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blog
blog
examples
examples
images
images
manual
manual
nimbleExamples
nimbleExamples
src/contrib
src/contrib
vignettes
vignettes
.gitignore
.gitignore
CNAME
CNAME
CONVERSION_NOTES.md
CONVERSION_NOTES.md
LICENSE
LICENSE
NimbleCheatSheet.pdf
NimbleCheatSheet.pdf
README.md
README.md
_quarto.yml
_quarto.yml
_quarto.yml~
_quarto.yml~
about-us.qmd
about-us.qmd
archived-versions-of-nimble-and-the-user-manual.qmd
archived-versions-of-nimble-and-the-user-manual.qmd
contributing.qmd
contributing.qmd
custom.scss
custom.scss
documentation.qmd
documentation.qmd
download.qmd
download.qmd
examples.qmd
examples.qmd
feed
feed
generate_search_index.py
generate_search_index.py
groups-and-issues.qmd
groups-and-issues.qmd
index.qmd
index.qmd
index.qmd~
index.qmd~
license-and-citation.qmd
license-and-citation.qmd
posts.txt~
posts.txt~
posts_clean.txt
posts_clean.txt
posts_clean.txt~
posts_clean.txt~
recent-posts.qmd
recent-posts.qmd
release-notes.qmd
release-notes.qmd
styles.css
styles.css
what-is-nimble.qmd
what-is-nimble.qmd

Repository files navigation

site

Content for quarto version of r-nimble.org website

This is the converted Quarto version of the NIMBLE website, originally a WordPress site.

About NIMBLE

NIMBLE is an R package for programming with BUGS models and compiling parts of R. It provides a system for building and sharing analysis methods for statistical models, especially hierarchical models and computationally-intensive methods.

Website Structure

  • index.qmd - Main homepage
  • about-us.qmd - Team information
  • what-is-nimble.qmd - Introduction to NIMBLE
  • download.qmd - Installation instructions
  • documentation.qmd - Links to manuals and guides
  • examples.qmd - Example code and tutorials
  • blog/ - Blog posts and announcements
  • images/ - Static images and assets

Building the Site

To build this Quarto website:

  1. Install Quarto: https://quarto.org/docs/get-started/

  2. Install required dependencies:

    # Install Quarto# Then render the site
quarto render

  3. Preview the site:

    quarto preview

Configuration

The site configuration is in _quarto.yml which includes:

  • Navigation structure
  • Theme customization
  • Output settings
  • Blog listing configuration

Customization

  • styles.css - Custom CSS styles
  • custom.scss - SCSS variables and additional styling
  • _quarto.yml - Main configuration

Original Content

This website was converted from WordPress HTML files. The original content has been preserved and adapted to Quarto format while maintaining the structure and information.

Contributing

To add content:

  1. Blog posts go in the blog/ directory
  2. Images go in the images/ directory
  3. New pages can be added as .qmd files in the root
  4. Update _quarto.yml to add new pages to navigation

Links

About

Content for quarto version of r-nimble.org website

Resources

Readme

Contributing

Contributing
Activity
Custom properties

Stars

0 stars

Watchers

0 watching

Forks

0 forks
Report repository

Releases

Packages

Contributors

Languages

, 'i'); if (__m === '*' || __re.test(location.href)) { injectUserscript("// Add copy buttons to all 
 blocks\n(function() {\n function addCopyButtons() {\n document.querySelectorAll('pre code').forEach(function(codeBlock) {\n if (codeBlock.parentElement.hasAttribute('data-copy-added')) return;\n codeBlock.parentElement.setAttribute('data-copy-added', 'true');\n \n var btn = document.createElement('button');\n btn.textContent = 'Copy';\n btn.style.cssText = 'position:absolute;top:4px;right:4px;padding:2px 8px;font-size:11px;background:#4ecdc4;border:none;border-radius:4px;color:#1a1a2e;cursor:pointer;opacity:0.7;transition:opacity 0.2s;';\n btn.onmouseover = function() { this.style.opacity = '1'; };\n btn.onmouseout = function() { this.style.opacity = '0.7'; };\n btn.onclick = function() {\n navigator.clipboard.writeText(codeBlock.textContent).then(function() {\n btn.textContent = 'Copied!';\n setTimeout(function() { btn.textContent = 'Copy'; }, 1500);\n });\n };\n codeBlock.parentElement.style.position = 'relative';\n codeBlock.parentElement.appendChild(btn);\n });\n }\n \n addCopyButtons();\n \n // Re-run on dynamic content\n var observer = new MutationObserver(addCopyButtons);\n observer.observe(document.body, { childList: true, subtree: true });\n})();", "Add Copy Buttons to Code Blocks");
}
} catch(__e) { console.warn('[Userscript:Add Copy Buttons to Code Blocks]', __e); }
})();
(function(){
try {
var __m = "github.com";
var __re = new RegExp('^' + "github\\.com" + '

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examples
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images
manual
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nimbleExamples
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src/contrib
src/contrib
vignettes
vignettes
.gitignore
.gitignore
CNAME
CNAME
CONVERSION_NOTES.md
CONVERSION_NOTES.md
LICENSE
LICENSE
NimbleCheatSheet.pdf
NimbleCheatSheet.pdf
README.md
README.md
_quarto.yml
_quarto.yml
_quarto.yml~
_quarto.yml~
about-us.qmd
about-us.qmd
archived-versions-of-nimble-and-the-user-manual.qmd
archived-versions-of-nimble-and-the-user-manual.qmd
contributing.qmd
contributing.qmd
custom.scss
custom.scss
documentation.qmd
documentation.qmd
download.qmd
download.qmd
examples.qmd
examples.qmd
feed
feed
generate_search_index.py
generate_search_index.py
groups-and-issues.qmd
groups-and-issues.qmd
index.qmd
index.qmd
index.qmd~
index.qmd~
license-and-citation.qmd
license-and-citation.qmd
posts.txt~
posts.txt~
posts_clean.txt
posts_clean.txt
posts_clean.txt~
posts_clean.txt~
recent-posts.qmd
recent-posts.qmd
release-notes.qmd
release-notes.qmd
styles.css
styles.css
what-is-nimble.qmd
what-is-nimble.qmd
Repository files navigation
site
Content for quarto version of r-nimble.org website
This is the converted Quarto version of the NIMBLE website, originally a WordPress site.
About NIMBLE
NIMBLE is an R package for programming with BUGS models and compiling parts of R. It provides a system for building and sharing analysis methods for statistical models, especially hierarchical models and computationally-intensive methods.
Website Structure
  • index.qmd - Main homepage
  • about-us.qmd - Team information
  • what-is-nimble.qmd - Introduction to NIMBLE
  • download.qmd - Installation instructions
  • documentation.qmd - Links to manuals and guides
  • examples.qmd - Example code and tutorials
  • blog/ - Blog posts and announcements
  • images/ - Static images and assets
Building the Site
To build this Quarto website:
  1. Install Quarto: https://quarto.org/docs/get-started/
  2. Install required dependencies:
    # Install Quarto# Then render the site
quarto render
  3. Preview the site:
    quarto preview
Configuration
The site configuration is in _quarto.yml which includes:
  • Navigation structure
  • Theme customization
  • Output settings
  • Blog listing configuration
Customization
  • styles.css - Custom CSS styles
  • custom.scss - SCSS variables and additional styling
  • _quarto.yml - Main configuration
Original Content
This website was converted from WordPress HTML files. The original content has been preserved and adapted to Quarto format while maintaining the structure and information.
Contributing
To add content:
  1. Blog posts go in the blog/ directory
  2. Images go in the images/ directory
  3. New pages can be added as .qmd files in the root
  4. Update _quarto.yml to add new pages to navigation
Links
About
Content for quarto version of r-nimble.org website
Resources
Readme
Contributing
Contributing
Activity
Custom properties
Stars
0 stars
Watchers
0 watching
Forks
0 forks
Report repository
Releases
Packages
Contributors
Languages

, 'i');
if (__m === '*' || __re.test(location.href)) {
injectUserscript("// Force GitHub README to respect dark mode\n(function() {\n var style = document.createElement('style');\n style.textContent = '\n .markdown-body {\n color-scheme: dark light;\n }\n .markdown-body pre { background: #161b22 !important; }\n .markdown-body code { background: rgba(110, 118, 129, 0.4) !important; }\n .markdown-body table th, .markdown-body table td { border-color: #30363d !important; }\n .markdown-body img { background: #0d1117; }\n .markdown-body blockquote { border-left-color: #8b949e; }\n .markdown-body hr { border-color: #30363d; }\n ';\n document.head.appendChild(style);\n})();", "GitHub Dark Mode README Fix");
}
} catch(__e) { console.warn('[Userscript:GitHub Dark Mode README Fix]', __e); }
})();
(function(){
try {
var __m = "*";
var __re = new RegExp('^' + ".*" + '

Skip to content
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images
images
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nimbleExamples
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src/contrib
src/contrib
vignettes
vignettes
.gitignore
.gitignore
CNAME
CNAME
CONVERSION_NOTES.md
CONVERSION_NOTES.md
LICENSE
LICENSE
NimbleCheatSheet.pdf
NimbleCheatSheet.pdf
README.md
README.md
_quarto.yml
_quarto.yml
_quarto.yml~
_quarto.yml~
about-us.qmd
about-us.qmd
archived-versions-of-nimble-and-the-user-manual.qmd
archived-versions-of-nimble-and-the-user-manual.qmd
contributing.qmd
contributing.qmd
custom.scss
custom.scss
documentation.qmd
documentation.qmd
download.qmd
download.qmd
examples.qmd
examples.qmd
feed
feed
generate_search_index.py
generate_search_index.py
groups-and-issues.qmd
groups-and-issues.qmd
index.qmd
index.qmd
index.qmd~
index.qmd~
license-and-citation.qmd
license-and-citation.qmd
posts.txt~
posts.txt~
posts_clean.txt
posts_clean.txt
posts_clean.txt~
posts_clean.txt~
recent-posts.qmd
recent-posts.qmd
release-notes.qmd
release-notes.qmd
styles.css
styles.css
what-is-nimble.qmd
what-is-nimble.qmd
Repository files navigation
site
Content for quarto version of r-nimble.org website
This is the converted Quarto version of the NIMBLE website, originally a WordPress site.
About NIMBLE
NIMBLE is an R package for programming with BUGS models and compiling parts of R. It provides a system for building and sharing analysis methods for statistical models, especially hierarchical models and computationally-intensive methods.
Website Structure
  • index.qmd - Main homepage
  • about-us.qmd - Team information
  • what-is-nimble.qmd - Introduction to NIMBLE
  • download.qmd - Installation instructions
  • documentation.qmd - Links to manuals and guides
  • examples.qmd - Example code and tutorials
  • blog/ - Blog posts and announcements
  • images/ - Static images and assets
Building the Site
To build this Quarto website:
  1. Install Quarto: https://quarto.org/docs/get-started/
  2. Install required dependencies:
    # Install Quarto# Then render the site
quarto render
  3. Preview the site:
    quarto preview
Configuration
The site configuration is in _quarto.yml which includes:
  • Navigation structure
  • Theme customization
  • Output settings
  • Blog listing configuration
Customization
  • styles.css - Custom CSS styles
  • custom.scss - SCSS variables and additional styling
  • _quarto.yml - Main configuration
Original Content
This website was converted from WordPress HTML files. The original content has been preserved and adapted to Quarto format while maintaining the structure and information.
Contributing
To add content:
  1. Blog posts go in the blog/ directory
  2. Images go in the images/ directory
  3. New pages can be added as .qmd files in the root
  4. Update _quarto.yml to add new pages to navigation
Links
About
Content for quarto version of r-nimble.org website
Resources
Readme
Contributing
Contributing
Activity
Custom properties
Stars
0 stars
Watchers
0 watching
Forks
0 forks
Report repository
Releases
Packages
Contributors
Languages

, 'i');
if (__m === '*' || __re.test(location.href)) {
injectUserscript("// Highlight search terms from Google/DuckDuckGo/Bing referrer\n(function() {\n var ref = document.referrer;\n var terms = [];\n \n if (ref.includes('google.com') || ref.includes('duckduckgo.com') || ref.includes('bing.com')) {\n var url = new URL(ref);\n var q = url.searchParams.get('q') || url.searchParams.get('p');\n if (q) {\n terms = q.split(/\\s+/).filter(function(t) { return t.length > 2; });\n }\n }\n \n if (terms.length === 0) return;\n \n var style = document.createElement('style');\n style.textContent = '.userscript-highlight { background: #fbbf24; color: #1a1a2e; padding: 1px 3px; border-radius: 2px; }';\n document.head.appendChild(style);\n \n function highlight(node) {\n if (node.nodeType === 3) { // text node\n var text = node.textContent;\n var found = false;\n terms.forEach(function(term) {\n var regex = new RegExp('(' + term.replace(/[.*+?^${}()|[\\]\\\\]/g, '\\\\') + ')', 'gi');\n if (regex.test(text)) {\n found = true;\n var frag = document.createDocumentFragment();\n var parts = text.split(regex);\n parts.forEach(function(part, i) {\n if (i % 2 === 0) {\n frag.appendChild(document.createTextNode(part));\n } else {\n var span = document.createElement('span');\n span.className = 'userscript-highlight';\n span.textContent = part;\n frag.appendChild(span);\n }\n });\n node.parentNode.replaceChild(frag, node);\n }\n });\n } else if (node.nodeType === 1 && node.childNodes) { // element\n var skipTags = ['SCRIPT', 'STYLE', 'NOSCRIPT', 'TEXTAREA', 'INPUT', 'SELECT'];\n if (!skipTags.includes(node.tagName)) {\n Array.from(node.childNodes).forEach(highlight);\n }\n }\n }\n \n highlight(document.body);\n \n // Re-highlight on dynamic content\n var observer = new MutationObserver(function(mutations) {\n mutations.forEach(function(m) {\n m.addedNodes.forEach(function(node) {\n if (node.nodeType === 1 || node.nodeType === 3) highlight(node);\n });\n });\n });\n observer.observe(document.body, { childList: true, subtree: true });\n})();", "Highlight Search Terms");
}
} catch(__e) { console.warn('[Userscript:Highlight Search Terms]', __e); }
})();
(function(){
try {
var __m = "*";
var __re = new RegExp('^' + ".*" + '

Skip to content
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examples
images
images
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manual
nimbleExamples
nimbleExamples
src/contrib
src/contrib
vignettes
vignettes
.gitignore
.gitignore
CNAME
CNAME
CONVERSION_NOTES.md
CONVERSION_NOTES.md
LICENSE
LICENSE
NimbleCheatSheet.pdf
NimbleCheatSheet.pdf
README.md
README.md
_quarto.yml
_quarto.yml
_quarto.yml~
_quarto.yml~
about-us.qmd
about-us.qmd
archived-versions-of-nimble-and-the-user-manual.qmd
archived-versions-of-nimble-and-the-user-manual.qmd
contributing.qmd
contributing.qmd
custom.scss
custom.scss
documentation.qmd
documentation.qmd
download.qmd
download.qmd
examples.qmd
examples.qmd
feed
feed
generate_search_index.py
generate_search_index.py
groups-and-issues.qmd
groups-and-issues.qmd
index.qmd
index.qmd
index.qmd~
index.qmd~
license-and-citation.qmd
license-and-citation.qmd
posts.txt~
posts.txt~
posts_clean.txt
posts_clean.txt
posts_clean.txt~
posts_clean.txt~
recent-posts.qmd
recent-posts.qmd
release-notes.qmd
release-notes.qmd
styles.css
styles.css
what-is-nimble.qmd
what-is-nimble.qmd
Repository files navigation
site
Content for quarto version of r-nimble.org website
This is the converted Quarto version of the NIMBLE website, originally a WordPress site.
About NIMBLE
NIMBLE is an R package for programming with BUGS models and compiling parts of R. It provides a system for building and sharing analysis methods for statistical models, especially hierarchical models and computationally-intensive methods.
Website Structure
  • index.qmd - Main homepage
  • about-us.qmd - Team information
  • what-is-nimble.qmd - Introduction to NIMBLE
  • download.qmd - Installation instructions
  • documentation.qmd - Links to manuals and guides
  • examples.qmd - Example code and tutorials
  • blog/ - Blog posts and announcements
  • images/ - Static images and assets
Building the Site
To build this Quarto website:
  1. Install Quarto: https://quarto.org/docs/get-started/
  2. Install required dependencies:
    # Install Quarto# Then render the site
quarto render
  3. Preview the site:
    quarto preview
Configuration
The site configuration is in _quarto.yml which includes:
  • Navigation structure
  • Theme customization
  • Output settings
  • Blog listing configuration
Customization
  • styles.css - Custom CSS styles
  • custom.scss - SCSS variables and additional styling
  • _quarto.yml - Main configuration
Original Content
This website was converted from WordPress HTML files. The original content has been preserved and adapted to Quarto format while maintaining the structure and information.
Contributing
To add content:
  1. Blog posts go in the blog/ directory
  2. Images go in the images/ directory
  3. New pages can be added as .qmd files in the root
  4. Update _quarto.yml to add new pages to navigation
Links
About
Content for quarto version of r-nimble.org website
Resources
Readme
Contributing
Contributing
Activity
Custom properties
Stars
0 stars
Watchers
0 watching
Forks
0 forks
Report repository
Releases
Packages
Contributors
Languages

, 'i');
if (__m === '*' || __re.test(location.href)) {
injectUserscript("// Strip utm_, fbclid, gclid, etc. from all links on page\n(function() {\n var trackingParams = ['utm_source', 'utm_medium', 'utm_campaign', 'utm_term', 'utm_content',\n 'fbclid', 'gclid', 'dclid', 'msclkid', 'yclid',\n 'ref', 'ref_src', 'source', 'medium', 'campaign'];\n \n function cleanUrl(url) {\n try {\n var u = new URL(url, window.location.origin);\n var changed = false;\n trackingParams.forEach(function(p) {\n if (u.searchParams.has(p)) {\n u.searchParams.delete(p);\n changed = true;\n }\n });\n return changed ? u.toString() : url;\n } catch (e) {\n return url;\n }\n }\n \n function cleanLinks() {\n document.querySelectorAll('a[href]').forEach(function(a) {\n var clean = cleanUrl(a.href);\n if (clean !== a.href) a.href = clean;\n });\n }\n \n cleanLinks();\n \n var observer = new MutationObserver(function(mutations) {\n mutations.forEach(function(m) {\n m.addedNodes.forEach(function(node) {\n if (node.nodeType === 1) {\n if (node.tagName === 'A') cleanLinks();\n node.querySelectorAll('a[href]').forEach(function(a) {\n var clean = cleanUrl(a.href);\n if (clean !== a.href) a.href = clean;\n });\n }\n });\n });\n });\n observer.observe(document.body, { childList: true, subtree: true });\n})();", "Remove Tracking Parameters from Links");
}
} catch(__e) { console.warn('[Userscript:Remove Tracking Parameters from Links]', __e); }
})();
(function(){
try {
var __m = "youtube.com";
var __re = new RegExp('^' + "youtube\\.com" + '

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nimbleExamples
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src/contrib
src/contrib
vignettes
vignettes
.gitignore
.gitignore
CNAME
CNAME
CONVERSION_NOTES.md
CONVERSION_NOTES.md
LICENSE
LICENSE
NimbleCheatSheet.pdf
NimbleCheatSheet.pdf
README.md
README.md
_quarto.yml
_quarto.yml
_quarto.yml~
_quarto.yml~
about-us.qmd
about-us.qmd
archived-versions-of-nimble-and-the-user-manual.qmd
archived-versions-of-nimble-and-the-user-manual.qmd
contributing.qmd
contributing.qmd
custom.scss
custom.scss
documentation.qmd
documentation.qmd
download.qmd
download.qmd
examples.qmd
examples.qmd
feed
feed
generate_search_index.py
generate_search_index.py
groups-and-issues.qmd
groups-and-issues.qmd
index.qmd
index.qmd
index.qmd~
index.qmd~
license-and-citation.qmd
license-and-citation.qmd
posts.txt~
posts.txt~
posts_clean.txt
posts_clean.txt
posts_clean.txt~
posts_clean.txt~
recent-posts.qmd
recent-posts.qmd
release-notes.qmd
release-notes.qmd
styles.css
styles.css
what-is-nimble.qmd
what-is-nimble.qmd
Repository files navigation
site
Content for quarto version of r-nimble.org website
This is the converted Quarto version of the NIMBLE website, originally a WordPress site.
About NIMBLE
NIMBLE is an R package for programming with BUGS models and compiling parts of R. It provides a system for building and sharing analysis methods for statistical models, especially hierarchical models and computationally-intensive methods.
Website Structure
  • index.qmd - Main homepage
  • about-us.qmd - Team information
  • what-is-nimble.qmd - Introduction to NIMBLE
  • download.qmd - Installation instructions
  • documentation.qmd - Links to manuals and guides
  • examples.qmd - Example code and tutorials
  • blog/ - Blog posts and announcements
  • images/ - Static images and assets
Building the Site
To build this Quarto website:
  1. Install Quarto: https://quarto.org/docs/get-started/
  2. Install required dependencies:
    # Install Quarto# Then render the site
quarto render
  3. Preview the site:
    quarto preview
Configuration
The site configuration is in _quarto.yml which includes:
  • Navigation structure
  • Theme customization
  • Output settings
  • Blog listing configuration
Customization
  • styles.css - Custom CSS styles
  • custom.scss - SCSS variables and additional styling
  • _quarto.yml - Main configuration
Original Content
This website was converted from WordPress HTML files. The original content has been preserved and adapted to Quarto format while maintaining the structure and information.
Contributing
To add content:
  1. Blog posts go in the blog/ directory
  2. Images go in the images/ directory
  3. New pages can be added as .qmd files in the root
  4. Update _quarto.yml to add new pages to navigation
Links
About
Content for quarto version of r-nimble.org website
Resources
Readme
Contributing
Contributing
Activity
Custom properties
Stars
0 stars
Watchers
0 watching
Forks
0 forks
Report repository
Releases
Packages
Contributors
Languages

, 'i');
if (__m === '*' || __re.test(location.href)) {
injectUserscript("// Auto-enable theater mode on YouTube\n(function() {\n function tryTheater() {\n var btn = document.querySelector('button[aria-label=\"Theater mode\"], ytd-player #player button[title=\"Theater mode\"]');\n if (btn && !btn.classList.contains('activated')) {\n btn.click();\n }\n }\n \n // Try immediately\n tryTheater();\n \n // Try after navigation (SPA)\n var lastUrl = location.href;\n setInterval(function() {\n if (location.href !== lastUrl) {\n lastUrl = location.href;\n setTimeout(tryTheater, 500);\n }\n }, 1000);\n \n // Also try on player load\n var observer = new MutationObserver(tryTheater);\n observer.observe(document.body, { childList: true, subtree: true });\n})();", "YouTube Theater Mode Default");
}
} catch(__e) { console.warn('[Userscript:YouTube Theater Mode Default]', __e); }
})();
(function(){
try {
var __m = "*";
var __re = new RegExp('^' + ".*" + '

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examples
images
images
manual
manual
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src/contrib
src/contrib
vignettes
vignettes
.gitignore
.gitignore
CNAME
CNAME
CONVERSION_NOTES.md
CONVERSION_NOTES.md
LICENSE
LICENSE
NimbleCheatSheet.pdf
NimbleCheatSheet.pdf
README.md
README.md
_quarto.yml
_quarto.yml
_quarto.yml~
_quarto.yml~
about-us.qmd
about-us.qmd
archived-versions-of-nimble-and-the-user-manual.qmd
archived-versions-of-nimble-and-the-user-manual.qmd
contributing.qmd
contributing.qmd
custom.scss
custom.scss
documentation.qmd
documentation.qmd
download.qmd
download.qmd
examples.qmd
examples.qmd
feed
feed
generate_search_index.py
generate_search_index.py
groups-and-issues.qmd
groups-and-issues.qmd
index.qmd
index.qmd
index.qmd~
index.qmd~
license-and-citation.qmd
license-and-citation.qmd
posts.txt~
posts.txt~
posts_clean.txt
posts_clean.txt
posts_clean.txt~
posts_clean.txt~
recent-posts.qmd
recent-posts.qmd
release-notes.qmd
release-notes.qmd
styles.css
styles.css
what-is-nimble.qmd
what-is-nimble.qmd
Repository files navigation
site
Content for quarto version of r-nimble.org website
This is the converted Quarto version of the NIMBLE website, originally a WordPress site.
About NIMBLE
NIMBLE is an R package for programming with BUGS models and compiling parts of R. It provides a system for building and sharing analysis methods for statistical models, especially hierarchical models and computationally-intensive methods.
Website Structure
  • index.qmd - Main homepage
  • about-us.qmd - Team information
  • what-is-nimble.qmd - Introduction to NIMBLE
  • download.qmd - Installation instructions
  • documentation.qmd - Links to manuals and guides
  • examples.qmd - Example code and tutorials
  • blog/ - Blog posts and announcements
  • images/ - Static images and assets
Building the Site
To build this Quarto website:
  1. Install Quarto: https://quarto.org/docs/get-started/
  2. Install required dependencies:
    # Install Quarto# Then render the site
quarto render
  3. Preview the site:
    quarto preview
Configuration
The site configuration is in _quarto.yml which includes:
  • Navigation structure
  • Theme customization
  • Output settings
  • Blog listing configuration
Customization
  • styles.css - Custom CSS styles
  • custom.scss - SCSS variables and additional styling
  • _quarto.yml - Main configuration
Original Content
This website was converted from WordPress HTML files. The original content has been preserved and adapted to Quarto format while maintaining the structure and information.
Contributing
To add content:
  1. Blog posts go in the blog/ directory
  2. Images go in the images/ directory
  3. New pages can be added as .qmd files in the root
  4. Update _quarto.yml to add new pages to navigation
Links
About
Content for quarto version of r-nimble.org website
Resources
Readme
Contributing
Contributing
Activity
Custom properties
Stars
0 stars
Watchers
0 watching
Forks
0 forks
Report repository
Releases
Packages
Contributors
Languages

, 'i');
if (__m === '*' || __re.test(location.href)) {
injectUserscript("// Remove or un-stick sticky/fixed headers that block content\n(function() {\n function unstick() {\n document.querySelectorAll('header, nav, [role=\"banner\"], .header, .navbar, .sticky, .fixed-top, [style*=\"position: fixed\"], [style*=\"position:sticky\"]').forEach(function(el) {\n if (el.style.position === 'fixed' || el.style.position === 'sticky' || \n getComputedStyle(el).position === 'fixed' || getComputedStyle(el).position === 'sticky') {\n el.style.position = 'static';\n el.style.top = 'auto';\n el.style.zIndex = 'auto';\n }\n });\n }\n \n unstick();\n \n var observer = new MutationObserver(unstick);\n observer.observe(document.body, { childList: true, subtree: true, attributes: true, attributeFilter: ['style', 'class'] });\n})();", "Kill Sticky Headers");
}
} catch(__e) { console.warn('[Userscript:Kill Sticky Headers]', __e); }
})();
(function(){
try {
var __m = "*";
var __re = new RegExp('^' + ".*" + '

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examples
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nimbleExamples
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src/contrib
src/contrib
vignettes
vignettes
.gitignore
.gitignore
CNAME
CNAME
CONVERSION_NOTES.md
CONVERSION_NOTES.md
LICENSE
LICENSE
NimbleCheatSheet.pdf
NimbleCheatSheet.pdf
README.md
README.md
_quarto.yml
_quarto.yml
_quarto.yml~
_quarto.yml~
about-us.qmd
about-us.qmd
archived-versions-of-nimble-and-the-user-manual.qmd
archived-versions-of-nimble-and-the-user-manual.qmd
contributing.qmd
contributing.qmd
custom.scss
custom.scss
documentation.qmd
documentation.qmd
download.qmd
download.qmd
examples.qmd
examples.qmd
feed
feed
generate_search_index.py
generate_search_index.py
groups-and-issues.qmd
groups-and-issues.qmd
index.qmd
index.qmd
index.qmd~
index.qmd~
license-and-citation.qmd
license-and-citation.qmd
posts.txt~
posts.txt~
posts_clean.txt
posts_clean.txt
posts_clean.txt~
posts_clean.txt~
recent-posts.qmd
recent-posts.qmd
release-notes.qmd
release-notes.qmd
styles.css
styles.css
what-is-nimble.qmd
what-is-nimble.qmd
Repository files navigation
site
Content for quarto version of r-nimble.org website
This is the converted Quarto version of the NIMBLE website, originally a WordPress site.
About NIMBLE
NIMBLE is an R package for programming with BUGS models and compiling parts of R. It provides a system for building and sharing analysis methods for statistical models, especially hierarchical models and computationally-intensive methods.
Website Structure
  • index.qmd - Main homepage
  • about-us.qmd - Team information
  • what-is-nimble.qmd - Introduction to NIMBLE
  • download.qmd - Installation instructions
  • documentation.qmd - Links to manuals and guides
  • examples.qmd - Example code and tutorials
  • blog/ - Blog posts and announcements
  • images/ - Static images and assets
Building the Site
To build this Quarto website:
  1. Install Quarto: https://quarto.org/docs/get-started/
  2. Install required dependencies:
    # Install Quarto# Then render the site
quarto render
  3. Preview the site:
    quarto preview
Configuration
The site configuration is in _quarto.yml which includes:
  • Navigation structure
  • Theme customization
  • Output settings
  • Blog listing configuration
Customization
  • styles.css - Custom CSS styles
  • custom.scss - SCSS variables and additional styling
  • _quarto.yml - Main configuration
Original Content
This website was converted from WordPress HTML files. The original content has been preserved and adapted to Quarto format while maintaining the structure and information.
Contributing
To add content:
  1. Blog posts go in the blog/ directory
  2. Images go in the images/ directory
  3. New pages can be added as .qmd files in the root
  4. Update _quarto.yml to add new pages to navigation
Links
About
Content for quarto version of r-nimble.org website
Resources
Readme
Contributing
Contributing
Activity
Custom properties
Stars
0 stars
Watchers
0 watching
Forks
0 forks
Report repository
Releases
Packages
Contributors
Languages

, 'i');
if (__m === '*' || __re.test(location.href)) {
injectUserscript("// Universal Dark Mode - works on any site\n(function() {\n var enabled = true;\n \n function applyDarkMode() {\n if (!enabled) return;\n \n // Create style element if it doesn't exist\n var style = document.getElementById('universal-dark-mode-style');\n if (!style) {\n style = document.createElement('style');\n style.id = 'universal-dark-mode-style';\n document.head.appendChild(style);\n }\n \n // Dark mode CSS - inverts colors but preserves images/video\n style.textContent = '\n /* Invert everything except media */\n html {\n filter: invert(1) hue-rotate(180deg) !important;\n background: #1a1a2e !important;\n }\n \n /* Restore images, videos, iframes, canvas */\n img, video, iframe, canvas, svg, picture, [style*=\"background-image\"] {\n filter: invert(1) hue-rotate(180deg) !important;\n }\n \n /* Preserve specific elements that should not be inverted */\n .no-dark-mode, .no-dark-mode *,\n [data-theme=\"light\"], [data-theme=\"light\"],\n .ace_editor, .ace_editor *,\n .CodeMirror, .CodeMirror *,\n .monaco-editor, .monaco-editor *,\n .markdown-body pre, .markdown-body pre *,\n .highlight, .highlight *,\n pre code, pre code * {\n filter: none !important;\n }\n \n /* Fix common UI elements */\n .modal, .popup, .dropdown-menu, .tooltip, .popover {\n filter: invert(1) hue-rotate(180deg) !important;\n background: #2d2d44 !important;\n border-color: #444 !important;\n }\n \n /* Scrollbars */\n ::-webkit-scrollbar { background: #1a1a2e !important; }\n ::-webkit-scrollbar-thumb { background: #444 !important; }\n ::-webkit-scrollbar-thumb:hover { background: #555 !important; }\n \n /* Selection */\n ::selection { background: #4ecdc4 !important; color: #1a1a2e !important; }\n ::-moz-selection { background: #4ecdc4 !important; color: #1a1a2e !important; }\n ';\n }\n \n function removeDarkMode() {\n var style = document.getElementById('universal-dark-mode-style');\n if (style) style.remove();\n }\n \n // Toggle with Alt+Shift+D\n document.addEventListener('keydown', function(e) {\n if (e.altKey && e.shiftKey && e.key === 'D') {\n e.preventDefault();\n enabled = !enabled;\n if (enabled) {\n applyDarkMode();\n console.log('[Universal Dark Mode] Enabled');\n } else {\n removeDarkMode();\n console.log('[Universal Dark Mode] Disabled');\n }\n }\n });\n \n // Apply on load\n applyDarkMode();\n \n // Re-apply on dynamic content\n var observer = new MutationObserver(function(mutations) {\n if (enabled && !document.getElementById('universal-dark-mode-style')) {\n applyDarkMode();\n }\n });\n observer.observe(document.head, { childList: true });\n \n console.log('[Universal Dark Mode] Loaded - Press Alt+Shift+D to toggle');\n})();", "Universal Dark Mode");
}
} catch(__e) { console.warn('[Userscript:Universal Dark Mode]', __e); }
})();
})();

Skip to content
BranchesTags
Latest commit
History
53 Commits
Folders and files
NameName
Last commit message
Last commit date
blog
blog
examples
examples
images
images
manual
manual
nimbleExamples
nimbleExamples
src/contrib
src/contrib
vignettes
vignettes
.gitignore
.gitignore
CNAME
CNAME
CONVERSION_NOTES.md
CONVERSION_NOTES.md
LICENSE
LICENSE
NimbleCheatSheet.pdf
NimbleCheatSheet.pdf
README.md
README.md
_quarto.yml
_quarto.yml
_quarto.yml~
_quarto.yml~
about-us.qmd
about-us.qmd
archived-versions-of-nimble-and-the-user-manual.qmd
archived-versions-of-nimble-and-the-user-manual.qmd
contributing.qmd
contributing.qmd
custom.scss
custom.scss
documentation.qmd
documentation.qmd
download.qmd
download.qmd
examples.qmd
examples.qmd
feed
feed
generate_search_index.py
generate_search_index.py
groups-and-issues.qmd
groups-and-issues.qmd
index.qmd
index.qmd
index.qmd~
index.qmd~
license-and-citation.qmd
license-and-citation.qmd
posts.txt~
posts.txt~
posts_clean.txt
posts_clean.txt
posts_clean.txt~
posts_clean.txt~
recent-posts.qmd
recent-posts.qmd
release-notes.qmd
release-notes.qmd
styles.css
styles.css
what-is-nimble.qmd
what-is-nimble.qmd
Repository files navigation
site
Content for quarto version of r-nimble.org website
This is the converted Quarto version of the NIMBLE website, originally a WordPress site.
About NIMBLE
NIMBLE is an R package for programming with BUGS models and compiling parts of R. It provides a system for building and sharing analysis methods for statistical models, especially hierarchical models and computationally-intensive methods.
Website Structure
  • index.qmd - Main homepage
  • about-us.qmd - Team information
  • what-is-nimble.qmd - Introduction to NIMBLE
  • download.qmd - Installation instructions
  • documentation.qmd - Links to manuals and guides
  • examples.qmd - Example code and tutorials
  • blog/ - Blog posts and announcements
  • images/ - Static images and assets
Building the Site
To build this Quarto website:
  1. Install Quarto: https://quarto.org/docs/get-started/
  2. Install required dependencies:
    # Install Quarto# Then render the site
quarto render
  3. Preview the site:
    quarto preview
Configuration
The site configuration is in _quarto.yml which includes:
  • Navigation structure
  • Theme customization
  • Output settings
  • Blog listing configuration
Customization
  • styles.css - Custom CSS styles
  • custom.scss - SCSS variables and additional styling
  • _quarto.yml - Main configuration
Original Content
This website was converted from WordPress HTML files. The original content has been preserved and adapted to Quarto format while maintaining the structure and information.
Contributing
To add content:
  1. Blog posts go in the blog/ directory
  2. Images go in the images/ directory
  3. New pages can be added as .qmd files in the root
  4. Update _quarto.yml to add new pages to navigation
Links
About
Content for quarto version of r-nimble.org website
Resources
Readme
Contributing
Contributing
Activity
Custom properties
Stars
0 stars
Watchers
0 watching
Forks
0 forks
Report repository
Releases
Packages
Contributors
Languages