This organization holds experimental and archived repositories from the Open Microscopy Environment. You can find the official repositories under https://github.com/ome or the documentation under https://www.openmicroscopy.org/.
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- bio-formats-matlab
bio-formats-matlab Public archive**Experimental** Bio-Formats Matlab and GNU Octave bindings
- omero-py-alpine-docker
omero-py-alpine-docker PublicMinimal OMERO.py image based on Alpine Linux
Dockerfile 1
- centos-systemd-jupyter-notebook
centos-systemd-jupyter-notebook PublicBase notebook for running bash in JupyterHub with a CentOS 7 System image
- ome-sysops-notebooks
ome-sysops-notebooks PublicNotebooks with examples of managing the OME Kubernetes systems
Jupyter Notebook 1
- idr0083-sars-cov2-notebook
idr0083-sars-cov2-notebook PublicAn example of reading a 13 gigapixel SARS-CoV-2 image (around 27 GB on disk) in Jupyter using Zarr
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microscopepony/bio-formats-bundles's past year of commit activity - bio-formats-imagej Public archive
**Experimental** Bio-Formats ImageJ plugin for image import and export
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microscopepony/bio-formats-matlab's past year of commit activity - staged-recipes Public Forked from conda-forge/staged-recipes
A place to submit conda recipes before they become fully fledged conda-forge feedstocks
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microscopepony/staged-recipes's past year of commit activity - idr0015-tara-oceans-geospatial Public
This notebook shows how to plot geospatial metadata attached to the samples gathered by the Tara Oceans project.
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microscopepony/idr0015-tara-oceans-geospatial's past year of commit activity - idr0083-sars-cov2-notebook Public
An example of reading a 13 gigapixel SARS-CoV-2 image (around 27 GB on disk) in Jupyter using Zarr
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microscopepony/idr0083-sars-cov2-notebook's past year of commit activity
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