Name		Name	Last commit message	Last commit date
README.md		README.md
auto-complete.sh		auto-complete.sh
config.yml		config.yml
cutrun.py		cutrun.py
cutrun.sh		cutrun.sh
genome.yml		genome.yml
mac2-samples.conf		mac2-samples.conf
read_length.R		read_length.R
settings.yml		settings.yml

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CUT-RUN

Bioinformatic pipeline for CUT&RUN.

Software dependencies

FastQC
MultiQC
Bowtie2
Trim Galore
pigz (if not installed gunzip will be used, but will be slower)
Picard

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Pipeline for CUT&RUN analysis

bioinformatics-pipeline cutrun

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