Welcome to the Google Genomics GitHub Organization!
- Watch a video
- Try a few BigQuery queries upon public genomic data.
getting-started-bigquery Example queries to show how to get started with genomic data in BigQuery.
codelabs Codelabs demonstrating usage of several tools and systems upon genomic data.
bigquery-examples Advanced BigQuery examples upon genomic data.
api-client-java A command line tool for Google Genomics API queries.
api-client-r An R package for Google Genomics API queries.
gatk-tools-java Tools for using Picard and GATK with the Google Genomics API.
dataflow-java Google Cloud Dataflow pipelines upon genomic data such as Identity-By-State.
spark-examples Apache Spark jobs on genomic data such as Principal Coordinate Analysis.
mapreduce-python Google App Engine Python MapReduce job which calculates Read coverage.
getting-started Examples of how to get started with the Google Genomics API in many languages.
api-provider-local-java An implementation of the Global Alliance Reads API which reads data from local BAM files.
api-client-javascript A simple web application that demonstrates how javascript can be used to fetch data from the Google Genomics APIs.
api-client-android A sample Android app that calls the Google Genomics API.
api-client-python Google AppEngine implelmentation of a simple genome browser that pulls data from the Google Genomics API.
api-client-r An R package for Google Genomics API queries.
See the Shiny example.
See the ggbio example.
- denovo-variant-caller-java A de novo variant caller which uses information from a mother, father and child trio with a bayesian inference method.
gce-images Scripts that create a Google Compute Engine image containing a set of popular genomics software.
utils-java Common Java files for Google Genomics integrations.
- See the README in each GitHub repository.
- http://cloud.google.com/genomics
- http://google-genomics.readthedocs.org