gen-coord

Manage genomic coordinates (Bioinformatics).

Install

Use NPM for install the package:

npm install gen-coord

Usage

Split(str)

Split a genomic coordinate and get an object with the next attributes:

• chromosome: chromosome for the coordinate.
• start: start position.
• end: end position.

//Import gen-coordvargenCoord=require('gen-coord');//Split a coordinate stringgenCoord.Split('1:12345-67890');// returns { chromosome: '1', start: 12345, end: 67890 }

Join(obj)

Returns a new string with the genomic coordinate.

//Import gen-coordvargenCoord=require('gen-coord');//Join a coordinate objectgenCoord.Join({chromosome: '1',start: 12345,end: 67890});// returns '1:12345-67890'