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Funannotate eggNOG multi-EC parsing can fabricate incorrect EC annotations

Status: Open.

#1207In nextgenusfs/funannotate;

· highfield09 opened on Aug 26, 2026

tRNA scan results filtering

Status: Open.

#1196In nextgenusfs/funannotate;

· erickfigue opened on Aug 10, 2026

Gene number decreases when rerunning Funannotate on the same genome

Status: Open.

#1193In nextgenusfs/funannotate;

· BKGiwa opened on Aug 7, 2026

Main README and docs do not mention funannotate2

Status: Open.

#1187In nextgenusfs/funannotate;

· peterjc opened on Jul 31, 2026

gmes_petap.pl fails, segmentation fault in gmhmme3

Status: Open.

#1186In nextgenusfs/funannotate;

· peterjc opened on Jul 30, 2026

Support Python 3.12 onwards

Status: Open.

#1184In nextgenusfs/funannotate;

· peterjc opened on Jul 29, 2026

funannotate train: operator-precedence bug in bamthreads calculation (aux_scripts/trinity.py)

bug

Status: Open.

#1179In nextgenusfs/funannotate;

· hyphaltip opened on Jul 23, 2026

augustus hangs in BUSCO runs for training

bug

enhancement

Status: Open.

#1169In nextgenusfs/funannotate;

· hyphaltip opened on Jun 7, 2026

·

1.8.18

Genes are misassigned to "Envelope glycoprotein gp160" by eggnog

Status: Open.

#1159In nextgenusfs/funannotate;

· alexcritschristoph opened on May 11, 2026

CMD ERROR: gmes_petap.pl

Status: Open.

#1154In nextgenusfs/funannotate;

· Tassadaar opened on Mar 19, 2026

Query Regtarding Funannotate/MySQL

Status: Open.

#1151In nextgenusfs/funannotate;

· ufaroooq opened on Feb 9, 2026

smcluster.proteins.fasta from antismash output is empty. funannotate annotate fails at MIBiG cross-reference stage

Status: Open.

#1147In nextgenusfs/funannotate;

· eggrandio opened on Jan 7, 2026