Lerdrup Lab

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1. ew-qctrimalign ew-qctrimalignPublic

   nf-core pipeline to process short read sequencing data optimized for picoChIP-seq experiments.

   Nextflow

2. visualizations visualizationsPublic

   Collection of r-scripts for visalization

   R

3. rnaseq rnaseqPublic

   Forked from nf-core/rnaseq

   RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.

   Nextflow

4. differentialabundance differentialabundancePublic

   Forked from nf-core/differentialabundance

   Differential abundance analysis for feature/ observation matrices from platforms such as RNA-seq

   Nextflow

5. sra_scripts sra_scriptsPublic

   Forked from erkutilaslan/sra_scripts

   general purpose scripts for sratools workflows

   Shell

6. hpc_scripts hpc_scriptsPublic

   Forked from erkutilaslan/hpc_scripts

   general purpose scripts for hpc workflows

   Shell