Biological Data

info

• most of the software used during exercises available from: course site
• E-mail: silvio.tosatto@unipd.it
• Tel: 049-8276269
• Room: 90, 5^th east, Vallisneri
• E-learning
  • Biological Data
    • slides (asar)

Evaluation Criteria

• Group project (100 point, 67% of the total)
  • 4/5 students
  • Code, data and written report to hand in ten days before exam.
  • Different project for each group
• Oral examination (50 point, 33% of the total)
  • 15/20 min
  • Discussion of the project (one at a time)
  • Questions from the course material
• Optional bonuses:
  • interesting contribution to lecture
• 50% of each part is needed to pass

intro

• CAGI project
• Personal Genome Project (PGP) Challenge
• incidental findings and ethic
• 23andme

Course structure

• Sequences
  • mapping from one dimention to three dimentions
• Structures
• Literature
• Interactions
  • "social side"
• Applications
• Computational techniques:
  • APIs
  • Python scripts
  • Juyter
• Complete biological example (exercises)