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  1. JaBbA JaBbAPublic

    MIP based joint inference of copy number and rearrangement state in cancer whole genome sequence data.

    R 59 27

  2. gGnome gGnomePublic

    R API for browsing, analyzing, and manipulating reference-aligned genome graphs in a GenomicRanges framework

    R 42 24

  3. fishHook fishHookPublic

    R package for applying Gamma-Poisson regression to identify statistical enrichment or depletion of somatic mutations in regions after correcting for genomic covariates.

    R 32 10

  4. gGnome.js gGnome.jsPublic

    JavaScript 27 4

  5. gTrack gTrackPublic

    R package for visualizing complex and multi-track 1D and 2D genomic data in GenomicRanges framework

    R 18 12

  6. chromunity chromunityPublic

    Discovery of communities in Pore-C concatemers

    R 16 6

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