I work at the intersection of computational biology and immunology, developing tools and methods to decode immune responses from high-dimensional data.

• MD/PhD — University of Iowa (Medical Scientist Training Program)
• Residency & Postdoc — Washington University PSTP (co-mentored by Jon Brestoff & David DeNardo)
• Fellowship - Histocompatibility and Immunogenetics
• Focus — Innate cellular barcodes (mitochondrial genomes, immune receptor sequences) for tracking immune responses and predicting clinical outcomes

I build R/Bioconductor packages for single-cell immune analysis:

scRepertoire TCR/BCR repertoire analysis

escape Gene set enrichment

Trex TCR deep learning

Ibex BCR deep learning

immApex Immune receptor featurization

In development:immReferent · immLynx · immGLIPH · deepMatchR · bHIVE

• Bug reports or feature requests? Open an issue on the relevant repo
• Collaboration inquiries? Reach out via my website
• Publications? PDFs available at borch.dev