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Problem with funannote2 annotate parsing from funannotate-addons results

Status: Open.

#96In nextgenusfs/funannotate2;

· OceaneMion opened on Aug 26, 2026

predictions with RNA evidence

Status: Open.

#92In nextgenusfs/funannotate2;

· xvazquezc opened on Aug 11, 2026

prothint.py:503: SyntaxWarning: invalid escape sequence '\.'

Status: Open.

#88In nextgenusfs/funannotate2;

· peterjc opened on Aug 3, 2026

No "funannotate2 check" command?

enhancementNew feature or requestNew feature or request

Status: Open.

#87In nextgenusfs/funannotate2;

· peterjc opened on Aug 3, 2026

Why can't install funannotate2 Databases

Status: Open.

#78In nextgenusfs/funannotate2;

· zut0may0 opened on Jul 15, 2026

Genemark run failed: '_io.TextIOWrapper' object has no attribute 'splitlines'

Status: Open.

#61In nextgenusfs/funannotate2;

· user0380 opened on May 18, 2026

Problem on finding best augustus species

Status: Open.

#60In nextgenusfs/funannotate2;

· 444thLiao opened on May 7, 2026

Bug with pyfastx in f2 train [with solution]

Status: Open.

#59In nextgenusfs/funannotate2;

· edwhisnant opened on Apr 28, 2026

Augustus CMD ERROR during f2 predict

Status: Open.

#54In nextgenusfs/funannotate2;

· edwhisnant opened on Apr 21, 2026

Potential bug in tmp directory cleanup

Status: Open.

#49In nextgenusfs/funannotate2;

· edwhisnant opened on Apr 2, 2026

diploid assemblies, how do we annotate?

enhancementNew feature or requestNew feature or request

questionFurther information is requestedFurther information is requested

Status: Open.

#47In nextgenusfs/funannotate2;

· nextgenusfs opened on Mar 19, 2026

ERROR in parsing gene gapmm2_4

Status: Open.

#44In nextgenusfs/funannotate2;

· Iruj-04 opened on Mar 3, 2026