ni-lab

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1. personalized-expression-benchmark personalized-expression-benchmarkPublic

   Evaluating genomic sequence models for explaining personalized expression variation

   Jupyter Notebook 20 2

2. finetuning-enformer finetuning-enformerPublic

   Code for improving the performance of sequence-to-expression models for making individual-specific gene expression predictions by fine-tuning them on personal genome and transcriptome data.

   Jupyter Notebook 19 5

3. guanine guaninePublic

   GUANinE Benchmark Dataset and Tools

   10

4. CellTypeSpecificAccessibilityPrediction CellTypeSpecificAccessibilityPredictionPublic

   Jupyter Notebook 6 1

5. DeepShape DeepShapePublic

   Jupyter Notebook 5 1

6. basenji2_uncertainty basenji2_uncertaintyPublic

   Jupyter Notebook 4