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MarBL

Maryland Bioinformatics Labs

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CHM13 CHM13Public
The complete sequence of a human genome
1.1k 103
canu canuPublic
A single molecule sequence assembler for genomes large and small.
C++ 707 180
Krona KronaPublic
Interactively explore metagenomes and more from a web browser.
JavaScript 504 109
Mash MashPublic
Fast genome and metagenome distance estimation using MinHash
C++ 451 95
verkko verkkoPublic
Telomere-to-telomere assembly of accurate long reads (PacBio HiFi, Oxford Nanopore Duplex, HERRO corrected Oxford Nanopore Simplex) and Oxford Nanopore ultra-long reads.
Python 409 34
merqury merquryPublic
k-mer based assembly evaluation
Shell 352 25

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Showing 10 of 45 repositories

MetagenomeScope Public
Visualization tool for (meta)genome assembly graphs
marbl/MetagenomeScope's past year of commit activity
Python 50GPL-3.0 10 160 0 Updated Aug 11, 2026
HG002 Public
A complete diploid human genome
marbl/HG002's past year of commit activity
156 5 2 0 Updated Aug 10, 2026
T2T-Browser Public
Genome browser hub for the T2T genomes and resources
marbl/T2T-Browser's past year of commit activity
HTML 30 3 0 0 Updated Aug 10, 2026
TTT Public
marbl/TTT's past year of commit activity
Python 22 0 3 0 Updated Aug 6, 2026
GQC Public
Python package for comparing genome assemblies and read data to the diploid Q100 benchmark
marbl/GQC's past year of commit activity
Python 17 3 1 0 Updated Aug 6, 2026
anianns Public
ANI based satellite annotation
marbl/anianns's past year of commit activity
Python 28MIT 0 1 0 Updated Aug 6, 2026
HG002-issues Public
HG002 human reference genome issue tracking and polishing
marbl/HG002-issues's past year of commit activity
11 0 31 0 Updated Aug 5, 2026
gis-bulk-assembly Public
Utility scripts to download/process/assemble/qc large collection of samples from AWS/FTP
marbl/gis-bulk-assembly's past year of commit activity
Perl 0 0 0 0 Updated Aug 4, 2026
verkko Public
Telomere-to-telomere assembly of accurate long reads (PacBio HiFi, Oxford Nanopore Duplex, HERRO corrected Oxford Nanopore Simplex) and Oxford Nanopore ultra-long reads.
marbl/verkko's past year of commit activity
Python 409 34 19 0 Updated Aug 4, 2026
DJCounter Public
This repository can be used to calculate the number of DJ counts in the genome aligned to the GRCh38 (broad reference).
marbl/DJCounter's past year of commit activity
Jupyter Notebook 6 0 0 0 Updated Jul 30, 2026

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