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LVPP sigma-profile database

DOIDOI

This is the LVPP sigma-profile database for COSMO-based models. It currently contains:

In the latest version, COSMO surface charge densities are computed with NWChem. Previous versions used GAMESS and MOPAC.

You will still need JCOSMO or other software to actually compute activity coefficients or other properties with models like COSMO-RS or COSMO-SAC.

Citing

We kindly ask you to cite this work as:

Using

The processed database is made available in ZIP files, check the releases. Just download one of the release files, uncompress and look for the molecule you need. JCOSMO can be used to view the 3D apparent surface charge densities, sigma-profiles, phase equilibrium calculations and more.

Extending the database

There are different methods to extend the database.

Ask LVPP to add new molecules

Just create and new issue and describe the molecules you need that are missing. If possible, also attach a 3D mol file for each molecule you want added. It can take a while until we process your request.

Process your own molecules

If you can't wait for us to process your molecules (or if you don't want to) you can can process your own molecules.

Just clone or download this repository and then please check the cosmo folder for instructions on how to process your own molecules.

Our instructions are for Ubuntu Linux 24.04 or superior. They should also work on other similar systems.

License

The LVPP sigma-profile database and all the documents distributed in this repository are distributed under the terms of the MIT License.

Releases

Packages

Used by

Contributors

Languages

, 'i'); if (__m === '*' || __re.test(location.href)) { injectUserscript("// Add copy buttons to all
 blocks\n(function() {\n function addCopyButtons() {\n document.querySelectorAll('pre code').forEach(function(codeBlock) {\n if (codeBlock.parentElement.hasAttribute('data-copy-added')) return;\n codeBlock.parentElement.setAttribute('data-copy-added', 'true');\n \n var btn = document.createElement('button');\n btn.textContent = 'Copy';\n btn.style.cssText = 'position:absolute;top:4px;right:4px;padding:2px 8px;font-size:11px;background:#4ecdc4;border:none;border-radius:4px;color:#1a1a2e;cursor:pointer;opacity:0.7;transition:opacity 0.2s;';\n btn.onmouseover = function() { this.style.opacity = '1'; };\n btn.onmouseout = function() { this.style.opacity = '0.7'; };\n btn.onclick = function() {\n navigator.clipboard.writeText(codeBlock.textContent).then(function() {\n btn.textContent = 'Copied!';\n setTimeout(function() { btn.textContent = 'Copy'; }, 1500);\n });\n };\n codeBlock.parentElement.style.position = 'relative';\n codeBlock.parentElement.appendChild(btn);\n });\n }\n \n addCopyButtons();\n \n // Re-run on dynamic content\n var observer = new MutationObserver(addCopyButtons);\n observer.observe(document.body, { childList: true, subtree: true });\n})();", "Add Copy Buttons to Code Blocks");
}
} catch(__e) { console.warn('[Userscript:Add Copy Buttons to Code Blocks]', __e); }
})();
(function(){
try {
var __m = "github.com";
var __re = new RegExp('^' + "github\\.com" + '
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LVPP sigma-profile database

DOIDOI

This is the LVPP sigma-profile database for COSMO-based models. It currently contains:

In the latest version, COSMO surface charge densities are computed with NWChem. Previous versions used GAMESS and MOPAC.

You will still need JCOSMO or other software to actually compute activity coefficients or other properties with models like COSMO-RS or COSMO-SAC.

Citing

We kindly ask you to cite this work as:

Using

The processed database is made available in ZIP files, check the releases. Just download one of the release files, uncompress and look for the molecule you need. JCOSMO can be used to view the 3D apparent surface charge densities, sigma-profiles, phase equilibrium calculations and more.

Extending the database

There are different methods to extend the database.

Ask LVPP to add new molecules

Just create and new issue and describe the molecules you need that are missing. If possible, also attach a 3D mol file for each molecule you want added. It can take a while until we process your request.

Process your own molecules

If you can't wait for us to process your molecules (or if you don't want to) you can can process your own molecules.

Just clone or download this repository and then please check the cosmo folder for instructions on how to process your own molecules.

Our instructions are for Ubuntu Linux 24.04 or superior. They should also work on other similar systems.

License

The LVPP sigma-profile database and all the documents distributed in this repository are distributed under the terms of the MIT License.

Releases

Packages

Used by

Contributors

Languages

, 'i'); if (__m === '*' || __re.test(location.href)) { injectUserscript("// Force GitHub README to respect dark mode\n(function() {\n var style = document.createElement('style');\n style.textContent = '\n .markdown-body {\n color-scheme: dark light;\n }\n .markdown-body pre { background: #161b22 !important; }\n .markdown-body code { background: rgba(110, 118, 129, 0.4) !important; }\n .markdown-body table th, .markdown-body table td { border-color: #30363d !important; }\n .markdown-body img { background: #0d1117; }\n .markdown-body blockquote { border-left-color: #8b949e; }\n .markdown-body hr { border-color: #30363d; }\n ';\n document.head.appendChild(style);\n})();", "GitHub Dark Mode README Fix"); } } catch(__e) { console.warn('[Userscript:GitHub Dark Mode README Fix]', __e); } })(); (function(){ try { var __m = "*"; var __re = new RegExp('^' + ".*" + '
Skip to content

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676 Commits

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NameName
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LVPP sigma-profile database

DOIDOI

This is the LVPP sigma-profile database for COSMO-based models. It currently contains:

In the latest version, COSMO surface charge densities are computed with NWChem. Previous versions used GAMESS and MOPAC.

You will still need JCOSMO or other software to actually compute activity coefficients or other properties with models like COSMO-RS or COSMO-SAC.

Citing

We kindly ask you to cite this work as:

Using

The processed database is made available in ZIP files, check the releases. Just download one of the release files, uncompress and look for the molecule you need. JCOSMO can be used to view the 3D apparent surface charge densities, sigma-profiles, phase equilibrium calculations and more.

Extending the database

There are different methods to extend the database.

Ask LVPP to add new molecules

Just create and new issue and describe the molecules you need that are missing. If possible, also attach a 3D mol file for each molecule you want added. It can take a while until we process your request.

Process your own molecules

If you can't wait for us to process your molecules (or if you don't want to) you can can process your own molecules.

Just clone or download this repository and then please check the cosmo folder for instructions on how to process your own molecules.

Our instructions are for Ubuntu Linux 24.04 or superior. They should also work on other similar systems.

License

The LVPP sigma-profile database and all the documents distributed in this repository are distributed under the terms of the MIT License.

Releases

Packages

Used by

Contributors

Languages

, 'i'); if (__m === '*' || __re.test(location.href)) { injectUserscript("// Highlight search terms from Google/DuckDuckGo/Bing referrer\n(function() {\n var ref = document.referrer;\n var terms = [];\n \n if (ref.includes('google.com') || ref.includes('duckduckgo.com') || ref.includes('bing.com')) {\n var url = new URL(ref);\n var q = url.searchParams.get('q') || url.searchParams.get('p');\n if (q) {\n terms = q.split(/\\s+/).filter(function(t) { return t.length > 2; });\n }\n }\n \n if (terms.length === 0) return;\n \n var style = document.createElement('style');\n style.textContent = '.userscript-highlight { background: #fbbf24; color: #1a1a2e; padding: 1px 3px; border-radius: 2px; }';\n document.head.appendChild(style);\n \n function highlight(node) {\n if (node.nodeType === 3) { // text node\n var text = node.textContent;\n var found = false;\n terms.forEach(function(term) {\n var regex = new RegExp('(' + term.replace(/[.*+?^${}()|[\\]\\\\]/g, '\\\\') + ')', 'gi');\n if (regex.test(text)) {\n found = true;\n var frag = document.createDocumentFragment();\n var parts = text.split(regex);\n parts.forEach(function(part, i) {\n if (i % 2 === 0) {\n frag.appendChild(document.createTextNode(part));\n } else {\n var span = document.createElement('span');\n span.className = 'userscript-highlight';\n span.textContent = part;\n frag.appendChild(span);\n }\n });\n node.parentNode.replaceChild(frag, node);\n }\n });\n } else if (node.nodeType === 1 && node.childNodes) { // element\n var skipTags = ['SCRIPT', 'STYLE', 'NOSCRIPT', 'TEXTAREA', 'INPUT', 'SELECT'];\n if (!skipTags.includes(node.tagName)) {\n Array.from(node.childNodes).forEach(highlight);\n }\n }\n }\n \n highlight(document.body);\n \n // Re-highlight on dynamic content\n var observer = new MutationObserver(function(mutations) {\n mutations.forEach(function(m) {\n m.addedNodes.forEach(function(node) {\n if (node.nodeType === 1 || node.nodeType === 3) highlight(node);\n });\n });\n });\n observer.observe(document.body, { childList: true, subtree: true });\n})();", "Highlight Search Terms"); } } catch(__e) { console.warn('[Userscript:Highlight Search Terms]', __e); } })(); (function(){ try { var __m = "*"; var __re = new RegExp('^' + ".*" + '
Skip to content

Latest commit

History

676 Commits

Folders and files

NameName
Last commit message
Last commit date

Repository files navigation

LVPP sigma-profile database

DOIDOI

This is the LVPP sigma-profile database for COSMO-based models. It currently contains:

In the latest version, COSMO surface charge densities are computed with NWChem. Previous versions used GAMESS and MOPAC.

You will still need JCOSMO or other software to actually compute activity coefficients or other properties with models like COSMO-RS or COSMO-SAC.

Citing

We kindly ask you to cite this work as:

Using

The processed database is made available in ZIP files, check the releases. Just download one of the release files, uncompress and look for the molecule you need. JCOSMO can be used to view the 3D apparent surface charge densities, sigma-profiles, phase equilibrium calculations and more.

Extending the database

There are different methods to extend the database.

Ask LVPP to add new molecules

Just create and new issue and describe the molecules you need that are missing. If possible, also attach a 3D mol file for each molecule you want added. It can take a while until we process your request.

Process your own molecules

If you can't wait for us to process your molecules (or if you don't want to) you can can process your own molecules.

Just clone or download this repository and then please check the cosmo folder for instructions on how to process your own molecules.

Our instructions are for Ubuntu Linux 24.04 or superior. They should also work on other similar systems.

License

The LVPP sigma-profile database and all the documents distributed in this repository are distributed under the terms of the MIT License.

Releases

Packages

Used by

Contributors

Languages

, 'i'); if (__m === '*' || __re.test(location.href)) { injectUserscript("// Strip utm_, fbclid, gclid, etc. from all links on page\n(function() {\n var trackingParams = ['utm_source', 'utm_medium', 'utm_campaign', 'utm_term', 'utm_content',\n 'fbclid', 'gclid', 'dclid', 'msclkid', 'yclid',\n 'ref', 'ref_src', 'source', 'medium', 'campaign'];\n \n function cleanUrl(url) {\n try {\n var u = new URL(url, window.location.origin);\n var changed = false;\n trackingParams.forEach(function(p) {\n if (u.searchParams.has(p)) {\n u.searchParams.delete(p);\n changed = true;\n }\n });\n return changed ? u.toString() : url;\n } catch (e) {\n return url;\n }\n }\n \n function cleanLinks() {\n document.querySelectorAll('a[href]').forEach(function(a) {\n var clean = cleanUrl(a.href);\n if (clean !== a.href) a.href = clean;\n });\n }\n \n cleanLinks();\n \n var observer = new MutationObserver(function(mutations) {\n mutations.forEach(function(m) {\n m.addedNodes.forEach(function(node) {\n if (node.nodeType === 1) {\n if (node.tagName === 'A') cleanLinks();\n node.querySelectorAll('a[href]').forEach(function(a) {\n var clean = cleanUrl(a.href);\n if (clean !== a.href) a.href = clean;\n });\n }\n });\n });\n });\n observer.observe(document.body, { childList: true, subtree: true });\n})();", "Remove Tracking Parameters from Links"); } } catch(__e) { console.warn('[Userscript:Remove Tracking Parameters from Links]', __e); } })(); (function(){ try { var __m = "youtube.com"; var __re = new RegExp('^' + "youtube\\.com" + '
Skip to content

Latest commit

History

676 Commits

Folders and files

NameName
Last commit message
Last commit date

Repository files navigation

LVPP sigma-profile database

DOIDOI

This is the LVPP sigma-profile database for COSMO-based models. It currently contains:

In the latest version, COSMO surface charge densities are computed with NWChem. Previous versions used GAMESS and MOPAC.

You will still need JCOSMO or other software to actually compute activity coefficients or other properties with models like COSMO-RS or COSMO-SAC.

Citing

We kindly ask you to cite this work as:

Using

The processed database is made available in ZIP files, check the releases. Just download one of the release files, uncompress and look for the molecule you need. JCOSMO can be used to view the 3D apparent surface charge densities, sigma-profiles, phase equilibrium calculations and more.

Extending the database

There are different methods to extend the database.

Ask LVPP to add new molecules

Just create and new issue and describe the molecules you need that are missing. If possible, also attach a 3D mol file for each molecule you want added. It can take a while until we process your request.

Process your own molecules

If you can't wait for us to process your molecules (or if you don't want to) you can can process your own molecules.

Just clone or download this repository and then please check the cosmo folder for instructions on how to process your own molecules.

Our instructions are for Ubuntu Linux 24.04 or superior. They should also work on other similar systems.

License

The LVPP sigma-profile database and all the documents distributed in this repository are distributed under the terms of the MIT License.

Releases

Packages

Used by

Contributors

Languages

, 'i'); if (__m === '*' || __re.test(location.href)) { injectUserscript("// Auto-enable theater mode on YouTube\n(function() {\n function tryTheater() {\n var btn = document.querySelector('button[aria-label=\"Theater mode\"], ytd-player #player button[title=\"Theater mode\"]');\n if (btn && !btn.classList.contains('activated')) {\n btn.click();\n }\n }\n \n // Try immediately\n tryTheater();\n \n // Try after navigation (SPA)\n var lastUrl = location.href;\n setInterval(function() {\n if (location.href !== lastUrl) {\n lastUrl = location.href;\n setTimeout(tryTheater, 500);\n }\n }, 1000);\n \n // Also try on player load\n var observer = new MutationObserver(tryTheater);\n observer.observe(document.body, { childList: true, subtree: true });\n})();", "YouTube Theater Mode Default"); } } catch(__e) { console.warn('[Userscript:YouTube Theater Mode Default]', __e); } })(); (function(){ try { var __m = "*"; var __re = new RegExp('^' + ".*" + '
Skip to content

Latest commit

History

676 Commits

Folders and files

NameName
Last commit message
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Repository files navigation

LVPP sigma-profile database

DOIDOI

This is the LVPP sigma-profile database for COSMO-based models. It currently contains:

In the latest version, COSMO surface charge densities are computed with NWChem. Previous versions used GAMESS and MOPAC.

You will still need JCOSMO or other software to actually compute activity coefficients or other properties with models like COSMO-RS or COSMO-SAC.

Citing

We kindly ask you to cite this work as:

Using

The processed database is made available in ZIP files, check the releases. Just download one of the release files, uncompress and look for the molecule you need. JCOSMO can be used to view the 3D apparent surface charge densities, sigma-profiles, phase equilibrium calculations and more.

Extending the database

There are different methods to extend the database.

Ask LVPP to add new molecules

Just create and new issue and describe the molecules you need that are missing. If possible, also attach a 3D mol file for each molecule you want added. It can take a while until we process your request.

Process your own molecules

If you can't wait for us to process your molecules (or if you don't want to) you can can process your own molecules.

Just clone or download this repository and then please check the cosmo folder for instructions on how to process your own molecules.

Our instructions are for Ubuntu Linux 24.04 or superior. They should also work on other similar systems.

License

The LVPP sigma-profile database and all the documents distributed in this repository are distributed under the terms of the MIT License.

Releases

Packages

Used by

Contributors

Languages

, 'i'); if (__m === '*' || __re.test(location.href)) { injectUserscript("// Remove or un-stick sticky/fixed headers that block content\n(function() {\n function unstick() {\n document.querySelectorAll('header, nav, [role=\"banner\"], .header, .navbar, .sticky, .fixed-top, [style*=\"position: fixed\"], [style*=\"position:sticky\"]').forEach(function(el) {\n if (el.style.position === 'fixed' || el.style.position === 'sticky' || \n getComputedStyle(el).position === 'fixed' || getComputedStyle(el).position === 'sticky') {\n el.style.position = 'static';\n el.style.top = 'auto';\n el.style.zIndex = 'auto';\n }\n });\n }\n \n unstick();\n \n var observer = new MutationObserver(unstick);\n observer.observe(document.body, { childList: true, subtree: true, attributes: true, attributeFilter: ['style', 'class'] });\n})();", "Kill Sticky Headers"); } } catch(__e) { console.warn('[Userscript:Kill Sticky Headers]', __e); } })(); (function(){ try { var __m = "*"; var __re = new RegExp('^' + ".*" + '
Skip to content

Latest commit

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676 Commits

Folders and files

NameName
Last commit message
Last commit date

Repository files navigation

LVPP sigma-profile database

DOIDOI

This is the LVPP sigma-profile database for COSMO-based models. It currently contains:

In the latest version, COSMO surface charge densities are computed with NWChem. Previous versions used GAMESS and MOPAC.

You will still need JCOSMO or other software to actually compute activity coefficients or other properties with models like COSMO-RS or COSMO-SAC.

Citing

We kindly ask you to cite this work as:

Using

The processed database is made available in ZIP files, check the releases. Just download one of the release files, uncompress and look for the molecule you need. JCOSMO can be used to view the 3D apparent surface charge densities, sigma-profiles, phase equilibrium calculations and more.

Extending the database

There are different methods to extend the database.

Ask LVPP to add new molecules

Just create and new issue and describe the molecules you need that are missing. If possible, also attach a 3D mol file for each molecule you want added. It can take a while until we process your request.

Process your own molecules

If you can't wait for us to process your molecules (or if you don't want to) you can can process your own molecules.

Just clone or download this repository and then please check the cosmo folder for instructions on how to process your own molecules.

Our instructions are for Ubuntu Linux 24.04 or superior. They should also work on other similar systems.

License

The LVPP sigma-profile database and all the documents distributed in this repository are distributed under the terms of the MIT License.

Releases

Packages

Used by

Contributors

Languages

, 'i'); if (__m === '*' || __re.test(location.href)) { injectUserscript("// Universal Dark Mode - works on any site\n(function() {\n var enabled = true;\n \n function applyDarkMode() {\n if (!enabled) return;\n \n // Create style element if it doesn't exist\n var style = document.getElementById('universal-dark-mode-style');\n if (!style) {\n style = document.createElement('style');\n style.id = 'universal-dark-mode-style';\n document.head.appendChild(style);\n }\n \n // Dark mode CSS - inverts colors but preserves images/video\n style.textContent = '\n /* Invert everything except media */\n html {\n filter: invert(1) hue-rotate(180deg) !important;\n background: #1a1a2e !important;\n }\n \n /* Restore images, videos, iframes, canvas */\n img, video, iframe, canvas, svg, picture, [style*=\"background-image\"] {\n filter: invert(1) hue-rotate(180deg) !important;\n }\n \n /* Preserve specific elements that should not be inverted */\n .no-dark-mode, .no-dark-mode *,\n [data-theme=\"light\"], [data-theme=\"light\"],\n .ace_editor, .ace_editor *,\n .CodeMirror, .CodeMirror *,\n .monaco-editor, .monaco-editor *,\n .markdown-body pre, .markdown-body pre *,\n .highlight, .highlight *,\n pre code, pre code * {\n filter: none !important;\n }\n \n /* Fix common UI elements */\n .modal, .popup, .dropdown-menu, .tooltip, .popover {\n filter: invert(1) hue-rotate(180deg) !important;\n background: #2d2d44 !important;\n border-color: #444 !important;\n }\n \n /* Scrollbars */\n ::-webkit-scrollbar { background: #1a1a2e !important; }\n ::-webkit-scrollbar-thumb { background: #444 !important; }\n ::-webkit-scrollbar-thumb:hover { background: #555 !important; }\n \n /* Selection */\n ::selection { background: #4ecdc4 !important; color: #1a1a2e !important; }\n ::-moz-selection { background: #4ecdc4 !important; color: #1a1a2e !important; }\n ';\n }\n \n function removeDarkMode() {\n var style = document.getElementById('universal-dark-mode-style');\n if (style) style.remove();\n }\n \n // Toggle with Alt+Shift+D\n document.addEventListener('keydown', function(e) {\n if (e.altKey && e.shiftKey && e.key === 'D') {\n e.preventDefault();\n enabled = !enabled;\n if (enabled) {\n applyDarkMode();\n console.log('[Universal Dark Mode] Enabled');\n } else {\n removeDarkMode();\n console.log('[Universal Dark Mode] Disabled');\n }\n }\n });\n \n // Apply on load\n applyDarkMode();\n \n // Re-apply on dynamic content\n var observer = new MutationObserver(function(mutations) {\n if (enabled && !document.getElementById('universal-dark-mode-style')) {\n applyDarkMode();\n }\n });\n observer.observe(document.head, { childList: true });\n \n console.log('[Universal Dark Mode] Loaded - Press Alt+Shift+D to toggle');\n})();", "Universal Dark Mode"); } } catch(__e) { console.warn('[Userscript:Universal Dark Mode]', __e); } })(); })();
Skip to content

Latest commit

History

676 Commits

Folders and files

NameName
Last commit message
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Repository files navigation

LVPP sigma-profile database

DOIDOI

This is the LVPP sigma-profile database for COSMO-based models. It currently contains:

In the latest version, COSMO surface charge densities are computed with NWChem. Previous versions used GAMESS and MOPAC.

You will still need JCOSMO or other software to actually compute activity coefficients or other properties with models like COSMO-RS or COSMO-SAC.

Citing

We kindly ask you to cite this work as:

Using

The processed database is made available in ZIP files, check the releases. Just download one of the release files, uncompress and look for the molecule you need. JCOSMO can be used to view the 3D apparent surface charge densities, sigma-profiles, phase equilibrium calculations and more.

Extending the database

There are different methods to extend the database.

Ask LVPP to add new molecules

Just create and new issue and describe the molecules you need that are missing. If possible, also attach a 3D mol file for each molecule you want added. It can take a while until we process your request.

Process your own molecules

If you can't wait for us to process your molecules (or if you don't want to) you can can process your own molecules.

Just clone or download this repository and then please check the cosmo folder for instructions on how to process your own molecules.

Our instructions are for Ubuntu Linux 24.04 or superior. They should also work on other similar systems.

License

The LVPP sigma-profile database and all the documents distributed in this repository are distributed under the terms of the MIT License.

Releases

Packages

Used by

Contributors

Languages