Šikić lab

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1. herro herroPublic

   HERRO is a highly-accurate, haplotype-aware, deep-learning tool for error correction of Nanopore R10.4.1 or R9.4.1 reads (read length of >= 10 kbps is recommended).

   Rust 260 17

2. racon raconPublic

   Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads

   C++ 242 33

3. raven ravenPublic

   De novo genome assembler for long uncorrected reads

   C++ 232 19

4. RiNALMo RiNALMoPublic

   RiboNucleic Acid (RNA) Language Model

   Python 172 42

5. graphmap2 graphmap2Public

   Forked from isovic/graphmap

   GraphMap - A highly sensitive and accurate mapper for long, error-prone reads http://www.nature.com/ncomms/2016/160415/ncomms11307/full/ncomms11307.html https://www.biorxiv.org/content/10.1101/7204…

   C++ 68 4

6. GNNome GNNomePublic

   A framework for training graph neural networks to untangle assembly graphs obtained from OLC-based de novo genome assemblers.

   Python 52 8