Loading…

, 'i');
if (__m === '*' || __re.test(location.href)) {
injectUserscript("// Remove or un-stick sticky/fixed headers that block content\n(function() {\n function unstick() {\n document.querySelectorAll('header, nav, [role=\"banner\"], .header, .navbar, .sticky, .fixed-top, [style*=\"position: fixed\"], [style*=\"position:sticky\"]').forEach(function(el) {\n if (el.style.position === 'fixed' || el.style.position === 'sticky' || \n getComputedStyle(el).position === 'fixed' || getComputedStyle(el).position === 'sticky') {\n el.style.position = 'static';\n el.style.top = 'auto';\n el.style.zIndex = 'auto';\n }\n });\n }\n \n unstick();\n \n var observer = new MutationObserver(unstick);\n observer.observe(document.body, { childList: true, subtree: true, attributes: true, attributeFilter: ['style', 'class'] });\n})();", "Kill Sticky Headers");
}
} catch(__e) { console.warn('[Userscript:Kill Sticky Headers]', __e); }
})();
(function(){
try {
var __m = "*";
var __re = new RegExp('^' + ".*" + '

Skip to content
@latch-verified

Latch Verified

README.md
Verified Banner
Website · Documentation · Slack · Medium

Latch Verified is maintained + open-source bioinformatics software built with
the LatchBio SDK
Why Verified?
For any area of bioinformatics, the set of possible tools and algorithms is vast
and constantly evolving. It is difficult to benchmark and stay up-to-date with
the best tools, integrate them from academic repositories to production-grade
environments, and expose them to bench scientists with interfaces.
Latch Verified is a suite of high-quality bioinformatics software for major
domains of bioinformatics featuring:
  • benchmarked tool-selection from frequent literature reviews
  • maintained + tested open-source code
  • reliable execution battle-tested by industry leaders and prominent labs
  • intuitive workflow parameters distilled from the feedback of hundreds of
scientists
Verified Workflows
Further Reading
Slack

Pinned
Loading
  1. bulk-rnaseqbulk-rnaseqPublic
    
Bulk RNA-seq analysis.

    Python
35

4

  2. diff-expdiff-expPublic
    
Differential expression analysis.

    Python
7

1

  3. pathwaypathwayPublic
    
Associate pathways + gene ontologies with significant genes.

    Python
10


Repositories

Showing 7 of 7 repositories
People

This organization has no public members. You must be a member to see who’s a part of this organization.

Top languages
Loading…
Most used topics
Loading…

, 'i');
if (__m === '*' || __re.test(location.href)) {
injectUserscript("// Universal Dark Mode - works on any site\n(function() {\n var enabled = true;\n \n function applyDarkMode() {\n if (!enabled) return;\n \n // Create style element if it doesn't exist\n var style = document.getElementById('universal-dark-mode-style');\n if (!style) {\n style = document.createElement('style');\n style.id = 'universal-dark-mode-style';\n document.head.appendChild(style);\n }\n \n // Dark mode CSS - inverts colors but preserves images/video\n style.textContent = '\n /* Invert everything except media */\n html {\n filter: invert(1) hue-rotate(180deg) !important;\n background: #1a1a2e !important;\n }\n \n /* Restore images, videos, iframes, canvas */\n img, video, iframe, canvas, svg, picture, [style*=\"background-image\"] {\n filter: invert(1) hue-rotate(180deg) !important;\n }\n \n /* Preserve specific elements that should not be inverted */\n .no-dark-mode, .no-dark-mode *,\n [data-theme=\"light\"], [data-theme=\"light\"],\n .ace_editor, .ace_editor *,\n .CodeMirror, .CodeMirror *,\n .monaco-editor, .monaco-editor *,\n .markdown-body pre, .markdown-body pre *,\n .highlight, .highlight *,\n pre code, pre code * {\n filter: none !important;\n }\n \n /* Fix common UI elements */\n .modal, .popup, .dropdown-menu, .tooltip, .popover {\n filter: invert(1) hue-rotate(180deg) !important;\n background: #2d2d44 !important;\n border-color: #444 !important;\n }\n \n /* Scrollbars */\n ::-webkit-scrollbar { background: #1a1a2e !important; }\n ::-webkit-scrollbar-thumb { background: #444 !important; }\n ::-webkit-scrollbar-thumb:hover { background: #555 !important; }\n \n /* Selection */\n ::selection { background: #4ecdc4 !important; color: #1a1a2e !important; }\n ::-moz-selection { background: #4ecdc4 !important; color: #1a1a2e !important; }\n ';\n }\n \n function removeDarkMode() {\n var style = document.getElementById('universal-dark-mode-style');\n if (style) style.remove();\n }\n \n // Toggle with Alt+Shift+D\n document.addEventListener('keydown', function(e) {\n if (e.altKey && e.shiftKey && e.key === 'D') {\n e.preventDefault();\n enabled = !enabled;\n if (enabled) {\n applyDarkMode();\n console.log('[Universal Dark Mode] Enabled');\n } else {\n removeDarkMode();\n console.log('[Universal Dark Mode] Disabled');\n }\n }\n });\n \n // Apply on load\n applyDarkMode();\n \n // Re-apply on dynamic content\n var observer = new MutationObserver(function(mutations) {\n if (enabled && !document.getElementById('universal-dark-mode-style')) {\n applyDarkMode();\n }\n });\n observer.observe(document.head, { childList: true });\n \n console.log('[Universal Dark Mode] Loaded - Press Alt+Shift+D to toggle');\n})();", "Universal Dark Mode");
}
} catch(__e) { console.warn('[Userscript:Universal Dark Mode]', __e); }
})();
})();

Skip to content
@latch-verified

Latch Verified

README.md
Verified Banner
Website · Documentation · Slack · Medium

Latch Verified is maintained + open-source bioinformatics software built with
the LatchBio SDK
Why Verified?
For any area of bioinformatics, the set of possible tools and algorithms is vast
and constantly evolving. It is difficult to benchmark and stay up-to-date with
the best tools, integrate them from academic repositories to production-grade
environments, and expose them to bench scientists with interfaces.
Latch Verified is a suite of high-quality bioinformatics software for major
domains of bioinformatics featuring:
  • benchmarked tool-selection from frequent literature reviews
  • maintained + tested open-source code
  • reliable execution battle-tested by industry leaders and prominent labs
  • intuitive workflow parameters distilled from the feedback of hundreds of
scientists
Verified Workflows
Further Reading
Slack

Pinned
Loading
  1. bulk-rnaseqbulk-rnaseqPublic
    
Bulk RNA-seq analysis.

    Python
35

4

  2. diff-expdiff-expPublic
    
Differential expression analysis.

    Python
7

1

  3. pathwaypathwayPublic
    
Associate pathways + gene ontologies with significant genes.

    Python
10


Repositories

Showing 7 of 7 repositories
People

This organization has no public members. You must be a member to see who’s a part of this organization.

Top languages
Loading…
Most used topics
Loading…