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1. genesisgenesisPublic

   A library for working with phylogenetic and population genetic data.

   C++ 67 14

2. gappagappaPublic

   A toolkit for analyzing and visualizing phylogenetic placement data

   C++ 65 7

3. grenedalfgrenedalfPublic

   Toolkit for Population Genetic Statistics from Pool-Sequenced Samples, e.g., in Evolve and Resequence experiments

   C++ 51 5

4. moiexpositoalonsolab/grenepipemoiexpositoalonsolab/grenepipePublic

   A flexible, scalable, and reproducible pipeline to automate variant calling from raw sequence reads, with lots of bells and whistles - for sampled individuals, and for pool sequencing.

   Python 118 26

5. torognes/swarmtorognes/swarmPublic

   A robust and fast clustering method for amplicon-based studies

   C++ 148 24

6. petrov-lab/HAFpipe-linepetrov-lab/HAFpipe-linePublic

   calculate haplotype-derived allele frequencies for pool-seq samples

   Shell 8 1