MPI EVA Bioinformatics

A pipeline for the analysis of sedimentary ancient mtDNA.

An aDNA aware short-read mapper

Basic post-processing for human shotgun and nuclear capture libraries

The mpieva/quicksand helper pipeline

the Burrows Wheeler Aligner with networking capabilities

Udo Stenzel's biohazard — a Haskell library for bioinformatics [MIRROR]

Perl script for identifying cross-contamination events that occurred between double-index libraries due to index swapping during library amplification or sequencing.

Udo Stenzel's biohazard-tools — a collection of command-line utilities for bioinformatics [MIRROR]

Scripts used within the sediment capture pipeline