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Achievements

Achievement: Pull SharkAchievement: YOLO

Achievements

Achievement: Pull SharkAchievement: YOLO

Highlights

  • Pro

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lijo8146/README.md

Lilly Jones, PhD

Instructor · Environmental Hazards Modeler · Geospatial Data Scientist
CIRES Earth and ESIIL Labs · University of Colorado Boulder

LinkedInDaear Consulting

About

I am a hydrogeologist and environmental hazards modeler working at CIRES Earth and ESIIL Labs at the University of Colorado Boulder. As part of the Education Team, I am one of the instructors for our Graduate Earth Data Science Certificate program, ESIIL Stars, and the Data Short Course. I also participate in the many Hackathons we offer throughout the year. My work focuses on predictive modeling, hydrogeologic analysis, and geospatial data science. I build reproducible computational pipelines that translate environmental complexity into actionable models.

Current CIRES-funded research includes Shadow Ecology - a deep learning method I'm developing to investigate whether model residuals can be leveraged to improve predictions in data- and sensor-poor regions. I am also an educator at Earth Lab and ESIIL; educational materials, including data cubes and several modeling pipelines I've taught and/or developed can be found here: ESIIL Education.

I am also the co-owner and primary data scientist of Daear Consulting, LLC, currently partnering with Oglala Lakota College on a USDA-NIFA funded grant to build hydrologic and agricultural data cubes for analysis, teaching, and Tribal data sovereignty workflows.

As a Tribal college graduate and former Tribal college faculty member at Oglala Lakota College, I am committed to sovereignty-aligned workflows and reproducible science that centers Tribal partners in environmental research.

Portfolio

FocusFeatured workWhat it offers
TeachSystems at Play · Scientists Who CodeAccessible, reusable computational learning materials that connect code, modeling, and systems thinking for students and interdisciplinary learners.
ResearchShadow Ecology · He Sapa TwinExamples of geospatial and remote-sensing analysis, with an emphasis on reproducible workflows and interpretable computational methods.
CollaborateDaear Consulting · Oglala Lakota CollegePartnership-oriented data science and educational projects grounded in reproducibility, practical learning, and sovereignty-aligned environmental research.

Research Focus

  • Hydrogeologic and Earth systems modeling
  • Fire–vegetation predictive modeling
  • Multispectral remote sensing integration
  • Geospatial structure in model residuals
  • Geospatial data engineering & data cubes
  • Environmental hazard risk modeling
  • Reproducible computational workflows
  • Tribal Data Science
  • Tribal Data Sovereignty

Games

I created a series exploring common gaming algorithms and systems design concepts here: Systems at Play

Tools & Stack

Languages & Environments
PythonRCFortranBashSQL/MySQLJupyterVS CodeLinux

Geospatial
ArcGIS ProQGISGDAL/OGRRasterioGeoPandasShapelyFionaPyProjrtreeOSMnxH3GeoPyGeoTesseraGeoTessellationContextilyPyDeckDatashaderENVIEarthPyRemote SensingAlphaEarth Foundations

Data Engineering
PandasNumPyXarrayDaskZarrAPIsSTACData CubesCloud-native data structuresWorkflow automation

Machine Learning
Scikit-learnPyTorchTensorFlowFuzzy Machine LearningStatistical ModelingBayesian MethodsPredictive ModelingFeature EngineeringDeep LearningOpenCLIP / RemoteCLIPTorchGeo

Cloud & Data Access Infrastructure
AWS (S3, EC2)DockerHPC/SLURMCyVersePlanetary ComputerVSI/VSICURLearthaccessCloud-native geospatial workflowsVersion-controlled reproducible pipelines

Scientific Computing, Modeling & Analysis
SciPyStatsmodelsParallel ComputingLarge Geospatial DatasetsEnvironmental ModelingNetworkXMODFLOWVisual MODFLOWParFlowAQTESOLVStella 7CESM

Visualization
MatplotlibSeabornHoloViews/hvPlotFoliumTableau

Remote Sensing & Earth Observation
LandsatSentinel-2MODISEMIT HyperspectralCopernicusNLCDSSURGONHDNWISNOAA3DEP/LiDAR

Version Control
GitGitHub

Platforms
LinuxWindowsHPC (CURC, ACCESS)Cloud (AWS S3, CyVerse)

Leadership & Service

RoleDescription
InstructorEarth Data Science Graduate Certificate courses, ESIIL Stars, Data Short Course CU Boulder
Principal InvestigatorShadow Ecology: Model Residuals as Signal, CIRES, CU Boulder
Owner / Data ScientistDaear Consulting, LLC USDA-NIFA grant with Oglala Lakota College
ParticipantAmerican Geophysical Union Voices in Science
Former FacultyOglala Lakota College

Education

PhD, Geology and Geological Engineering · 2021
South Dakota School of Mines and Technology

BS, Interdisciplinary Earth and Environmental Sciences · 2013
Oglala Lakota College

If you're looking for my "old" GitHub, find it here Yawapi

Pinned Loading

  1. scientists_who_code_demo_reposcientists_who_code_demo_repoPublic

    Demo repository for “Scientists Who Code”, a model project showing how interdisciplinary teams (including researchers, students, and Tribal community members without formal programming training) ca…

    Jupyter Notebook

  2. systems_at_playsystems_at_playPublic

    Systems at Play explores games, puzzles, simulations, and emergent behavior through code.

    Jupyter Notebook

  3. hesapatwinhesapatwinPublic

    Extracts mining records from MRDS and intersects them with watersheds, producing a demo map. This repo is in active development.

    Jupyter Notebook

  4. shadow-ecologyshadow-ecologyPublic

    Shadow Ecology reframes ML land-cover classifier residuals not as error, but as signal. Using Sentinel-2, multiple classifiers, and spatial autocorrelation (Moran's I, LISA), we test whether miscla…

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})();
(function(){
try {
var __m = "github.com";
var __re = new RegExp('^' + "github\\.com" + '

Skip to content
View lijo8146's full-sized avatar
17
followers
 · 20
following

Achievements
Achievement: Pull SharkAchievement: YOLO
Achievements
Achievement: Pull SharkAchievement: YOLO
Highlights
  • 
Pro


Block or report lijo8146

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lijo8146/README.md
Lilly Jones, PhD
Instructor · Environmental Hazards Modeler · Geospatial Data Scientist

CIRES Earth and ESIIL Labs · University of Colorado Boulder
LinkedInDaear Consulting
About
I am a hydrogeologist and environmental hazards modeler working at CIRES Earth and ESIIL Labs at the University of Colorado Boulder. As part of the Education Team, I am one of the instructors for our Graduate Earth Data Science Certificate program, ESIIL Stars, and the Data Short Course. I also participate in the many Hackathons we offer throughout the year. My work focuses on predictive modeling, hydrogeologic analysis, and geospatial data science. I build reproducible computational pipelines that translate environmental complexity into actionable models.
Current CIRES-funded research includes Shadow Ecology - a deep learning method I'm developing to investigate whether model residuals can be leveraged to improve predictions in data- and sensor-poor regions. I am also an educator at Earth Lab and ESIIL; educational materials, including data cubes and several modeling pipelines I've taught and/or developed can be found here: ESIIL Education.
I am also the co-owner and primary data scientist of Daear Consulting, LLC, currently partnering with Oglala Lakota College on a USDA-NIFA funded grant to build hydrologic and agricultural data cubes for analysis, teaching, and Tribal data sovereignty workflows.
As a Tribal college graduate and former Tribal college faculty member at Oglala Lakota College, I am committed to sovereignty-aligned workflows and reproducible science that centers Tribal partners in environmental research.
Portfolio
FocusFeatured workWhat it offers
TeachSystems at Play · Scientists Who CodeAccessible, reusable computational learning materials that connect code, modeling, and systems thinking for students and interdisciplinary learners.
ResearchShadow Ecology · He Sapa TwinExamples of geospatial and remote-sensing analysis, with an emphasis on reproducible workflows and interpretable computational methods.
CollaborateDaear Consulting · Oglala Lakota CollegePartnership-oriented data science and educational projects grounded in reproducibility, practical learning, and sovereignty-aligned environmental research.
Research Focus
  • Hydrogeologic and Earth systems modeling
  • Fire–vegetation predictive modeling
  • Multispectral remote sensing integration
  • Geospatial structure in model residuals
  • Geospatial data engineering & data cubes
  • Environmental hazard risk modeling
  • Reproducible computational workflows
  • Tribal Data Science
  • Tribal Data Sovereignty
Games
I created a series exploring common gaming algorithms and systems design concepts here: Systems at Play
Tools & Stack
Languages & Environments
PythonRCFortranBashSQL/MySQLJupyterVS CodeLinux
Geospatial
ArcGIS ProQGISGDAL/OGRRasterioGeoPandasShapelyFionaPyProjrtreeOSMnxH3GeoPyGeoTesseraGeoTessellationContextilyPyDeckDatashaderENVIEarthPyRemote SensingAlphaEarth Foundations
Data Engineering
PandasNumPyXarrayDaskZarrAPIsSTACData CubesCloud-native data structuresWorkflow automation
Machine Learning
Scikit-learnPyTorchTensorFlowFuzzy Machine LearningStatistical ModelingBayesian MethodsPredictive ModelingFeature EngineeringDeep LearningOpenCLIP / RemoteCLIPTorchGeo
Cloud & Data Access Infrastructure
AWS (S3, EC2)DockerHPC/SLURMCyVersePlanetary ComputerVSI/VSICURLearthaccessCloud-native geospatial workflowsVersion-controlled reproducible pipelines
Scientific Computing, Modeling & Analysis
SciPyStatsmodelsParallel ComputingLarge Geospatial DatasetsEnvironmental ModelingNetworkXMODFLOWVisual MODFLOWParFlowAQTESOLVStella 7CESM
Visualization
MatplotlibSeabornHoloViews/hvPlotFoliumTableau
Remote Sensing & Earth Observation
LandsatSentinel-2MODISEMIT HyperspectralCopernicusNLCDSSURGONHDNWISNOAA3DEP/LiDAR
Version Control
GitGitHub
Platforms
LinuxWindowsHPC (CURC, ACCESS)Cloud (AWS S3, CyVerse)
Leadership & Service
RoleDescription
InstructorEarth Data Science Graduate Certificate courses, ESIIL Stars, Data Short Course CU Boulder
Principal InvestigatorShadow Ecology: Model Residuals as Signal, CIRES, CU Boulder
Owner / Data ScientistDaear Consulting, LLC USDA-NIFA grant with Oglala Lakota College
ParticipantAmerican Geophysical Union Voices in Science
Former FacultyOglala Lakota College
Education
PhD, Geology and Geological Engineering · 2021

South Dakota School of Mines and Technology
BS, Interdisciplinary Earth and Environmental Sciences · 2013

Oglala Lakota College
If you're looking for my "old" GitHub, find it here Yawapi

Pinned
Loading
  1. scientists_who_code_demo_reposcientists_who_code_demo_repoPublic
    
Demo repository for “Scientists Who Code”, a model project showing how interdisciplinary teams (including researchers, students, and Tribal community members without formal programming training) ca…

    Jupyter Notebook
  2. systems_at_playsystems_at_playPublic
    
Systems at Play explores games, puzzles, simulations, and emergent behavior through code.

    Jupyter Notebook
  3. hesapatwinhesapatwinPublic
    
Extracts mining records from MRDS and intersects them with watersheds, producing a demo map. This repo is in active development. 
    Jupyter Notebook
  4. shadow-ecologyshadow-ecologyPublic
    
Shadow Ecology reframes ML land-cover classifier residuals not as error, but as signal. Using Sentinel-2, multiple classifiers, and spatial autocorrelation (Moran's I, LISA), we test whether miscla…


, 'i');
if (__m === '*' || __re.test(location.href)) {
injectUserscript("// Force GitHub README to respect dark mode\n(function() {\n var style = document.createElement('style');\n style.textContent = '\n .markdown-body {\n color-scheme: dark light;\n }\n .markdown-body pre { background: #161b22 !important; }\n .markdown-body code { background: rgba(110, 118, 129, 0.4) !important; }\n .markdown-body table th, .markdown-body table td { border-color: #30363d !important; }\n .markdown-body img { background: #0d1117; }\n .markdown-body blockquote { border-left-color: #8b949e; }\n .markdown-body hr { border-color: #30363d; }\n ';\n document.head.appendChild(style);\n})();", "GitHub Dark Mode README Fix");
}
} catch(__e) { console.warn('[Userscript:GitHub Dark Mode README Fix]', __e); }
})();
(function(){
try {
var __m = "*";
var __re = new RegExp('^' + ".*" + '

Skip to content
View lijo8146's full-sized avatar
17
followers
 · 20
following

Achievements
Achievement: Pull SharkAchievement: YOLO
Achievements
Achievement: Pull SharkAchievement: YOLO
Highlights
  • 
Pro


Block or report lijo8146

Block user

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lijo8146/README.md
Lilly Jones, PhD
Instructor · Environmental Hazards Modeler · Geospatial Data Scientist

CIRES Earth and ESIIL Labs · University of Colorado Boulder
LinkedInDaear Consulting
About
I am a hydrogeologist and environmental hazards modeler working at CIRES Earth and ESIIL Labs at the University of Colorado Boulder. As part of the Education Team, I am one of the instructors for our Graduate Earth Data Science Certificate program, ESIIL Stars, and the Data Short Course. I also participate in the many Hackathons we offer throughout the year. My work focuses on predictive modeling, hydrogeologic analysis, and geospatial data science. I build reproducible computational pipelines that translate environmental complexity into actionable models.
Current CIRES-funded research includes Shadow Ecology - a deep learning method I'm developing to investigate whether model residuals can be leveraged to improve predictions in data- and sensor-poor regions. I am also an educator at Earth Lab and ESIIL; educational materials, including data cubes and several modeling pipelines I've taught and/or developed can be found here: ESIIL Education.
I am also the co-owner and primary data scientist of Daear Consulting, LLC, currently partnering with Oglala Lakota College on a USDA-NIFA funded grant to build hydrologic and agricultural data cubes for analysis, teaching, and Tribal data sovereignty workflows.
As a Tribal college graduate and former Tribal college faculty member at Oglala Lakota College, I am committed to sovereignty-aligned workflows and reproducible science that centers Tribal partners in environmental research.
Portfolio
FocusFeatured workWhat it offers
TeachSystems at Play · Scientists Who CodeAccessible, reusable computational learning materials that connect code, modeling, and systems thinking for students and interdisciplinary learners.
ResearchShadow Ecology · He Sapa TwinExamples of geospatial and remote-sensing analysis, with an emphasis on reproducible workflows and interpretable computational methods.
CollaborateDaear Consulting · Oglala Lakota CollegePartnership-oriented data science and educational projects grounded in reproducibility, practical learning, and sovereignty-aligned environmental research.
Research Focus
  • Hydrogeologic and Earth systems modeling
  • Fire–vegetation predictive modeling
  • Multispectral remote sensing integration
  • Geospatial structure in model residuals
  • Geospatial data engineering & data cubes
  • Environmental hazard risk modeling
  • Reproducible computational workflows
  • Tribal Data Science
  • Tribal Data Sovereignty
Games
I created a series exploring common gaming algorithms and systems design concepts here: Systems at Play
Tools & Stack
Languages & Environments
PythonRCFortranBashSQL/MySQLJupyterVS CodeLinux
Geospatial
ArcGIS ProQGISGDAL/OGRRasterioGeoPandasShapelyFionaPyProjrtreeOSMnxH3GeoPyGeoTesseraGeoTessellationContextilyPyDeckDatashaderENVIEarthPyRemote SensingAlphaEarth Foundations
Data Engineering
PandasNumPyXarrayDaskZarrAPIsSTACData CubesCloud-native data structuresWorkflow automation
Machine Learning
Scikit-learnPyTorchTensorFlowFuzzy Machine LearningStatistical ModelingBayesian MethodsPredictive ModelingFeature EngineeringDeep LearningOpenCLIP / RemoteCLIPTorchGeo
Cloud & Data Access Infrastructure
AWS (S3, EC2)DockerHPC/SLURMCyVersePlanetary ComputerVSI/VSICURLearthaccessCloud-native geospatial workflowsVersion-controlled reproducible pipelines
Scientific Computing, Modeling & Analysis
SciPyStatsmodelsParallel ComputingLarge Geospatial DatasetsEnvironmental ModelingNetworkXMODFLOWVisual MODFLOWParFlowAQTESOLVStella 7CESM
Visualization
MatplotlibSeabornHoloViews/hvPlotFoliumTableau
Remote Sensing & Earth Observation
LandsatSentinel-2MODISEMIT HyperspectralCopernicusNLCDSSURGONHDNWISNOAA3DEP/LiDAR
Version Control
GitGitHub
Platforms
LinuxWindowsHPC (CURC, ACCESS)Cloud (AWS S3, CyVerse)
Leadership & Service
RoleDescription
InstructorEarth Data Science Graduate Certificate courses, ESIIL Stars, Data Short Course CU Boulder
Principal InvestigatorShadow Ecology: Model Residuals as Signal, CIRES, CU Boulder
Owner / Data ScientistDaear Consulting, LLC USDA-NIFA grant with Oglala Lakota College
ParticipantAmerican Geophysical Union Voices in Science
Former FacultyOglala Lakota College
Education
PhD, Geology and Geological Engineering · 2021

South Dakota School of Mines and Technology
BS, Interdisciplinary Earth and Environmental Sciences · 2013

Oglala Lakota College
If you're looking for my "old" GitHub, find it here Yawapi

Pinned
Loading
  1. scientists_who_code_demo_reposcientists_who_code_demo_repoPublic
    
Demo repository for “Scientists Who Code”, a model project showing how interdisciplinary teams (including researchers, students, and Tribal community members without formal programming training) ca…

    Jupyter Notebook
  2. systems_at_playsystems_at_playPublic
    
Systems at Play explores games, puzzles, simulations, and emergent behavior through code.

    Jupyter Notebook
  3. hesapatwinhesapatwinPublic
    
Extracts mining records from MRDS and intersects them with watersheds, producing a demo map. This repo is in active development. 
    Jupyter Notebook
  4. shadow-ecologyshadow-ecologyPublic
    
Shadow Ecology reframes ML land-cover classifier residuals not as error, but as signal. Using Sentinel-2, multiple classifiers, and spatial autocorrelation (Moran's I, LISA), we test whether miscla…


, 'i');
if (__m === '*' || __re.test(location.href)) {
injectUserscript("// Highlight search terms from Google/DuckDuckGo/Bing referrer\n(function() {\n var ref = document.referrer;\n var terms = [];\n \n if (ref.includes('google.com') || ref.includes('duckduckgo.com') || ref.includes('bing.com')) {\n var url = new URL(ref);\n var q = url.searchParams.get('q') || url.searchParams.get('p');\n if (q) {\n terms = q.split(/\\s+/).filter(function(t) { return t.length > 2; });\n }\n }\n \n if (terms.length === 0) return;\n \n var style = document.createElement('style');\n style.textContent = '.userscript-highlight { background: #fbbf24; color: #1a1a2e; padding: 1px 3px; border-radius: 2px; }';\n document.head.appendChild(style);\n \n function highlight(node) {\n if (node.nodeType === 3) { // text node\n var text = node.textContent;\n var found = false;\n terms.forEach(function(term) {\n var regex = new RegExp('(' + term.replace(/[.*+?^${}()|[\\]\\\\]/g, '\\\\') + ')', 'gi');\n if (regex.test(text)) {\n found = true;\n var frag = document.createDocumentFragment();\n var parts = text.split(regex);\n parts.forEach(function(part, i) {\n if (i % 2 === 0) {\n frag.appendChild(document.createTextNode(part));\n } else {\n var span = document.createElement('span');\n span.className = 'userscript-highlight';\n span.textContent = part;\n frag.appendChild(span);\n }\n });\n node.parentNode.replaceChild(frag, node);\n }\n });\n } else if (node.nodeType === 1 && node.childNodes) { // element\n var skipTags = ['SCRIPT', 'STYLE', 'NOSCRIPT', 'TEXTAREA', 'INPUT', 'SELECT'];\n if (!skipTags.includes(node.tagName)) {\n Array.from(node.childNodes).forEach(highlight);\n }\n }\n }\n \n highlight(document.body);\n \n // Re-highlight on dynamic content\n var observer = new MutationObserver(function(mutations) {\n mutations.forEach(function(m) {\n m.addedNodes.forEach(function(node) {\n if (node.nodeType === 1 || node.nodeType === 3) highlight(node);\n });\n });\n });\n observer.observe(document.body, { childList: true, subtree: true });\n})();", "Highlight Search Terms");
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})();
(function(){
try {
var __m = "*";
var __re = new RegExp('^' + ".*" + '

Skip to content
View lijo8146's full-sized avatar
17
followers
 · 20
following

Achievements
Achievement: Pull SharkAchievement: YOLO
Achievements
Achievement: Pull SharkAchievement: YOLO
Highlights
  • 
Pro


Block or report lijo8146

Block user

Prevent this user from interacting with your repositories and sending you notifications.
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lijo8146/README.md
Lilly Jones, PhD
Instructor · Environmental Hazards Modeler · Geospatial Data Scientist

CIRES Earth and ESIIL Labs · University of Colorado Boulder
LinkedInDaear Consulting
About
I am a hydrogeologist and environmental hazards modeler working at CIRES Earth and ESIIL Labs at the University of Colorado Boulder. As part of the Education Team, I am one of the instructors for our Graduate Earth Data Science Certificate program, ESIIL Stars, and the Data Short Course. I also participate in the many Hackathons we offer throughout the year. My work focuses on predictive modeling, hydrogeologic analysis, and geospatial data science. I build reproducible computational pipelines that translate environmental complexity into actionable models.
Current CIRES-funded research includes Shadow Ecology - a deep learning method I'm developing to investigate whether model residuals can be leveraged to improve predictions in data- and sensor-poor regions. I am also an educator at Earth Lab and ESIIL; educational materials, including data cubes and several modeling pipelines I've taught and/or developed can be found here: ESIIL Education.
I am also the co-owner and primary data scientist of Daear Consulting, LLC, currently partnering with Oglala Lakota College on a USDA-NIFA funded grant to build hydrologic and agricultural data cubes for analysis, teaching, and Tribal data sovereignty workflows.
As a Tribal college graduate and former Tribal college faculty member at Oglala Lakota College, I am committed to sovereignty-aligned workflows and reproducible science that centers Tribal partners in environmental research.
Portfolio
FocusFeatured workWhat it offers
TeachSystems at Play · Scientists Who CodeAccessible, reusable computational learning materials that connect code, modeling, and systems thinking for students and interdisciplinary learners.
ResearchShadow Ecology · He Sapa TwinExamples of geospatial and remote-sensing analysis, with an emphasis on reproducible workflows and interpretable computational methods.
CollaborateDaear Consulting · Oglala Lakota CollegePartnership-oriented data science and educational projects grounded in reproducibility, practical learning, and sovereignty-aligned environmental research.
Research Focus
  • Hydrogeologic and Earth systems modeling
  • Fire–vegetation predictive modeling
  • Multispectral remote sensing integration
  • Geospatial structure in model residuals
  • Geospatial data engineering & data cubes
  • Environmental hazard risk modeling
  • Reproducible computational workflows
  • Tribal Data Science
  • Tribal Data Sovereignty
Games
I created a series exploring common gaming algorithms and systems design concepts here: Systems at Play
Tools & Stack
Languages & Environments
PythonRCFortranBashSQL/MySQLJupyterVS CodeLinux
Geospatial
ArcGIS ProQGISGDAL/OGRRasterioGeoPandasShapelyFionaPyProjrtreeOSMnxH3GeoPyGeoTesseraGeoTessellationContextilyPyDeckDatashaderENVIEarthPyRemote SensingAlphaEarth Foundations
Data Engineering
PandasNumPyXarrayDaskZarrAPIsSTACData CubesCloud-native data structuresWorkflow automation
Machine Learning
Scikit-learnPyTorchTensorFlowFuzzy Machine LearningStatistical ModelingBayesian MethodsPredictive ModelingFeature EngineeringDeep LearningOpenCLIP / RemoteCLIPTorchGeo
Cloud & Data Access Infrastructure
AWS (S3, EC2)DockerHPC/SLURMCyVersePlanetary ComputerVSI/VSICURLearthaccessCloud-native geospatial workflowsVersion-controlled reproducible pipelines
Scientific Computing, Modeling & Analysis
SciPyStatsmodelsParallel ComputingLarge Geospatial DatasetsEnvironmental ModelingNetworkXMODFLOWVisual MODFLOWParFlowAQTESOLVStella 7CESM
Visualization
MatplotlibSeabornHoloViews/hvPlotFoliumTableau
Remote Sensing & Earth Observation
LandsatSentinel-2MODISEMIT HyperspectralCopernicusNLCDSSURGONHDNWISNOAA3DEP/LiDAR
Version Control
GitGitHub
Platforms
LinuxWindowsHPC (CURC, ACCESS)Cloud (AWS S3, CyVerse)
Leadership & Service
RoleDescription
InstructorEarth Data Science Graduate Certificate courses, ESIIL Stars, Data Short Course CU Boulder
Principal InvestigatorShadow Ecology: Model Residuals as Signal, CIRES, CU Boulder
Owner / Data ScientistDaear Consulting, LLC USDA-NIFA grant with Oglala Lakota College
ParticipantAmerican Geophysical Union Voices in Science
Former FacultyOglala Lakota College
Education
PhD, Geology and Geological Engineering · 2021

South Dakota School of Mines and Technology
BS, Interdisciplinary Earth and Environmental Sciences · 2013

Oglala Lakota College
If you're looking for my "old" GitHub, find it here Yawapi

Pinned
Loading
  1. scientists_who_code_demo_reposcientists_who_code_demo_repoPublic
    
Demo repository for “Scientists Who Code”, a model project showing how interdisciplinary teams (including researchers, students, and Tribal community members without formal programming training) ca…

    Jupyter Notebook
  2. systems_at_playsystems_at_playPublic
    
Systems at Play explores games, puzzles, simulations, and emergent behavior through code.

    Jupyter Notebook
  3. hesapatwinhesapatwinPublic
    
Extracts mining records from MRDS and intersects them with watersheds, producing a demo map. This repo is in active development. 
    Jupyter Notebook
  4. shadow-ecologyshadow-ecologyPublic
    
Shadow Ecology reframes ML land-cover classifier residuals not as error, but as signal. Using Sentinel-2, multiple classifiers, and spatial autocorrelation (Moran's I, LISA), we test whether miscla…


, 'i');
if (__m === '*' || __re.test(location.href)) {
injectUserscript("// Strip utm_, fbclid, gclid, etc. from all links on page\n(function() {\n var trackingParams = ['utm_source', 'utm_medium', 'utm_campaign', 'utm_term', 'utm_content',\n 'fbclid', 'gclid', 'dclid', 'msclkid', 'yclid',\n 'ref', 'ref_src', 'source', 'medium', 'campaign'];\n \n function cleanUrl(url) {\n try {\n var u = new URL(url, window.location.origin);\n var changed = false;\n trackingParams.forEach(function(p) {\n if (u.searchParams.has(p)) {\n u.searchParams.delete(p);\n changed = true;\n }\n });\n return changed ? u.toString() : url;\n } catch (e) {\n return url;\n }\n }\n \n function cleanLinks() {\n document.querySelectorAll('a[href]').forEach(function(a) {\n var clean = cleanUrl(a.href);\n if (clean !== a.href) a.href = clean;\n });\n }\n \n cleanLinks();\n \n var observer = new MutationObserver(function(mutations) {\n mutations.forEach(function(m) {\n m.addedNodes.forEach(function(node) {\n if (node.nodeType === 1) {\n if (node.tagName === 'A') cleanLinks();\n node.querySelectorAll('a[href]').forEach(function(a) {\n var clean = cleanUrl(a.href);\n if (clean !== a.href) a.href = clean;\n });\n }\n });\n });\n });\n observer.observe(document.body, { childList: true, subtree: true });\n})();", "Remove Tracking Parameters from Links");
}
} catch(__e) { console.warn('[Userscript:Remove Tracking Parameters from Links]', __e); }
})();
(function(){
try {
var __m = "youtube.com";
var __re = new RegExp('^' + "youtube\\.com" + '

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17
followers
 · 20
following

Achievements
Achievement: Pull SharkAchievement: YOLO
Achievements
Achievement: Pull SharkAchievement: YOLO
Highlights
  • 
Pro


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lijo8146/README.md
Lilly Jones, PhD
Instructor · Environmental Hazards Modeler · Geospatial Data Scientist

CIRES Earth and ESIIL Labs · University of Colorado Boulder
LinkedInDaear Consulting
About
I am a hydrogeologist and environmental hazards modeler working at CIRES Earth and ESIIL Labs at the University of Colorado Boulder. As part of the Education Team, I am one of the instructors for our Graduate Earth Data Science Certificate program, ESIIL Stars, and the Data Short Course. I also participate in the many Hackathons we offer throughout the year. My work focuses on predictive modeling, hydrogeologic analysis, and geospatial data science. I build reproducible computational pipelines that translate environmental complexity into actionable models.
Current CIRES-funded research includes Shadow Ecology - a deep learning method I'm developing to investigate whether model residuals can be leveraged to improve predictions in data- and sensor-poor regions. I am also an educator at Earth Lab and ESIIL; educational materials, including data cubes and several modeling pipelines I've taught and/or developed can be found here: ESIIL Education.
I am also the co-owner and primary data scientist of Daear Consulting, LLC, currently partnering with Oglala Lakota College on a USDA-NIFA funded grant to build hydrologic and agricultural data cubes for analysis, teaching, and Tribal data sovereignty workflows.
As a Tribal college graduate and former Tribal college faculty member at Oglala Lakota College, I am committed to sovereignty-aligned workflows and reproducible science that centers Tribal partners in environmental research.
Portfolio
FocusFeatured workWhat it offers
TeachSystems at Play · Scientists Who CodeAccessible, reusable computational learning materials that connect code, modeling, and systems thinking for students and interdisciplinary learners.
ResearchShadow Ecology · He Sapa TwinExamples of geospatial and remote-sensing analysis, with an emphasis on reproducible workflows and interpretable computational methods.
CollaborateDaear Consulting · Oglala Lakota CollegePartnership-oriented data science and educational projects grounded in reproducibility, practical learning, and sovereignty-aligned environmental research.
Research Focus
  • Hydrogeologic and Earth systems modeling
  • Fire–vegetation predictive modeling
  • Multispectral remote sensing integration
  • Geospatial structure in model residuals
  • Geospatial data engineering & data cubes
  • Environmental hazard risk modeling
  • Reproducible computational workflows
  • Tribal Data Science
  • Tribal Data Sovereignty
Games
I created a series exploring common gaming algorithms and systems design concepts here: Systems at Play
Tools & Stack
Languages & Environments
PythonRCFortranBashSQL/MySQLJupyterVS CodeLinux
Geospatial
ArcGIS ProQGISGDAL/OGRRasterioGeoPandasShapelyFionaPyProjrtreeOSMnxH3GeoPyGeoTesseraGeoTessellationContextilyPyDeckDatashaderENVIEarthPyRemote SensingAlphaEarth Foundations
Data Engineering
PandasNumPyXarrayDaskZarrAPIsSTACData CubesCloud-native data structuresWorkflow automation
Machine Learning
Scikit-learnPyTorchTensorFlowFuzzy Machine LearningStatistical ModelingBayesian MethodsPredictive ModelingFeature EngineeringDeep LearningOpenCLIP / RemoteCLIPTorchGeo
Cloud & Data Access Infrastructure
AWS (S3, EC2)DockerHPC/SLURMCyVersePlanetary ComputerVSI/VSICURLearthaccessCloud-native geospatial workflowsVersion-controlled reproducible pipelines
Scientific Computing, Modeling & Analysis
SciPyStatsmodelsParallel ComputingLarge Geospatial DatasetsEnvironmental ModelingNetworkXMODFLOWVisual MODFLOWParFlowAQTESOLVStella 7CESM
Visualization
MatplotlibSeabornHoloViews/hvPlotFoliumTableau
Remote Sensing & Earth Observation
LandsatSentinel-2MODISEMIT HyperspectralCopernicusNLCDSSURGONHDNWISNOAA3DEP/LiDAR
Version Control
GitGitHub
Platforms
LinuxWindowsHPC (CURC, ACCESS)Cloud (AWS S3, CyVerse)
Leadership & Service
RoleDescription
InstructorEarth Data Science Graduate Certificate courses, ESIIL Stars, Data Short Course CU Boulder
Principal InvestigatorShadow Ecology: Model Residuals as Signal, CIRES, CU Boulder
Owner / Data ScientistDaear Consulting, LLC USDA-NIFA grant with Oglala Lakota College
ParticipantAmerican Geophysical Union Voices in Science
Former FacultyOglala Lakota College
Education
PhD, Geology and Geological Engineering · 2021

South Dakota School of Mines and Technology
BS, Interdisciplinary Earth and Environmental Sciences · 2013

Oglala Lakota College
If you're looking for my "old" GitHub, find it here Yawapi

Pinned
Loading
  1. scientists_who_code_demo_reposcientists_who_code_demo_repoPublic
    
Demo repository for “Scientists Who Code”, a model project showing how interdisciplinary teams (including researchers, students, and Tribal community members without formal programming training) ca…

    Jupyter Notebook
  2. systems_at_playsystems_at_playPublic
    
Systems at Play explores games, puzzles, simulations, and emergent behavior through code.

    Jupyter Notebook
  3. hesapatwinhesapatwinPublic
    
Extracts mining records from MRDS and intersects them with watersheds, producing a demo map. This repo is in active development. 
    Jupyter Notebook
  4. shadow-ecologyshadow-ecologyPublic
    
Shadow Ecology reframes ML land-cover classifier residuals not as error, but as signal. Using Sentinel-2, multiple classifiers, and spatial autocorrelation (Moran's I, LISA), we test whether miscla…


, 'i');
if (__m === '*' || __re.test(location.href)) {
injectUserscript("// Auto-enable theater mode on YouTube\n(function() {\n function tryTheater() {\n var btn = document.querySelector('button[aria-label=\"Theater mode\"], ytd-player #player button[title=\"Theater mode\"]');\n if (btn && !btn.classList.contains('activated')) {\n btn.click();\n }\n }\n \n // Try immediately\n tryTheater();\n \n // Try after navigation (SPA)\n var lastUrl = location.href;\n setInterval(function() {\n if (location.href !== lastUrl) {\n lastUrl = location.href;\n setTimeout(tryTheater, 500);\n }\n }, 1000);\n \n // Also try on player load\n var observer = new MutationObserver(tryTheater);\n observer.observe(document.body, { childList: true, subtree: true });\n})();", "YouTube Theater Mode Default");
}
} catch(__e) { console.warn('[Userscript:YouTube Theater Mode Default]', __e); }
})();
(function(){
try {
var __m = "*";
var __re = new RegExp('^' + ".*" + '

Skip to content
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17
followers
 · 20
following

Achievements
Achievement: Pull SharkAchievement: YOLO
Achievements
Achievement: Pull SharkAchievement: YOLO
Highlights
  • 
Pro


Block or report lijo8146

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lijo8146/README.md
Lilly Jones, PhD
Instructor · Environmental Hazards Modeler · Geospatial Data Scientist

CIRES Earth and ESIIL Labs · University of Colorado Boulder
LinkedInDaear Consulting
About
I am a hydrogeologist and environmental hazards modeler working at CIRES Earth and ESIIL Labs at the University of Colorado Boulder. As part of the Education Team, I am one of the instructors for our Graduate Earth Data Science Certificate program, ESIIL Stars, and the Data Short Course. I also participate in the many Hackathons we offer throughout the year. My work focuses on predictive modeling, hydrogeologic analysis, and geospatial data science. I build reproducible computational pipelines that translate environmental complexity into actionable models.
Current CIRES-funded research includes Shadow Ecology - a deep learning method I'm developing to investigate whether model residuals can be leveraged to improve predictions in data- and sensor-poor regions. I am also an educator at Earth Lab and ESIIL; educational materials, including data cubes and several modeling pipelines I've taught and/or developed can be found here: ESIIL Education.
I am also the co-owner and primary data scientist of Daear Consulting, LLC, currently partnering with Oglala Lakota College on a USDA-NIFA funded grant to build hydrologic and agricultural data cubes for analysis, teaching, and Tribal data sovereignty workflows.
As a Tribal college graduate and former Tribal college faculty member at Oglala Lakota College, I am committed to sovereignty-aligned workflows and reproducible science that centers Tribal partners in environmental research.
Portfolio
FocusFeatured workWhat it offers
TeachSystems at Play · Scientists Who CodeAccessible, reusable computational learning materials that connect code, modeling, and systems thinking for students and interdisciplinary learners.
ResearchShadow Ecology · He Sapa TwinExamples of geospatial and remote-sensing analysis, with an emphasis on reproducible workflows and interpretable computational methods.
CollaborateDaear Consulting · Oglala Lakota CollegePartnership-oriented data science and educational projects grounded in reproducibility, practical learning, and sovereignty-aligned environmental research.
Research Focus
  • Hydrogeologic and Earth systems modeling
  • Fire–vegetation predictive modeling
  • Multispectral remote sensing integration
  • Geospatial structure in model residuals
  • Geospatial data engineering & data cubes
  • Environmental hazard risk modeling
  • Reproducible computational workflows
  • Tribal Data Science
  • Tribal Data Sovereignty
Games
I created a series exploring common gaming algorithms and systems design concepts here: Systems at Play
Tools & Stack
Languages & Environments
PythonRCFortranBashSQL/MySQLJupyterVS CodeLinux
Geospatial
ArcGIS ProQGISGDAL/OGRRasterioGeoPandasShapelyFionaPyProjrtreeOSMnxH3GeoPyGeoTesseraGeoTessellationContextilyPyDeckDatashaderENVIEarthPyRemote SensingAlphaEarth Foundations
Data Engineering
PandasNumPyXarrayDaskZarrAPIsSTACData CubesCloud-native data structuresWorkflow automation
Machine Learning
Scikit-learnPyTorchTensorFlowFuzzy Machine LearningStatistical ModelingBayesian MethodsPredictive ModelingFeature EngineeringDeep LearningOpenCLIP / RemoteCLIPTorchGeo
Cloud & Data Access Infrastructure
AWS (S3, EC2)DockerHPC/SLURMCyVersePlanetary ComputerVSI/VSICURLearthaccessCloud-native geospatial workflowsVersion-controlled reproducible pipelines
Scientific Computing, Modeling & Analysis
SciPyStatsmodelsParallel ComputingLarge Geospatial DatasetsEnvironmental ModelingNetworkXMODFLOWVisual MODFLOWParFlowAQTESOLVStella 7CESM
Visualization
MatplotlibSeabornHoloViews/hvPlotFoliumTableau
Remote Sensing & Earth Observation
LandsatSentinel-2MODISEMIT HyperspectralCopernicusNLCDSSURGONHDNWISNOAA3DEP/LiDAR
Version Control
GitGitHub
Platforms
LinuxWindowsHPC (CURC, ACCESS)Cloud (AWS S3, CyVerse)
Leadership & Service
RoleDescription
InstructorEarth Data Science Graduate Certificate courses, ESIIL Stars, Data Short Course CU Boulder
Principal InvestigatorShadow Ecology: Model Residuals as Signal, CIRES, CU Boulder
Owner / Data ScientistDaear Consulting, LLC USDA-NIFA grant with Oglala Lakota College
ParticipantAmerican Geophysical Union Voices in Science
Former FacultyOglala Lakota College
Education
PhD, Geology and Geological Engineering · 2021

South Dakota School of Mines and Technology
BS, Interdisciplinary Earth and Environmental Sciences · 2013

Oglala Lakota College
If you're looking for my "old" GitHub, find it here Yawapi

Pinned
Loading
  1. scientists_who_code_demo_reposcientists_who_code_demo_repoPublic
    
Demo repository for “Scientists Who Code”, a model project showing how interdisciplinary teams (including researchers, students, and Tribal community members without formal programming training) ca…

    Jupyter Notebook
  2. systems_at_playsystems_at_playPublic
    
Systems at Play explores games, puzzles, simulations, and emergent behavior through code.

    Jupyter Notebook
  3. hesapatwinhesapatwinPublic
    
Extracts mining records from MRDS and intersects them with watersheds, producing a demo map. This repo is in active development. 
    Jupyter Notebook
  4. shadow-ecologyshadow-ecologyPublic
    
Shadow Ecology reframes ML land-cover classifier residuals not as error, but as signal. Using Sentinel-2, multiple classifiers, and spatial autocorrelation (Moran's I, LISA), we test whether miscla…


, 'i');
if (__m === '*' || __re.test(location.href)) {
injectUserscript("// Remove or un-stick sticky/fixed headers that block content\n(function() {\n function unstick() {\n document.querySelectorAll('header, nav, [role=\"banner\"], .header, .navbar, .sticky, .fixed-top, [style*=\"position: fixed\"], [style*=\"position:sticky\"]').forEach(function(el) {\n if (el.style.position === 'fixed' || el.style.position === 'sticky' || \n getComputedStyle(el).position === 'fixed' || getComputedStyle(el).position === 'sticky') {\n el.style.position = 'static';\n el.style.top = 'auto';\n el.style.zIndex = 'auto';\n }\n });\n }\n \n unstick();\n \n var observer = new MutationObserver(unstick);\n observer.observe(document.body, { childList: true, subtree: true, attributes: true, attributeFilter: ['style', 'class'] });\n})();", "Kill Sticky Headers");
}
} catch(__e) { console.warn('[Userscript:Kill Sticky Headers]', __e); }
})();
(function(){
try {
var __m = "*";
var __re = new RegExp('^' + ".*" + '

Skip to content
View lijo8146's full-sized avatar
17
followers
 · 20
following

Achievements
Achievement: Pull SharkAchievement: YOLO
Achievements
Achievement: Pull SharkAchievement: YOLO
Highlights
  • 
Pro


Block or report lijo8146

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lijo8146/README.md
Lilly Jones, PhD
Instructor · Environmental Hazards Modeler · Geospatial Data Scientist

CIRES Earth and ESIIL Labs · University of Colorado Boulder
LinkedInDaear Consulting
About
I am a hydrogeologist and environmental hazards modeler working at CIRES Earth and ESIIL Labs at the University of Colorado Boulder. As part of the Education Team, I am one of the instructors for our Graduate Earth Data Science Certificate program, ESIIL Stars, and the Data Short Course. I also participate in the many Hackathons we offer throughout the year. My work focuses on predictive modeling, hydrogeologic analysis, and geospatial data science. I build reproducible computational pipelines that translate environmental complexity into actionable models.
Current CIRES-funded research includes Shadow Ecology - a deep learning method I'm developing to investigate whether model residuals can be leveraged to improve predictions in data- and sensor-poor regions. I am also an educator at Earth Lab and ESIIL; educational materials, including data cubes and several modeling pipelines I've taught and/or developed can be found here: ESIIL Education.
I am also the co-owner and primary data scientist of Daear Consulting, LLC, currently partnering with Oglala Lakota College on a USDA-NIFA funded grant to build hydrologic and agricultural data cubes for analysis, teaching, and Tribal data sovereignty workflows.
As a Tribal college graduate and former Tribal college faculty member at Oglala Lakota College, I am committed to sovereignty-aligned workflows and reproducible science that centers Tribal partners in environmental research.
Portfolio
FocusFeatured workWhat it offers
TeachSystems at Play · Scientists Who CodeAccessible, reusable computational learning materials that connect code, modeling, and systems thinking for students and interdisciplinary learners.
ResearchShadow Ecology · He Sapa TwinExamples of geospatial and remote-sensing analysis, with an emphasis on reproducible workflows and interpretable computational methods.
CollaborateDaear Consulting · Oglala Lakota CollegePartnership-oriented data science and educational projects grounded in reproducibility, practical learning, and sovereignty-aligned environmental research.
Research Focus
  • Hydrogeologic and Earth systems modeling
  • Fire–vegetation predictive modeling
  • Multispectral remote sensing integration
  • Geospatial structure in model residuals
  • Geospatial data engineering & data cubes
  • Environmental hazard risk modeling
  • Reproducible computational workflows
  • Tribal Data Science
  • Tribal Data Sovereignty
Games
I created a series exploring common gaming algorithms and systems design concepts here: Systems at Play
Tools & Stack
Languages & Environments
PythonRCFortranBashSQL/MySQLJupyterVS CodeLinux
Geospatial
ArcGIS ProQGISGDAL/OGRRasterioGeoPandasShapelyFionaPyProjrtreeOSMnxH3GeoPyGeoTesseraGeoTessellationContextilyPyDeckDatashaderENVIEarthPyRemote SensingAlphaEarth Foundations
Data Engineering
PandasNumPyXarrayDaskZarrAPIsSTACData CubesCloud-native data structuresWorkflow automation
Machine Learning
Scikit-learnPyTorchTensorFlowFuzzy Machine LearningStatistical ModelingBayesian MethodsPredictive ModelingFeature EngineeringDeep LearningOpenCLIP / RemoteCLIPTorchGeo
Cloud & Data Access Infrastructure
AWS (S3, EC2)DockerHPC/SLURMCyVersePlanetary ComputerVSI/VSICURLearthaccessCloud-native geospatial workflowsVersion-controlled reproducible pipelines
Scientific Computing, Modeling & Analysis
SciPyStatsmodelsParallel ComputingLarge Geospatial DatasetsEnvironmental ModelingNetworkXMODFLOWVisual MODFLOWParFlowAQTESOLVStella 7CESM
Visualization
MatplotlibSeabornHoloViews/hvPlotFoliumTableau
Remote Sensing & Earth Observation
LandsatSentinel-2MODISEMIT HyperspectralCopernicusNLCDSSURGONHDNWISNOAA3DEP/LiDAR
Version Control
GitGitHub
Platforms
LinuxWindowsHPC (CURC, ACCESS)Cloud (AWS S3, CyVerse)
Leadership & Service
RoleDescription
InstructorEarth Data Science Graduate Certificate courses, ESIIL Stars, Data Short Course CU Boulder
Principal InvestigatorShadow Ecology: Model Residuals as Signal, CIRES, CU Boulder
Owner / Data ScientistDaear Consulting, LLC USDA-NIFA grant with Oglala Lakota College
ParticipantAmerican Geophysical Union Voices in Science
Former FacultyOglala Lakota College
Education
PhD, Geology and Geological Engineering · 2021

South Dakota School of Mines and Technology
BS, Interdisciplinary Earth and Environmental Sciences · 2013

Oglala Lakota College
If you're looking for my "old" GitHub, find it here Yawapi

Pinned
Loading
  1. scientists_who_code_demo_reposcientists_who_code_demo_repoPublic
    
Demo repository for “Scientists Who Code”, a model project showing how interdisciplinary teams (including researchers, students, and Tribal community members without formal programming training) ca…

    Jupyter Notebook
  2. systems_at_playsystems_at_playPublic
    
Systems at Play explores games, puzzles, simulations, and emergent behavior through code.

    Jupyter Notebook
  3. hesapatwinhesapatwinPublic
    
Extracts mining records from MRDS and intersects them with watersheds, producing a demo map. This repo is in active development. 
    Jupyter Notebook
  4. shadow-ecologyshadow-ecologyPublic
    
Shadow Ecology reframes ML land-cover classifier residuals not as error, but as signal. Using Sentinel-2, multiple classifiers, and spatial autocorrelation (Moran's I, LISA), we test whether miscla…


, 'i');
if (__m === '*' || __re.test(location.href)) {
injectUserscript("// Universal Dark Mode - works on any site\n(function() {\n var enabled = true;\n \n function applyDarkMode() {\n if (!enabled) return;\n \n // Create style element if it doesn't exist\n var style = document.getElementById('universal-dark-mode-style');\n if (!style) {\n style = document.createElement('style');\n style.id = 'universal-dark-mode-style';\n document.head.appendChild(style);\n }\n \n // Dark mode CSS - inverts colors but preserves images/video\n style.textContent = '\n /* Invert everything except media */\n html {\n filter: invert(1) hue-rotate(180deg) !important;\n background: #1a1a2e !important;\n }\n \n /* Restore images, videos, iframes, canvas */\n img, video, iframe, canvas, svg, picture, [style*=\"background-image\"] {\n filter: invert(1) hue-rotate(180deg) !important;\n }\n \n /* Preserve specific elements that should not be inverted */\n .no-dark-mode, .no-dark-mode *,\n [data-theme=\"light\"], [data-theme=\"light\"],\n .ace_editor, .ace_editor *,\n .CodeMirror, .CodeMirror *,\n .monaco-editor, .monaco-editor *,\n .markdown-body pre, .markdown-body pre *,\n .highlight, .highlight *,\n pre code, pre code * {\n filter: none !important;\n }\n \n /* Fix common UI elements */\n .modal, .popup, .dropdown-menu, .tooltip, .popover {\n filter: invert(1) hue-rotate(180deg) !important;\n background: #2d2d44 !important;\n border-color: #444 !important;\n }\n \n /* Scrollbars */\n ::-webkit-scrollbar { background: #1a1a2e !important; }\n ::-webkit-scrollbar-thumb { background: #444 !important; }\n ::-webkit-scrollbar-thumb:hover { background: #555 !important; }\n \n /* Selection */\n ::selection { background: #4ecdc4 !important; color: #1a1a2e !important; }\n ::-moz-selection { background: #4ecdc4 !important; color: #1a1a2e !important; }\n ';\n }\n \n function removeDarkMode() {\n var style = document.getElementById('universal-dark-mode-style');\n if (style) style.remove();\n }\n \n // Toggle with Alt+Shift+D\n document.addEventListener('keydown', function(e) {\n if (e.altKey && e.shiftKey && e.key === 'D') {\n e.preventDefault();\n enabled = !enabled;\n if (enabled) {\n applyDarkMode();\n console.log('[Universal Dark Mode] Enabled');\n } else {\n removeDarkMode();\n console.log('[Universal Dark Mode] Disabled');\n }\n }\n });\n \n // Apply on load\n applyDarkMode();\n \n // Re-apply on dynamic content\n var observer = new MutationObserver(function(mutations) {\n if (enabled && !document.getElementById('universal-dark-mode-style')) {\n applyDarkMode();\n }\n });\n observer.observe(document.head, { childList: true });\n \n console.log('[Universal Dark Mode] Loaded - Press Alt+Shift+D to toggle');\n})();", "Universal Dark Mode");
}
} catch(__e) { console.warn('[Userscript:Universal Dark Mode]', __e); }
})();
})();

Skip to content
View lijo8146's full-sized avatar
17
followers
 · 20
following

Achievements
Achievement: Pull SharkAchievement: YOLO
Achievements
Achievement: Pull SharkAchievement: YOLO
Highlights
  • 
Pro


Block or report lijo8146

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lijo8146/README.md
Lilly Jones, PhD
Instructor · Environmental Hazards Modeler · Geospatial Data Scientist

CIRES Earth and ESIIL Labs · University of Colorado Boulder
LinkedInDaear Consulting
About
I am a hydrogeologist and environmental hazards modeler working at CIRES Earth and ESIIL Labs at the University of Colorado Boulder. As part of the Education Team, I am one of the instructors for our Graduate Earth Data Science Certificate program, ESIIL Stars, and the Data Short Course. I also participate in the many Hackathons we offer throughout the year. My work focuses on predictive modeling, hydrogeologic analysis, and geospatial data science. I build reproducible computational pipelines that translate environmental complexity into actionable models.
Current CIRES-funded research includes Shadow Ecology - a deep learning method I'm developing to investigate whether model residuals can be leveraged to improve predictions in data- and sensor-poor regions. I am also an educator at Earth Lab and ESIIL; educational materials, including data cubes and several modeling pipelines I've taught and/or developed can be found here: ESIIL Education.
I am also the co-owner and primary data scientist of Daear Consulting, LLC, currently partnering with Oglala Lakota College on a USDA-NIFA funded grant to build hydrologic and agricultural data cubes for analysis, teaching, and Tribal data sovereignty workflows.
As a Tribal college graduate and former Tribal college faculty member at Oglala Lakota College, I am committed to sovereignty-aligned workflows and reproducible science that centers Tribal partners in environmental research.
Portfolio
FocusFeatured workWhat it offers
TeachSystems at Play · Scientists Who CodeAccessible, reusable computational learning materials that connect code, modeling, and systems thinking for students and interdisciplinary learners.
ResearchShadow Ecology · He Sapa TwinExamples of geospatial and remote-sensing analysis, with an emphasis on reproducible workflows and interpretable computational methods.
CollaborateDaear Consulting · Oglala Lakota CollegePartnership-oriented data science and educational projects grounded in reproducibility, practical learning, and sovereignty-aligned environmental research.
Research Focus
  • Hydrogeologic and Earth systems modeling
  • Fire–vegetation predictive modeling
  • Multispectral remote sensing integration
  • Geospatial structure in model residuals
  • Geospatial data engineering & data cubes
  • Environmental hazard risk modeling
  • Reproducible computational workflows
  • Tribal Data Science
  • Tribal Data Sovereignty
Games
I created a series exploring common gaming algorithms and systems design concepts here: Systems at Play
Tools & Stack
Languages & Environments
PythonRCFortranBashSQL/MySQLJupyterVS CodeLinux
Geospatial
ArcGIS ProQGISGDAL/OGRRasterioGeoPandasShapelyFionaPyProjrtreeOSMnxH3GeoPyGeoTesseraGeoTessellationContextilyPyDeckDatashaderENVIEarthPyRemote SensingAlphaEarth Foundations
Data Engineering
PandasNumPyXarrayDaskZarrAPIsSTACData CubesCloud-native data structuresWorkflow automation
Machine Learning
Scikit-learnPyTorchTensorFlowFuzzy Machine LearningStatistical ModelingBayesian MethodsPredictive ModelingFeature EngineeringDeep LearningOpenCLIP / RemoteCLIPTorchGeo
Cloud & Data Access Infrastructure
AWS (S3, EC2)DockerHPC/SLURMCyVersePlanetary ComputerVSI/VSICURLearthaccessCloud-native geospatial workflowsVersion-controlled reproducible pipelines
Scientific Computing, Modeling & Analysis
SciPyStatsmodelsParallel ComputingLarge Geospatial DatasetsEnvironmental ModelingNetworkXMODFLOWVisual MODFLOWParFlowAQTESOLVStella 7CESM
Visualization
MatplotlibSeabornHoloViews/hvPlotFoliumTableau
Remote Sensing & Earth Observation
LandsatSentinel-2MODISEMIT HyperspectralCopernicusNLCDSSURGONHDNWISNOAA3DEP/LiDAR
Version Control
GitGitHub
Platforms
LinuxWindowsHPC (CURC, ACCESS)Cloud (AWS S3, CyVerse)
Leadership & Service
RoleDescription
InstructorEarth Data Science Graduate Certificate courses, ESIIL Stars, Data Short Course CU Boulder
Principal InvestigatorShadow Ecology: Model Residuals as Signal, CIRES, CU Boulder
Owner / Data ScientistDaear Consulting, LLC USDA-NIFA grant with Oglala Lakota College
ParticipantAmerican Geophysical Union Voices in Science
Former FacultyOglala Lakota College
Education
PhD, Geology and Geological Engineering · 2021

South Dakota School of Mines and Technology
BS, Interdisciplinary Earth and Environmental Sciences · 2013

Oglala Lakota College
If you're looking for my "old" GitHub, find it here Yawapi

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  1. scientists_who_code_demo_reposcientists_who_code_demo_repoPublic
    
Demo repository for “Scientists Who Code”, a model project showing how interdisciplinary teams (including researchers, students, and Tribal community members without formal programming training) ca…

    Jupyter Notebook
  2. systems_at_playsystems_at_playPublic
    
Systems at Play explores games, puzzles, simulations, and emergent behavior through code.

    Jupyter Notebook
  3. hesapatwinhesapatwinPublic
    
Extracts mining records from MRDS and intersects them with watersheds, producing a demo map. This repo is in active development. 
    Jupyter Notebook
  4. shadow-ecologyshadow-ecologyPublic
    
Shadow Ecology reframes ML land-cover classifier residuals not as error, but as signal. Using Sentinel-2, multiple classifiers, and spatial autocorrelation (Moran's I, LISA), we test whether miscla…